213 homologs were found in PanDaTox collection
for query gene Rxyl_1282 on replicon NC_008148
Organism: Rubrobacter xylanophilus DSM 9941



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008148  Rxyl_1282  methylmalonyl-CoA epimerase  100 
 
 
142 aa  282  1.0000000000000001e-75  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.922944  n/a   
 
 
-
 
NC_010814  Glov_3258  methylmalonyl-CoA epimerase  49.62 
 
 
134 aa  145  2.0000000000000003e-34  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.0000316472  n/a   
 
 
-
 
NC_002939  GSU3303  methylmalonyl-CoA epimerase  47.37 
 
 
134 aa  138  1.9999999999999998e-32  Geobacter sulfurreducens PCA  Bacteria  hitchhiker  0.000981467  n/a   
 
 
-
 
NC_014230  CA2559_03285  Lactoylglutathione lyase and related lyase  46.56 
 
 
135 aa  136  1e-31  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.275732  n/a   
 
 
-
 
NC_008609  Ppro_1282  glyoxalase/bleomycin resistance protein/dioxygenase  44.36 
 
 
134 aa  134  4e-31  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3253  methylmalonyl-CoA epimerase  46.62 
 
 
134 aa  133  8e-31  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00000018375  hitchhiker  3.27573e-17 
 
 
-
 
NC_013730  Slin_5823  methylmalonyl-CoA epimerase  43.7 
 
 
135 aa  132  1.9999999999999998e-30  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.609352 
 
 
-
 
NC_011146  Gbem_0558  methylmalonyl-CoA epimerase  49.62 
 
 
137 aa  131  3.9999999999999996e-30  Geobacter bemidjiensis Bem  Bacteria  unclonable  0.000000000977172  n/a   
 
 
-
 
NC_013037  Dfer_3197  methylmalonyl-CoA epimerase  45.8 
 
 
134 aa  131  3.9999999999999996e-30  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_0571  methylmalonyl-CoA epimerase  50.38 
 
 
137 aa  130  6e-30  Geobacter sp. M21  Bacteria  n/a    hitchhiker  3.82853e-18 
 
 
-
 
NC_008609  Ppro_0522  glyoxalase/bleomycin resistance protein/dioxygenase  43.61 
 
 
134 aa  129  2.0000000000000002e-29  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.0000000014865  n/a   
 
 
-
 
NC_009483  Gura_0655  glyoxalase/bleomycin resistance protein/dioxygenase  46.62 
 
 
134 aa  129  2.0000000000000002e-29  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00000000195436  n/a   
 
 
-
 
NC_009675  Anae109_0349  glyoxalase/bleomycin resistance protein/dioxygenase  49.22 
 
 
134 aa  127  6e-29  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.0717499  normal  0.143694 
 
 
-
 
NC_008554  Sfum_0455  glyoxalase/bleomycin resistance protein/dioxygenase  45.24 
 
 
134 aa  126  8.000000000000001e-29  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.571993 
 
 
-
 
NC_009943  Dole_0080  glyoxalase/bleomycin resistance protein/dioxygenase  45.86 
 
 
135 aa  126  1.0000000000000001e-28  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.0425619  n/a   
 
 
-
 
NC_013061  Phep_1564  methylmalonyl-CoA epimerase  43.08 
 
 
134 aa  126  1.0000000000000001e-28  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.395959 
 
 
-
 
NC_009441  Fjoh_0659  glyoxalase/bleomycin resistance protein/dioxygenase  41.22 
 
 
134 aa  124  3e-28  Flavobacterium johnsoniae UW101  Bacteria  hitchhiker  0.00502246  n/a   
 
 
-
 
NC_010320  Teth514_1852  glyoxalase/bleomycin resistance protein/dioxygenase  44.62 
 
 
133 aa  123  7e-28  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_0356  methylmalonyl-CoA epimerase  46.72 
 
 
192 aa  123  7e-28  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_1488  methylmalonyl-CoA epimerase  41.98 
 
 
134 aa  123  1e-27  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.383789  normal  0.131397 
 
 
-
 
NC_010571  Oter_3306  methylmalonyl-CoA epimerase  44.19 
 
 
135 aa  122  2e-27  Opitutus terrae PB90-1  Bacteria  normal  0.369567  normal 
 
 
-
 
NC_009972  Haur_2006  glyoxalase/bleomycin resistance protein/dioxygenase  47.37 
 
 
140 aa  122  2e-27  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0552  methylmalonyl-CoA epimerase  44.53 
 
 
134 aa  121  3e-27  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_4198  methylmalonyl-CoA epimerase  48.44 
 
 
134 aa  121  3e-27  Anaeromyxobacter sp. K  Bacteria  normal  0.152541  n/a   
 
 
-
 
NC_012793  GWCH70_2285  methylmalonyl-CoA epimerase  42.75 
 
 
140 aa  121  3e-27  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.0000102737  n/a   
 
 
-
 
NC_011891  A2cp1_4223  methylmalonyl-CoA epimerase  48.82 
 
 
133 aa  121  3e-27  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_4074  methylmalonyl-CoA epimerase  48.82 
 
 
133 aa  120  4e-27  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.0584893  n/a   
 
 
-
 
NC_007777  Francci3_2781  methylmalonyl-CoA epimerase  43.8 
 
 
141 aa  121  4e-27  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_09410  methylmalonyl-CoA epimerase  44.36 
 
 
145 aa  120  5e-27  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.990135  normal  0.273906 
 
 
-
 
NC_013739  Cwoe_5865  methylmalonyl-CoA epimerase  45.8 
 
 
136 aa  120  6e-27  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013522  Taci_0290  methylmalonyl-CoA epimerase  45.67 
 
 
133 aa  120  8e-27  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_002950  PG1613  glyoxalase family protein  43.08 
 
 
134 aa  119  9.999999999999999e-27  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_014165  Tbis_0916  methylmalonyl-CoA epimerase  44.53 
 
 
140 aa  119  9.999999999999999e-27  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.311023 
 
 
-
 
NC_013525  Tter_1623  methylmalonyl-CoA epimerase  44.88 
 
 
136 aa  119  1.9999999999999998e-26  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_1696  methylmalonyl-CoA epimerase  43.8 
 
 
140 aa  117  3.9999999999999996e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  0.019096  normal  0.134039 
 
 
-
 
NC_013124  Afer_0104  methylmalonyl-CoA epimerase  51.97 
 
 
137 aa  116  9e-26  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_0306  methylmalonyl-CoA epimerase  41.61 
 
 
141 aa  116  9.999999999999999e-26  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009718  Fnod_1316  glyoxalase/bleomycin resistance protein/dioxygenase  42.64 
 
 
135 aa  115  1.9999999999999998e-25  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_1790  glyoxalase/bleomycin resistance protein/dioxygenase  45.39 
 
 
158 aa  114  3.9999999999999997e-25  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_3891  methylmalonyl-CoA epimerase  39.16 
 
 
145 aa  113  6.9999999999999995e-25  Thermomonospora curvata DSM 43183  Bacteria  normal  0.394666  n/a   
 
 
-
 
NC_013132  Cpin_0228  methylmalonyl-CoA epimerase  38.46 
 
 
132 aa  112  2.0000000000000002e-24  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013926  Aboo_1361  methylmalonyl-CoA epimerase  43.51 
 
 
129 aa  112  2.0000000000000002e-24  Aciduliprofundum boonei T469  Archaea  unclonable  2.7651e-17  n/a   
 
 
-
 
NC_010085  Nmar_0953  glyoxalase/bleomycin resistance protein/dioxygenase  39.68 
 
 
131 aa  112  2.0000000000000002e-24  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal  0.0254493 
 
 
-
 
NC_007333  Tfu_2395  methylmalonyl-CoA epimerase  41.26 
 
 
147 aa  111  3e-24  Thermobifida fusca YX  Bacteria  normal  0.754558  n/a   
 
 
-
 
NC_013946  Mrub_2348  methylmalonyl-CoA epimerase  47.66 
 
 
131 aa  111  3e-24  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_3993  glyoxalase/bleomycin resistance protein/dioxygenase  42.55 
 
 
159 aa  110  6e-24  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00061687 
 
 
-
 
NC_009921  Franean1_2507  glyoxalase/bleomycin resistance protein/dioxygenase  43.07 
 
 
141 aa  109  1.0000000000000001e-23  Frankia sp. EAN1pec  Bacteria  normal  0.0106102  normal 
 
 
-
 
NC_010655  Amuc_0200  methylmalonyl-CoA epimerase  35.29 
 
 
140 aa  109  1.0000000000000001e-23  Akkermansia muciniphila ATCC BAA-835  Bacteria  hitchhiker  0.000715247  normal  0.843381 
 
 
-
 
NC_010803  Clim_0871  methylmalonyl-CoA epimerase  38.35 
 
 
135 aa  107  5e-23  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_3611  glyoxalase/bleomycin resistance protein/dioxygenase  41.3 
 
 
157 aa  107  5e-23  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_0680  methylmalonyl-CoA epimerase  44.96 
 
 
131 aa  107  8.000000000000001e-23  Meiothermus silvanus DSM 9946  Bacteria  normal  0.227621  normal  0.151437 
 
 
-
 
NC_013093  Amir_6105  methylmalonyl-CoA epimerase  40.15 
 
 
146 aa  105  2e-22  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0480  glyoxalase/bleomycin resistance protein/dioxygenase  39.69 
 
 
134 aa  105  2e-22  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_0152  glyoxalase/bleomycin resistance protein/dioxygenase  39.69 
 
 
134 aa  104  5e-22  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1796  methylmalonyl-CoA epimerase  41.01 
 
 
170 aa  103  6e-22  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009440  Msed_0639  methylmalonyl-CoA epimerase  41.67 
 
 
140 aa  103  7e-22  Metallosphaera sedula DSM 5348  Archaea  normal  0.237468  normal  0.259775 
 
 
-
 
NC_013947  Snas_6000  methylmalonyl-CoA epimerase  40.94 
 
 
143 aa  103  8e-22  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.0251153 
 
 
-
 
NC_013159  Svir_28560  methylmalonyl-CoA epimerase  42.22 
 
 
153 aa  103  1e-21  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.215327 
 
 
-
 
NC_013757  Gobs_4113  methylmalonyl-CoA epimerase  40.58 
 
 
162 aa  102  1e-21  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0776501  n/a   
 
 
-
 
NC_013216  Dtox_1341  methylmalonyl-CoA epimerase  39.84 
 
 
136 aa  102  2e-21  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.886384  normal  0.16528 
 
 
-
 
NC_009616  Tmel_0586  glyoxalase/bleomycin resistance protein/dioxygenase  36.43 
 
 
135 aa  102  3e-21  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_1258  methylmalonyl-CoA epimerase  37.96 
 
 
147 aa  101  4e-21  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
CP001800  Ssol_0230  methylmalonyl-CoA epimerase  36.5 
 
 
142 aa  99.8  1e-20  Sulfolobus solfataricus 98/2  Archaea  normal  n/a   
 
 
-
 
NC_008009  Acid345_2364  methylmalonyl-CoA epimerase  41.09 
 
 
135 aa  98.2  3e-20  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_1277  methylmalonyl-CoA epimerase  37.4 
 
 
134 aa  97.4  6e-20  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.149828  normal  0.902197 
 
 
-
 
NC_012850  Rleg_1369  methylmalonyl-CoA epimerase  37.4 
 
 
134 aa  96.3  1e-19  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_0981  methylmalonyl-CoA epimerase  40.91 
 
 
139 aa  96.3  1e-19  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0245792  normal  0.390705 
 
 
-
 
NC_008146  Mmcs_3865  methylmalonyl-CoA epimerase  37.5 
 
 
156 aa  95.5  2e-19  Mycobacterium sp. MCS  Bacteria  normal  0.241683  n/a   
 
 
-
 
NC_008254  Meso_1038  methylmalonyl-CoA epimerase  38.35 
 
 
134 aa  95.5  2e-19  Chelativorans sp. BNC1  Bacteria  hitchhiker  0.00716429  n/a   
 
 
-
 
NC_008705  Mkms_3939  methylmalonyl-CoA epimerase  37.5 
 
 
156 aa  95.5  2e-19  Mycobacterium sp. KMS  Bacteria  normal  0.368557  normal  0.0232297 
 
 
-
 
NC_009338  Mflv_2339  glyoxalase/bleomycin resistance protein/dioxygenase  34.69 
 
 
168 aa  95.5  2e-19  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.630848  normal  0.527959 
 
 
-
 
NC_011894  Mnod_4142  methylmalonyl-CoA epimerase  40.46 
 
 
134 aa  95.1  3e-19  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.65243  n/a   
 
 
-
 
NC_008726  Mvan_4306  glyoxalase/bleomycin resistance protein/dioxygenase  35.17 
 
 
161 aa  95.1  3e-19  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.725625 
 
 
-
 
NC_011060  Ppha_1170  methylmalonyl-CoA epimerase  34.33 
 
 
135 aa  95.1  3e-19  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.107967  n/a   
 
 
-
 
NC_009077  Mjls_3851  methylmalonyl-CoA epimerase  36.81 
 
 
156 aa  94.7  4e-19  Mycobacterium sp. JLS  Bacteria  normal  hitchhiker  0.00602371 
 
 
-
 
NC_009667  Oant_2407  methylmalonyl-CoA epimerase  38.35 
 
 
134 aa  94.4  4e-19  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.914364  n/a   
 
 
-
 
NC_007512  Plut_1289  lactoylglutathione lyase  37.12 
 
 
137 aa  94  6e-19  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_2590  glyoxalase/bleomycin resistance protein/dioxygenase  39.55 
 
 
134 aa  93.6  8e-19  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.223231  normal 
 
 
-
 
NC_010511  M446_4406  methylmalonyl-CoA epimerase  39.69 
 
 
134 aa  93.6  9e-19  Methylobacterium sp. 4-46  Bacteria  normal  0.865386  normal  0.62826 
 
 
-
 
NC_009505  BOV_0813  methylmalonyl-CoA epimerase  39.1 
 
 
134 aa  92.8  1e-18  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0384  methylmalonyl-CoA epimerase  37.69 
 
 
133 aa  92  2e-18  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_2198  methylmalonyl-CoA epimerase  38.93 
 
 
136 aa  91.7  4e-18  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR0818  glyoxalase family protein  39.1 
 
 
134 aa  90.9  5e-18  Brucella suis 1330  Bacteria  normal  0.688033  n/a   
 
 
-
 
NC_007802  Jann_3164  methylmalonyl-CoA epimerase  36.64 
 
 
134 aa  90.9  5e-18  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_2869  glyoxalase/bleomycin resistance protein/dioxygenase  38.06 
 
 
134 aa  90.9  5e-18  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.15489  normal  0.392807 
 
 
-
 
NC_008639  Cpha266_1167  methylmalonyl-CoA epimerase  34.59 
 
 
135 aa  90.9  5e-18  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.217696  n/a   
 
 
-
 
NC_010831  Cphamn1_1175  methylmalonyl-CoA epimerase  37.59 
 
 
134 aa  90.5  7e-18  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.0281042 
 
 
-
 
NC_009485  BBta_4545  methylmalonyl-CoA epimerase  38.17 
 
 
134 aa  90.5  7e-18  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0847692  normal  0.36006 
 
 
-
 
NC_009719  Plav_3210  methylmalonyl-CoA epimerase  35.88 
 
 
134 aa  90.1  9e-18  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.0791094  normal 
 
 
-
 
NC_009565  TBFG_11354  hypothetical protein  40.16 
 
 
151 aa  90.1  1e-17  Mycobacterium tuberculosis F11  Bacteria  normal  0.498935  normal 
 
 
-
 
NC_010172  Mext_1069  methylmalonyl-CoA epimerase  35.88 
 
 
134 aa  89  2e-17  Methylobacterium extorquens PA1  Bacteria  normal  0.17549  normal  0.247158 
 
 
-
 
NC_007493  RSP_0812  methylmalonyl-CoA epimerase  37.4 
 
 
134 aa  89.4  2e-17  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_4617  methylmalonyl-CoA epimerase  35.11 
 
 
134 aa  88.6  2e-17  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.0621953 
 
 
-
 
NC_011757  Mchl_1198  methylmalonyl-CoA epimerase  35.88 
 
 
134 aa  89  2e-17  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_2892  methylmalonyl-CoA epimerase  38.35 
 
 
141 aa  89  2e-17  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.20735 
 
 
-
 
NC_009049  Rsph17029_2469  glyoxalase/bleomycin resistance protein/dioxygenase  37.4 
 
 
134 aa  88.6  3e-17  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.186921 
 
 
-
 
NC_010725  Mpop_1003  methylmalonyl-CoA epimerase  35.11 
 
 
134 aa  88.2  4e-17  Methylobacterium populi BJ001  Bacteria  normal  0.0862504  normal  0.205859 
 
 
-
 
NC_010505  Mrad2831_2043  methylmalonyl-CoA epimerase  37.4 
 
 
134 aa  87.8  4e-17  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.370344  normal 
 
 
-
 
NC_007514  Cag_1126  hypothetical protein  34.56 
 
 
135 aa  87.4  6e-17  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0877  methylmalonyl-CoA epimerase  34.59 
 
 
134 aa  87.4  6e-17  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.157449  normal  0.0450617 
 
 
-
 
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