More than 300 homologs were found in PanDaTox collection
for query gene SO_2119 on replicon NC_004347
Organism: Shewanella oneidensis MR-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009665  Shew185_2249  response regulator receiver protein  66.14 
 
 
577 aa  783    Shewanella baltica OS185  Bacteria  normal  0.299733  n/a   
 
 
-
 
NC_004347  SO_2119  response regulator  100 
 
 
565 aa  1159    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_2096  response regulator receiver protein  66.32 
 
 
577 aa  790    Shewanella baltica OS223  Bacteria  normal  0.856197  normal 
 
 
-
 
NC_009997  Sbal195_2366  response regulator receiver protein  66.67 
 
 
577 aa  791    Shewanella baltica OS195  Bacteria  normal  0.018295  normal 
 
 
-
 
NC_008321  Shewmr4_2095  response regulator receiver protein  53.53 
 
 
567 aa  610  1e-173  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1879  response regulator receiver protein  53.53 
 
 
567 aa  610  1e-173  Shewanella sp. MR-7  Bacteria  normal  normal  0.686257 
 
 
-
 
NC_008577  Shewana3_2220  response regulator receiver protein  51.83 
 
 
565 aa  603  1.0000000000000001e-171  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_2110  stage II sporulation E family protein  63.14 
 
 
369 aa  481  1e-134  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2108  response regulator receiver protein  65 
 
 
224 aa  287  2.9999999999999996e-76  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3297  response regulator receiver protein  30.95 
 
 
550 aa  260  4e-68  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_2157  response regulator receiver protein  30.07 
 
 
577 aa  230  6e-59  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_1594  response regulator receiver protein  28.75 
 
 
548 aa  214  3.9999999999999995e-54  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3580  response regulator receiver protein  27.85 
 
 
564 aa  206  1e-51  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_4363  response regulator receiver protein  26.5 
 
 
563 aa  197  6e-49  Pseudomonas putida KT2440  Bacteria  normal  normal  0.470941 
 
 
-
 
NC_007912  Sde_2179  flagellar basal-body rod protein FlgC  26.67 
 
 
575 aa  194  4e-48  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1504  response regulator receiver protein  26.36 
 
 
563 aa  193  6e-48  Pseudomonas putida F1  Bacteria  normal  0.709749  normal  0.106415 
 
 
-
 
NC_011138  MADE_01717  putative response regulator  26.29 
 
 
568 aa  193  6e-48  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_1542  response regulator receiver domain-containing protein  28.47 
 
 
567 aa  193  7e-48  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.3365  normal  0.98827 
 
 
-
 
NC_010501  PputW619_3688  response regulator receiver protein  26.59 
 
 
564 aa  191  4e-47  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_3924  response regulator receiver protein  26.15 
 
 
563 aa  188  3e-46  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2819  response regulator receiver protein  27.09 
 
 
562 aa  186  1.0000000000000001e-45  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0360472 
 
 
-
 
NC_008740  Maqu_1991  response regulator receiver protein  24.96 
 
 
574 aa  183  7e-45  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1964  response regulator  27.93 
 
 
568 aa  182  1e-44  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.58831  n/a   
 
 
-
 
NC_008463  PA14_20780  putative two-component response regulator  26.5 
 
 
571 aa  181  2.9999999999999997e-44  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.283191  normal 
 
 
-
 
NC_009656  PSPA7_1784  putative two-component response regulator  26.68 
 
 
571 aa  180  4.999999999999999e-44  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_34360  Response regulator  26.71 
 
 
575 aa  180  4.999999999999999e-44  Azotobacter vinelandii DJ  Bacteria  normal  0.328347  n/a   
 
 
-
 
NC_009654  Mmwyl1_3440  response regulator receiver protein  25.75 
 
 
572 aa  180  8e-44  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0157  response regulator  27.31 
 
 
568 aa  177  3e-43  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3451  response regulator receiver:ATP-binding region, ATPase-like:stage II sporulation E  27.11 
 
 
568 aa  177  4e-43  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.223622  normal 
 
 
-
 
NC_007520  Tcr_1039  response regulator receiver domain-containing protein  25.48 
 
 
567 aa  162  1e-38  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3118  response regulator receiver domain-containing protein  26.57 
 
 
563 aa  162  2e-38  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_2342  response regulator receiver protein  26.06 
 
 
561 aa  150  7e-35  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.00850448  normal 
 
 
-
 
NC_008576  Mmc1_3534  response regulator receiver protein  27.25 
 
 
393 aa  124  3e-27  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0106  stage II sporulation E  29.39 
 
 
415 aa  117  5e-25  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3071  response regulator receiver protein  27.13 
 
 
390 aa  112  2.0000000000000002e-23  Magnetococcus sp. MC-1  Bacteria  normal  hitchhiker  0.000442652 
 
 
-
 
NC_008576  Mmc1_2528  response regulator receiver protein  24.81 
 
 
378 aa  111  4.0000000000000004e-23  Magnetococcus sp. MC-1  Bacteria  normal  0.249668  normal  0.0734484 
 
 
-
 
NC_008576  Mmc1_2956  response regulator receiver protein  23.58 
 
 
365 aa  107  4e-22  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_2226  response regulator receiver protein  22.34 
 
 
383 aa  100  5e-20  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.916787 
 
 
-
 
NC_007298  Daro_0347  PAS  26.42 
 
 
513 aa  100  9e-20  Dechloromonas aromatica RCB  Bacteria  normal  unclonable  0.000000072068 
 
 
-
 
NC_008576  Mmc1_1726  putative PAS/PAC sensor protein  28.33 
 
 
504 aa  92.4  2e-17  Magnetococcus sp. MC-1  Bacteria  normal  0.0909206  normal  0.287685 
 
 
-
 
NC_008576  Mmc1_3023  response regulator receiver protein  24.54 
 
 
367 aa  89  2e-16  Magnetococcus sp. MC-1  Bacteria  normal  0.566048  normal 
 
 
-
 
NC_008576  Mmc1_0435  response regulator receiver protein  24.29 
 
 
373 aa  85.1  0.000000000000003  Magnetococcus sp. MC-1  Bacteria  normal  0.0149866  normal 
 
 
-
 
NC_013173  Dbac_2828  response regulator receiver sensor signal transduction histidine kinase  26.82 
 
 
410 aa  72.8  0.00000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_2946  response regulator receiver modulated serine phosphatase  23.38 
 
 
384 aa  71.2  0.00000000005  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_1753  response regulator receiver modulated serine phosphatase  21.57 
 
 
486 aa  69.7  0.0000000001  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.646626  n/a   
 
 
-
 
NC_011146  Gbem_0731  response regulator receiver modulated serine phosphatase  20.4 
 
 
396 aa  69.7  0.0000000001  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_0589  response regulator receiver modulated serine phosphatase  22.64 
 
 
371 aa  69.3  0.0000000002  Rhodothermus marinus DSM 4252  Bacteria  normal  0.420228  n/a   
 
 
-
 
NC_008751  Dvul_1628  response regulator receiver protein  24.64 
 
 
380 aa  68.6  0.0000000003  Desulfovibrio vulgaris DP4  Bacteria  normal  0.311262  normal 
 
 
-
 
NC_010814  Glov_1558  response regulator receiver protein  23.53 
 
 
566 aa  68.6  0.0000000003  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1702  response regulator receiver modulated serine phosphatase  23.31 
 
 
460 aa  68.2  0.0000000004  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A1035  response regulator  23.25 
 
 
380 aa  67.8  0.0000000005  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_0344  two component Fis family transcriptional regulator  26.12 
 
 
452 aa  66.6  0.000000001  Chlorobium luteolum DSM 273  Bacteria  normal  0.0882822  normal  0.355114 
 
 
-
 
NC_011772  BCG9842_B4268  response regulator  23.25 
 
 
380 aa  66.6  0.000000001  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00568873 
 
 
-
 
NC_014248  Aazo_0176  response regulator receiver modulated serine phosphatase  23.04 
 
 
378 aa  65.5  0.000000002  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013162  Coch_1482  two component, sigma54 specific, transcriptional regulator, Fis family  33.33 
 
 
458 aa  65.1  0.000000003  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.712271  n/a   
 
 
-
 
NC_011059  Paes_0925  two component, sigma54 specific, transcriptional regulator, Fis family  29.29 
 
 
484 aa  64.7  0.000000004  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.815173  normal 
 
 
-
 
NC_008609  Ppro_1378  response regulator receiver modulated metal dependent phosphohydrolase  25.16 
 
 
348 aa  64.7  0.000000004  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00581699  n/a   
 
 
-
 
NC_003296  RS02226  sigma-54 interacting response regulator transcription regulator protein  27.74 
 
 
491 aa  64.3  0.000000005  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_0622  two component transcriptional regulator  28.69 
 
 
240 aa  64.3  0.000000005  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0205  response regulator receiver protein  23.26 
 
 
395 aa  64.3  0.000000006  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1112  response regulator receiver domain-containing protein  26.91 
 
 
399 aa  64.3  0.000000006  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1830  response regulator receiver modulated diguanylate cyclase  21.3 
 
 
941 aa  64.3  0.000000006  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_3932  response regulator receiver modulated serine phosphatase  23.43 
 
 
388 aa  64.3  0.000000006  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.380742 
 
 
-
 
NC_009767  Rcas_1114  response regulator receiver modulated serine phosphatase  21.49 
 
 
391 aa  63.9  0.000000008  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_0921  response regulator receiver modulated serine phosphatase  20.99 
 
 
378 aa  63.9  0.000000008  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_0983  DNA-binding transcriptional regulator TorR  25.76 
 
 
236 aa  63.9  0.000000008  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.291581 
 
 
-
 
NC_009485  BBta_2152  putative response regulator, putative serine phosphatase  22.79 
 
 
434 aa  63.2  0.00000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_4259  two component, sigma54 specific, Fis family transcriptional regulator  27.81 
 
 
504 aa  63.5  0.00000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU3217  sigma-54 dependent DNA-binding response regulator  22.56 
 
 
501 aa  62.8  0.00000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_3802  response regulator receiver modulated serine phosphatase  24.35 
 
 
393 aa  62.8  0.00000002  Cyanothece sp. PCC 8802  Bacteria  normal  0.477794  normal 
 
 
-
 
NC_013131  Caci_3484  response regulator receiver modulated serine phosphatase  23.1 
 
 
395 aa  62.4  0.00000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_3751  sigma-54 factor interaction domain-containing protein  29.41 
 
 
441 aa  62.4  0.00000002  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_3753  response regulator receiver modulated serine phosphatase  24.35 
 
 
393 aa  62.8  0.00000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011769  DvMF_1419  signal transduction histidine kinase  23.72 
 
 
551 aa  62.4  0.00000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009718  Fnod_0999  response regulator receiver protein  24.58 
 
 
452 aa  62.8  0.00000002  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  0.766542  n/a   
 
 
-
 
NC_008009  Acid345_3356  two component, sigma54 specific, Fis family transcriptional regulator  23.04 
 
 
484 aa  62.4  0.00000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_3770  response regulator receiver protein  22.35 
 
 
391 aa  62.4  0.00000002  Roseiflexus sp. RS-1  Bacteria  normal  unclonable  0.0000112062 
 
 
-
 
NC_003909  BCE_1088  response regulator  24.04 
 
 
380 aa  62  0.00000003  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_1236  response regulator receiver sensor signal transduction histidine kinase  21.58 
 
 
386 aa  61.6  0.00000003  Burkholderia ambifaria MC40-6  Bacteria  normal  0.493129  normal 
 
 
-
 
NC_009092  Shew_2803  DNA-binding transcriptional regulator TorR  27.82 
 
 
241 aa  61.2  0.00000004  Shewanella loihica PV-4  Bacteria  normal  hitchhiker  0.00131566 
 
 
-
 
NC_011773  BCAH820_1070  response regulator  25.76 
 
 
358 aa  61.6  0.00000004  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  9.209800000000002e-41 
 
 
-
 
NC_007947  Mfla_1183  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  31.39 
 
 
722 aa  61.2  0.00000004  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_005957  BT9727_0915  sigma factor sigB regulation protein  25.76 
 
 
380 aa  61.2  0.00000005  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00116334  n/a   
 
 
-
 
NC_009439  Pmen_1929  response regulator receiver protein  22.53 
 
 
394 aa  61.2  0.00000005  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.310245 
 
 
-
 
NC_008639  Cpha266_1834  multi-sensor signal transduction histidine kinase  27.61 
 
 
681 aa  61.2  0.00000005  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2245  two component, sigma54 specific, transcriptional regulator, Fis family  25.55 
 
 
460 aa  60.8  0.00000006  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2015  two component hybrid sensor response regulator  25.95 
 
 
391 aa  60.8  0.00000006  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_0819  two component transcriptional regulator, winged helix family  26.23 
 
 
246 aa  60.8  0.00000006  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3029  two component transcriptional regulator  24.35 
 
 
238 aa  60.8  0.00000006  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.452516  normal 
 
 
-
 
NC_007492  Pfl01_3849  response regulator receiver (CheY) modulated Serine phosphatase  21.46 
 
 
412 aa  60.5  0.00000007  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.658628 
 
 
-
 
NC_013889  TK90_2268  two component, sigma54 specific, transcriptional regulator, Fis family  26.61 
 
 
459 aa  60.5  0.00000007  Thioalkalivibrio sp. K90mix  Bacteria  normal  hitchhiker  0.00701331 
 
 
-
 
NC_009439  Pmen_1831  two component transcriptional regulator  25 
 
 
225 aa  60.5  0.00000008  Pseudomonas mendocina ymp  Bacteria  normal  0.989444  normal  0.522163 
 
 
-
 
NC_010678  Rpic_3767  two component, sigma54 specific, transcriptional regulator, Fis family  25.64 
 
 
468 aa  60.5  0.00000009  Ralstonia pickettii 12J  Bacteria  normal  0.114638  normal  0.0523944 
 
 
-
 
NC_003910  CPS_2473  DNA-binding response regulator  29.03 
 
 
242 aa  60.1  0.00000009  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1912  response regulator receiver:stage II sporulation E  22.02 
 
 
394 aa  60.5  0.00000009  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.432168  hitchhiker  0.00180426 
 
 
-
 
NC_011060  Ppha_1319  two component, sigma54 specific, transcriptional regulator, Fis family  22.34 
 
 
452 aa  60.5  0.00000009  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_3269  two component, sigma54 specific, Fis family transcriptional regulator  24.26 
 
 
467 aa  60.1  0.00000009  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.382263 
 
 
-
 
NC_012857  Rpic12D_3878  two component, sigma54 specific, transcriptional regulator, Fis family  25.64 
 
 
468 aa  60.5  0.00000009  Ralstonia pickettii 12D  Bacteria  normal  0.330744  normal 
 
 
-
 
NC_011884  Cyan7425_2673  response regulator receiver modulated serine phosphatase  21.29 
 
 
392 aa  60.5  0.00000009  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_0905  response regulator receiver modulated serine phosphatase  25.22 
 
 
380 aa  60.1  0.0000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
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