163 homologs were found in PanDaTox collection
for query gene Rsph17025_3295 on replicon NC_009429
Organism: Rhodobacter sphaeroides ATCC 17025



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009429  Rsph17025_3295  KDPG and KHG aldolase  100 
 
 
349 aa  713    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.122481  normal  0.808807 
 
 
-
 
NC_009050  Rsph17029_4032  TRAP transporter solute receptor TAXI family protein  82.81 
 
 
348 aa  592  1e-168  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0151449  normal  0.772934 
 
 
-
 
NC_007494  RSP_3299  TRAP-T family transporter periplasmic binding component  82.23 
 
 
348 aa  588  1e-167  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.783922  n/a   
 
 
-
 
NC_009952  Dshi_1924  putative TRAP transporter solute receptor  62.17 
 
 
350 aa  409  1e-113  Dinoroseobacter shibae DFL 12  Bacteria  hitchhiker  0.00617183  hitchhiker  0.0000000000275167 
 
 
-
 
NC_010676  Bphyt_4887  TRAP transporter solute receptor, TAXI family  35.05 
 
 
358 aa  143  3e-33  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0373897  normal  0.393187 
 
 
-
 
NC_007952  Bxe_B1781  hypothetical protein  33.68 
 
 
357 aa  137  3.0000000000000003e-31  Burkholderia xenovorans LB400  Bacteria  normal  0.568147  unclonable  0.000000000964145 
 
 
-
 
NC_010623  Bphy_3359  TRAP transporter solute receptor TAXI family protein  33.56 
 
 
366 aa  130  5.0000000000000004e-29  Burkholderia phymatum STM815  Bacteria  normal  0.767293  hitchhiker  0.000000000800909 
 
 
-
 
NC_008781  Pnap_3559  TRAP-type uncharacterized transport system protein, periplasmic component  29.25 
 
 
357 aa  113  4.0000000000000004e-24  Polaromonas naphthalenivorans CJ2  Bacteria  decreased coverage  0.00321852  normal 
 
 
-
 
NC_009485  BBta_0245  TRAP-type uncharacterized transporter domain-containing protein  30.63 
 
 
391 aa  108  1e-22  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6523  TRAP-type uncharacterized transporter domain-containing protein  30.74 
 
 
387 aa  108  1e-22  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1321  TRAP-type uncharacterized transport system periplasmic component-like protein  28.67 
 
 
362 aa  101  2e-20  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.107503 
 
 
-
 
NC_011894  Mnod_2296  TRAP-type uncharacterized transport system periplasmic component-like protein  29.1 
 
 
370 aa  95.9  1e-18  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3259  TRAP-type uncharacterized transport system protein, periplasmic component  29.48 
 
 
374 aa  94.7  2e-18  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.27469  normal 
 
 
-
 
NC_011894  Mnod_0528  hypothetical protein  29.47 
 
 
387 aa  94.7  2e-18  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_3808  hypothetical protein  28.22 
 
 
367 aa  92  1e-17  Methylobacterium extorquens PA1  Bacteria  normal  0.312034  normal 
 
 
-
 
NC_010511  M446_5709  hypothetical protein  26.2 
 
 
381 aa  92  1e-17  Methylobacterium sp. 4-46  Bacteria  normal  hitchhiker  0.00407946 
 
 
-
 
NC_008686  Pden_0664  TRAP transporter solute receptor TAXI family protein  32.44 
 
 
333 aa  92  1e-17  Paracoccus denitrificans PD1222  Bacteria  normal  0.613063  normal 
 
 
-
 
NC_011757  Mchl_0224  hypothetical protein  27.87 
 
 
367 aa  90.5  4e-17  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_0064  hypothetical protein  27.87 
 
 
363 aa  90.1  5e-17  Methylobacterium populi BJ001  Bacteria  normal  normal  0.257348 
 
 
-
 
NC_009380  Strop_1697  TRAP transporter solute receptor TAXI family protein  35.2 
 
 
330 aa  87.8  3e-16  Salinispora tropica CNB-440  Bacteria  normal  0.607751  normal  0.828936 
 
 
-
 
NC_014150  Bmur_0797  TRAP transporter solute receptor, TAXI family  30.08 
 
 
318 aa  85.1  0.000000000000002  Brachyspira murdochii DSM 12563  Bacteria  hitchhiker  0.00000423237  n/a   
 
 
-
 
NC_008044  TM1040_1252  TRAP transporter solute receptor TAXI family protein  30 
 
 
323 aa  84  0.000000000000003  Ruegeria sp. TM1040  Bacteria  normal  0.0250918  normal 
 
 
-
 
NC_009953  Sare_1695  TRAP transporter solute receptor TAXI family protein  36.07 
 
 
315 aa  84  0.000000000000004  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.000228802 
 
 
-
 
NC_010511  M446_3556  hypothetical protein  25.61 
 
 
387 aa  83.2  0.000000000000006  Methylobacterium sp. 4-46  Bacteria  normal  0.961167  normal  0.112141 
 
 
-
 
NC_009485  BBta_6916  hypothetical protein  25.16 
 
 
420 aa  80.5  0.00000000000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.633643 
 
 
-
 
NC_013889  TK90_1890  TRAP transporter solute receptor, TAXI family  30.56 
 
 
333 aa  80.1  0.00000000000005  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.966009  normal 
 
 
-
 
NC_008554  Sfum_2942  TRAP transporter solute receptor TAXI family protein  28.62 
 
 
345 aa  80.1  0.00000000000005  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_2429  TRAP transporter solute receptor TAXI family protein  29.32 
 
 
329 aa  80.1  0.00000000000005  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.25673  n/a   
 
 
-
 
NC_007963  Csal_2671  TRAP transporter solute receptor TAXI family protein  29.83 
 
 
325 aa  78.2  0.0000000000002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6514  TRAP-type uncharacterized transporter domain-containing protein  27.67 
 
 
361 aa  73.9  0.000000000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0948459  normal 
 
 
-
 
NC_009439  Pmen_4446  TRAP transporter solute receptor TAXI family protein  29.92 
 
 
323 aa  72.8  0.000000000008  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_0725  TRAP transporter solute receptor, TAXI family  29.92 
 
 
322 aa  72.8  0.000000000009  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_1063  TRAP transporter solute receptor TAXI family protein  29.49 
 
 
317 aa  72  0.00000000001  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.745912 
 
 
-
 
NC_009485  BBta_7227  hypothetical protein  27.37 
 
 
391 aa  72.4  0.00000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.725548  normal 
 
 
-
 
NC_014212  Mesil_2520  TRAP transporter solute receptor, TAXI family  31.96 
 
 
335 aa  71.6  0.00000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_012029  Hlac_2329  TRAP transporter solute receptor, TAXI family  28.32 
 
 
349 aa  71.2  0.00000000003  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  normal  0.809783 
 
 
-
 
NC_013093  Amir_1445  TRAP transporter solute receptor, TAXI family  27.66 
 
 
307 aa  70.9  0.00000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_1175  TRAP transporter solute receptor TAXI family protein  30.42 
 
 
330 aa  70.5  0.00000000004  Ruegeria sp. TM1040  Bacteria  normal  0.155667  normal  0.336664 
 
 
-
 
NC_010511  M446_5576  hypothetical protein  24.75 
 
 
423 aa  70.1  0.00000000005  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009714  CHAB381_0539  immunogenic protein  28.57 
 
 
313 aa  70.5  0.00000000005  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3723  TRAP transporter solute receptor TAXI family protein  26.01 
 
 
316 aa  69.7  0.00000000007  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR1194  TRAP transporter solute receptor TAXI family protein  28.12 
 
 
329 aa  69.7  0.00000000008  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_007494  RSP_1413  TRAP-T family transporter periplasmic binding component  28.62 
 
 
324 aa  69.3  0.00000000008  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I0356  hypothetical protein  29.53 
 
 
324 aa  69.3  0.00000000008  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.097907  n/a   
 
 
-
 
NC_009050  Rsph17029_3483  TRAP transporter solute receptor TAXI family protein  28.62 
 
 
324 aa  69.3  0.00000000008  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_013512  Sdel_0314  TRAP transporter solute receptor, TAXI family  27.15 
 
 
317 aa  69.7  0.00000000008  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  0.889469  n/a   
 
 
-
 
NC_009505  BOV_1156  31 kDa immunogenic protein  28.12 
 
 
316 aa  68.9  0.0000000001  Brucella ovis ATCC 25840  Bacteria  normal  0.837242  n/a   
 
 
-
 
NC_013202  Hmuk_0881  TRAP transporter solute receptor, TAXI family  26.99 
 
 
346 aa  68.9  0.0000000001  Halomicrobium mukohataei DSM 12286  Archaea  decreased coverage  0.000456072  normal  0.0650778 
 
 
-
 
NC_011729  PCC7424_4573  TRAP transporter solute receptor, TAXI family  29.36 
 
 
446 aa  68.9  0.0000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007948  Bpro_2004  TRAP transporter solute receptor TAXI family protein  28.46 
 
 
338 aa  68.6  0.0000000002  Polaromonas sp. JS666  Bacteria  normal  0.373091  normal 
 
 
-
 
NC_013946  Mrub_2391  TAXI family TRAP transporter solute receptor  32.95 
 
 
333 aa  68.2  0.0000000002  Meiothermus ruber DSM 1279  Bacteria  decreased coverage  0.0000115458  normal  0.82394 
 
 
-
 
NC_014212  Mesil_2159  TRAP transporter solute receptor, TAXI family  29.48 
 
 
317 aa  68.2  0.0000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  0.239874  normal  0.13141 
 
 
-
 
NC_009379  Pnuc_0468  TRAP transporter solute receptor TAXI family protein  26.48 
 
 
316 aa  67.8  0.0000000003  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1764  TRAP transporter solute receptor TAXI family protein  30.65 
 
 
323 aa  67.8  0.0000000003  Marinomonas sp. MWYL1  Bacteria  normal  0.513988  normal 
 
 
-
 
NC_013946  Mrub_1635  TAXI family TRAP transporter solute receptor  27.78 
 
 
315 aa  67.8  0.0000000003  Meiothermus ruber DSM 1279  Bacteria  normal  0.0832335  normal 
 
 
-
 
NC_013595  Sros_1537  hypothetical protein  32.95 
 
 
318 aa  67.4  0.0000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  0.391308  normal  0.296954 
 
 
-
 
NC_009429  Rsph17025_3688  hypothetical protein  28.87 
 
 
324 aa  67  0.0000000004  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.269569 
 
 
-
 
NC_009783  VIBHAR_00793  hypothetical protein  29.58 
 
 
322 aa  67.4  0.0000000004  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009253  Dred_3213  TRAP transporter solute receptor TAXI family protein  28.41 
 
 
325 aa  66.6  0.0000000005  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_010531  Pnec_1346  TRAP transporter solute receptor, TAXI family  29.75 
 
 
316 aa  66.6  0.0000000006  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  0.331988  hitchhiker  0.00000684502 
 
 
-
 
NC_002939  GSU2692  immunogenic protein family protein  28.69 
 
 
329 aa  66.2  0.0000000007  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2063  TRAP transporter solute receptor TAXI family protein  27.97 
 
 
327 aa  66.2  0.0000000008  Marinobacter aquaeolei VT8  Bacteria  normal  0.800081  n/a   
 
 
-
 
NC_013926  Aboo_1472  TRAP transporter solute receptor, TAXI family  27.94 
 
 
651 aa  66.2  0.0000000008  Aciduliprofundum boonei T469  Archaea  normal  n/a   
 
 
-
 
NC_008254  Meso_0177  TRAP transporter solute receptor TAXI family protein  28.4 
 
 
326 aa  66.2  0.0000000009  Chelativorans sp. BNC1  Bacteria  normal  0.811435  n/a   
 
 
-
 
NC_007802  Jann_2878  TRAP transporter solute receptor TAXI family protein  27.43 
 
 
335 aa  65.9  0.000000001  Jannaschia sp. CCS1  Bacteria  normal  0.082119  normal 
 
 
-
 
NC_007908  Rfer_1040  TRAP transporter solute receptor TAXI family protein  27.24 
 
 
324 aa  65.9  0.000000001  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_0817  TRAP transporter solute receptor, TAXI family  28.24 
 
 
318 aa  65.5  0.000000001  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  unclonable  0.0000000102609  n/a   
 
 
-
 
NC_008340  Mlg_2072  TRAP transporter solute receptor TAXI family protein  26.43 
 
 
317 aa  64.7  0.000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.169091 
 
 
-
 
NC_013456  VEA_001678  TRAP transporter solute receptor TAXI family precursor  28.03 
 
 
322 aa  65.1  0.000000002  Vibrio sp. Ex25  Bacteria  normal  0.150837  n/a   
 
 
-
 
NC_009073  Pcal_0207  TRAP transporter solute receptor TAXI family protein  30.18 
 
 
371 aa  64.3  0.000000003  Pyrobaculum calidifontis JCM 11548  Archaea  n/a    normal  0.979925 
 
 
-
 
NC_009457  VC0395_A2848  immunogenic protein  29.01 
 
 
328 aa  64.3  0.000000003  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_0741  TRAP transporter solute receptor TAXI family protein  28.93 
 
 
348 aa  63.9  0.000000004  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_003379  immunogenic protein  27.23 
 
 
323 aa  63.9  0.000000004  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_1509  TRAP transporter solute receptor TAXI family protein  32.72 
 
 
433 aa  63.9  0.000000004  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007204  Psyc_0746  TRAP-T family transporter periplasmic substrate binding subunit  26.46 
 
 
344 aa  62.8  0.000000008  Psychrobacter arcticus 273-4  Bacteria  normal  0.842378  normal 
 
 
-
 
NC_008321  Shewmr4_0461  TRAP transporter solute receptor TAXI family protein  27.9 
 
 
318 aa  62.8  0.000000008  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_3839  TRAP transporter solute receptor TAXI family protein  29.3 
 
 
327 aa  62.8  0.000000008  Sinorhizobium medicae WSM419  Bacteria  normal  0.0135422  normal 
 
 
-
 
NC_007802  Jann_2331  TRAP transporter solute receptor TAXI family protein  27.54 
 
 
322 aa  62.8  0.000000009  Jannaschia sp. CCS1  Bacteria  normal  0.0699297  normal 
 
 
-
 
NC_008322  Shewmr7_3568  TRAP transporter solute receptor TAXI family protein  27.9 
 
 
318 aa  62.8  0.000000009  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_0457  response regulator receiver protein  27.9 
 
 
318 aa  62.8  0.000000009  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0137  TRAP transporter solute receptor TAXI family protein  30.41 
 
 
350 aa  62  0.00000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.507077  n/a   
 
 
-
 
NC_009438  Sputcn32_3381  TRAP transporter solute receptor TAXI family protein  28.09 
 
 
318 aa  62.4  0.00000001  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0033  TRAP transporter solute receptor, TAXI family  26.27 
 
 
319 aa  62.4  0.00000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_3954  periplasmic binding protein, putative  29.75 
 
 
316 aa  62  0.00000002  Pseudomonas putida KT2440  Bacteria  normal  normal  0.391333 
 
 
-
 
NC_011146  Gbem_2365  TRAP transporter solute receptor, TAXI family  29.17 
 
 
328 aa  62  0.00000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_4417  TRAP transporter solute receptor TAXI family protein  27.1 
 
 
348 aa  61.6  0.00000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.0674202 
 
 
-
 
NC_007643  Rru_A0608  TRAP transporter solute receptor TAXI family protein  28.74 
 
 
326 aa  61.2  0.00000003  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.516133  n/a   
 
 
-
 
NC_008312  Tery_4986  TRAP transporter solute receptor TAXI family protein  27.69 
 
 
512 aa  60.8  0.00000003  Trichodesmium erythraeum IMS101  Bacteria  normal  0.354924  normal 
 
 
-
 
NC_009523  RoseRS_3440  TRAP transporter solute receptor TAXI family protein  27.27 
 
 
342 aa  60.8  0.00000003  Roseiflexus sp. RS-1  Bacteria  normal  0.93321  normal  0.103466 
 
 
-
 
NC_009715  CCV52592_0082  immunogenic protein  27.36 
 
 
312 aa  61.2  0.00000003  Campylobacter curvus 525.92  Bacteria  normal  0.0148349  n/a   
 
 
-
 
NC_009802  CCC13826_0649  DNA primase  29.31 
 
 
313 aa  60.8  0.00000003  Campylobacter concisus 13826  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_4024  TRAP transporter solute receptor TAXI family protein  27.35 
 
 
318 aa  60.8  0.00000004  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0433  TRAP transporter solute receptor TAXI family protein  27.35 
 
 
318 aa  60.8  0.00000004  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3828  TRAP transporter solute receptor, TAXI family  27.35 
 
 
318 aa  60.8  0.00000004  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_3901  TRAP transporter solute receptor TAXI family protein  27.35 
 
 
318 aa  60.8  0.00000004  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_4419  TRAP transporter solute receptor TAXI family protein  27.11 
 
 
332 aa  60.1  0.00000006  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.176509  normal  0.291569 
 
 
-
 
NC_013093  Amir_5695  TRAP transporter solute receptor, TAXI family  27.64 
 
 
308 aa  60.1  0.00000006  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_0456  immunogenic-related protein  27.04 
 
 
318 aa  59.7  0.00000007  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011901  Tgr7_1556  TRAP transporter solute receptor TAXI family protein  25.5 
 
 
328 aa  59.3  0.00000009  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0549  TRAP transporter solute receptor TAXI family protein  31.58 
 
 
441 aa  58.9  0.0000001  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.973361 
 
 
-
 
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