More than 300 homologs were found in PanDaTox collection
for query gene Rru_A0645 on replicon NC_007643
Organism: Rhodospirillum rubrum ATCC 11170



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007643  Rru_A0645  ribose-phosphate pyrophosphokinase  100 
 
 
310 aa  630  1e-180  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2258  ribose-phosphate pyrophosphokinase  74.28 
 
 
311 aa  475  1e-133  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.284821  normal 
 
 
-
 
NC_011666  Msil_0174  ribose-phosphate pyrophosphokinase  69.35 
 
 
310 aa  448  1e-125  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_011666  Msil_2165  ribose-phosphate pyrophosphokinase  69.35 
 
 
310 aa  448  1e-125  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010581  Bind_1709  ribose-phosphate pyrophosphokinase  69.68 
 
 
310 aa  447  1.0000000000000001e-124  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.347929  normal  0.21366 
 
 
-
 
NC_004310  BR1533  ribose-phosphate pyrophosphokinase  69.35 
 
 
310 aa  444  1.0000000000000001e-124  Brucella suis 1330  Bacteria  normal  0.987838  n/a   
 
 
-
 
NC_009636  Smed_2257  ribose-phosphate pyrophosphokinase  69.68 
 
 
310 aa  445  1.0000000000000001e-124  Sinorhizobium medicae WSM419  Bacteria  normal  0.441991  normal  0.889784 
 
 
-
 
NC_010725  Mpop_4332  ribose-phosphate pyrophosphokinase  69.68 
 
 
314 aa  443  1e-123  Methylobacterium populi BJ001  Bacteria  normal  0.0649453  normal  0.563505 
 
 
-
 
NC_011757  Mchl_4185  ribose-phosphate pyrophosphokinase  69.35 
 
 
314 aa  441  1e-123  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.849276  normal  0.673311 
 
 
-
 
NC_009720  Xaut_2553  ribose-phosphate pyrophosphokinase  70 
 
 
317 aa  442  1e-123  Xanthobacter autotrophicus Py2  Bacteria  normal  0.391347  normal 
 
 
-
 
NC_008254  Meso_2155  ribose-phosphate pyrophosphokinase  69.35 
 
 
310 aa  442  1e-123  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_1634  ribose-phosphate pyrophosphokinase  69.03 
 
 
310 aa  441  1e-123  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.692153  n/a   
 
 
-
 
NC_009505  BOV_1482  ribose-phosphate pyrophosphokinase  69.35 
 
 
328 aa  444  1e-123  Brucella ovis ATCC 25840  Bacteria  decreased coverage  0.00949997  n/a   
 
 
-
 
NC_009484  Acry_0239  ribose-phosphate pyrophosphokinase  68.39 
 
 
310 aa  439  9.999999999999999e-123  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6610  ribose-phosphate pyrophosphokinase  69.58 
 
 
314 aa  438  9.999999999999999e-123  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.881605  n/a   
 
 
-
 
NC_010505  Mrad2831_1487  ribose-phosphate pyrophosphokinase  68.39 
 
 
314 aa  438  9.999999999999999e-123  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.00209861 
 
 
-
 
NC_011365  Gdia_1089  ribose-phosphate pyrophosphokinase  67.18 
 
 
326 aa  439  9.999999999999999e-123  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6074  ribose-phosphate pyrophosphokinase  69.26 
 
 
316 aa  438  9.999999999999999e-123  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0344609 
 
 
-
 
NC_010172  Mext_3875  ribose-phosphate pyrophosphokinase  69.35 
 
 
346 aa  439  9.999999999999999e-123  Methylobacterium extorquens PA1  Bacteria  normal  0.175586  normal  0.0190503 
 
 
-
 
NC_011989  Avi_3177  ribose-phosphate pyrophosphokinase  68.06 
 
 
310 aa  436  1e-121  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_0971  ribose-phosphate pyrophosphokinase  68.17 
 
 
311 aa  431  1e-120  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_2438  ribose-phosphate pyrophosphokinase  71.7 
 
 
311 aa  431  1e-120  Sphingomonas wittichii RW1  Bacteria  normal  0.167005  normal  0.972576 
 
 
-
 
NC_011369  Rleg2_2763  ribose-phosphate pyrophosphokinase  66.77 
 
 
310 aa  429  1e-119  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0549676  normal 
 
 
-
 
NC_012850  Rleg_3026  ribose-phosphate pyrophosphokinase  66.45 
 
 
310 aa  428  1e-119  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.695746  normal 
 
 
-
 
NC_007925  RPC_1409  ribose-phosphate pyrophosphokinase  68.71 
 
 
317 aa  429  1e-119  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.70704  normal  0.419031 
 
 
-
 
NC_011004  Rpal_4846  ribose-phosphate pyrophosphokinase  68.06 
 
 
317 aa  421  1e-117  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_2501  ribose-phosphate pyrophosphokinase  67.42 
 
 
331 aa  418  1e-116  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.534013 
 
 
-
 
NC_007958  RPD_3879  ribose-phosphate pyrophosphokinase  67.42 
 
 
317 aa  418  1e-116  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.409064  normal 
 
 
-
 
NC_009485  BBta_1761  ribose-phosphate pyrophosphokinase  67.1 
 
 
317 aa  415  9.999999999999999e-116  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_3091  ribose-phosphate pyrophosphokinase  66.45 
 
 
317 aa  414  9.999999999999999e-116  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_2942  ribose-phosphate pyrophosphokinase  69.13 
 
 
311 aa  416  9.999999999999999e-116  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.851382 
 
 
-
 
NC_008783  BARBAKC583_0998  ribose-phosphate pyrophosphokinase  64.19 
 
 
310 aa  412  1e-114  Bartonella bacilliformis KC583  Bacteria  normal  0.0838998  n/a   
 
 
-
 
NC_007778  RPB_4168  ribose-phosphate pyrophosphokinase  66.45 
 
 
317 aa  410  1e-113  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.384244  normal  0.332215 
 
 
-
 
NC_010338  Caul_0671  ribose-phosphate pyrophosphokinase  65.38 
 
 
312 aa  397  1e-109  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_3823  ribose-phosphate pyrophosphokinase  60.13 
 
 
339 aa  372  1e-102  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008347  Mmar10_0759  ribose-phosphate pyrophosphokinase  59.68 
 
 
310 aa  372  1e-102  Maricaulis maris MCS10  Bacteria  normal  normal  0.462965 
 
 
-
 
NC_007498  Pcar_2004  phosphoribosyl pyrophosphate synthetase  57.93 
 
 
312 aa  362  3e-99  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.0000000000000613984  n/a   
 
 
-
 
NC_009952  Dshi_2931  ribose-phosphate pyrophosphokinase  57.1 
 
 
340 aa  362  5.0000000000000005e-99  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.134005  normal  0.0220495 
 
 
-
 
NC_007614  Nmul_A0589  ribose-phosphate pyrophosphokinase  57.88 
 
 
316 aa  359  3e-98  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_1053  ribose-phosphate pyrophosphokinase  55.21 
 
 
342 aa  359  4e-98  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_0387  ribose-phosphate pyrophosphokinase  57.37 
 
 
316 aa  356  1.9999999999999998e-97  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.0198132 
 
 
-
 
NC_007493  RSP_2301  phosphoribosyl pyrophosphate synthetase  57.59 
 
 
339 aa  357  1.9999999999999998e-97  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.320704  n/a   
 
 
-
 
NC_009049  Rsph17029_0976  ribose-phosphate pyrophosphokinase  57.59 
 
 
339 aa  357  1.9999999999999998e-97  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.508643  normal 
 
 
-
 
NC_008044  TM1040_2075  ribose-phosphate pyrophosphokinase  55.38 
 
 
340 aa  357  1.9999999999999998e-97  Ruegeria sp. TM1040  Bacteria  normal  0.344649  normal 
 
 
-
 
NC_011206  Lferr_2385  ribose-phosphate pyrophosphokinase  58.52 
 
 
315 aa  356  2.9999999999999997e-97  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.90823 
 
 
-
 
NC_009428  Rsph17025_2199  ribose-phosphate pyrophosphokinase  57.28 
 
 
339 aa  356  2.9999999999999997e-97  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_2766  ribose-phosphate pyrophosphokinase  58.52 
 
 
315 aa  356  2.9999999999999997e-97  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.244437  n/a   
 
 
-
 
NC_008340  Mlg_0283  ribose-phosphate pyrophosphokinase  57.56 
 
 
318 aa  354  1e-96  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_0989  ribose-phosphate pyrophosphokinase  58.52 
 
 
318 aa  352  5e-96  Halorhodospira halophila SL1  Bacteria  normal  0.697734  n/a   
 
 
-
 
NC_007947  Mfla_0678  ribose-phosphate pyrophosphokinase  54.84 
 
 
311 aa  348  9e-95  Methylobacillus flagellatus KT  Bacteria  normal  0.585206  normal 
 
 
-
 
NC_002939  GSU0661  ribose-phosphate pyrophosphokinase  55.34 
 
 
314 aa  346  2e-94  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3730  ribose-phosphate pyrophosphokinase  57.23 
 
 
316 aa  346  2e-94  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.322716 
 
 
-
 
NC_012039  Cla_1270  ribose-phosphate pyrophosphokinase  54.22 
 
 
309 aa  345  5e-94  Campylobacter lari RM2100  Bacteria  normal  0.0133436  n/a   
 
 
-
 
NC_011662  Tmz1t_3627  ribose-phosphate pyrophosphokinase  56.45 
 
 
316 aa  343  2e-93  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_1920  ribose-phosphate pyrophosphokinase  55.45 
 
 
321 aa  342  2.9999999999999997e-93  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA1056  ribose-phosphate pyrophosphokinase  57.28 
 
 
311 aa  342  4e-93  Methylococcus capsulatus str. Bath  Bacteria  normal  0.550032  n/a   
 
 
-
 
NC_011891  A2cp1_0139  ribose-phosphate pyrophosphokinase  54.84 
 
 
321 aa  342  5e-93  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0128  ribose-phosphate pyrophosphokinase  54.84 
 
 
321 aa  342  5e-93  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_0125  ribose-phosphate pyrophosphokinase  54.19 
 
 
321 aa  342  5.999999999999999e-93  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.0779969  normal  0.177896 
 
 
-
 
NC_010524  Lcho_3498  ribose-phosphate pyrophosphokinase  55.45 
 
 
320 aa  342  7e-93  Leptothrix cholodnii SP-6  Bacteria  n/a    decreased coverage  0.00000000549461 
 
 
-
 
NC_009707  JJD26997_0896  ribose-phosphate pyrophosphokinase  55.34 
 
 
309 aa  341  9e-93  Campylobacter jejuni subsp. doylei 269.97  Bacteria  hitchhiker  0.00634031  n/a   
 
 
-
 
NC_007760  Adeh_0121  ribose-phosphate pyrophosphokinase  54.84 
 
 
321 aa  341  9e-93  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.917582  n/a   
 
 
-
 
NC_012918  GM21_1472  ribose-phosphate pyrophosphokinase  54.34 
 
 
316 aa  341  1e-92  Geobacter sp. M21  Bacteria  n/a    normal  0.0157862 
 
 
-
 
NC_003912  CJE0996  ribose-phosphate pyrophosphokinase  55.34 
 
 
309 aa  340  1e-92  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_008787  CJJ81176_0925  ribose-phosphate pyrophosphokinase  55.34 
 
 
309 aa  341  1e-92  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  0.0148542  n/a   
 
 
-
 
NC_011146  Gbem_2768  ribose-phosphate pyrophosphokinase  54.34 
 
 
316 aa  340  1e-92  Geobacter bemidjiensis Bem  Bacteria  normal  0.0630543  n/a   
 
 
-
 
NC_009715  CCV52592_1446  ribose-phosphate pyrophosphokinase  54.37 
 
 
309 aa  340  2e-92  Campylobacter curvus 525.92  Bacteria  normal  0.0807513  n/a   
 
 
-
 
NC_009714  CHAB381_1256  ribose-phosphate pyrophosphokinase  53.4 
 
 
311 aa  340  2e-92  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_0514  ribose-phosphate pyrophosphokinase  56.09 
 
 
336 aa  339  2.9999999999999998e-92  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2848  ribose-phosphate pyrophosphokinase  53.72 
 
 
314 aa  339  2.9999999999999998e-92  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00000330674  hitchhiker  0.0000000000848542 
 
 
-
 
NC_010531  Pnec_1625  ribose-phosphate pyrophosphokinase  55.13 
 
 
321 aa  339  2.9999999999999998e-92  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  0.765759  normal 
 
 
-
 
NC_008599  CFF8240_1474  ribose-phosphate pyrophosphokinase  54.19 
 
 
309 aa  340  2.9999999999999998e-92  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_0307  ribose-phosphate pyrophosphokinase  54.37 
 
 
309 aa  339  4e-92  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  0.918252  n/a   
 
 
-
 
NC_008530  LGAS_0212  phosphoribosylpyrophosphate synthetase  52.9 
 
 
327 aa  339  4e-92  Lactobacillus gasseri ATCC 33323  Bacteria  normal  hitchhiker  0.00571516 
 
 
-
 
NC_009483  Gura_3682  ribose-phosphate pyrophosphokinase  54.34 
 
 
316 aa  338  5e-92  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.0000078681  n/a   
 
 
-
 
NC_013889  TK90_0345  ribose-phosphate pyrophosphokinase  54.37 
 
 
311 aa  338  5.9999999999999996e-92  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.276335 
 
 
-
 
NC_008609  Ppro_0743  ribose-phosphate pyrophosphokinase  54.05 
 
 
314 aa  338  5.9999999999999996e-92  Pelobacter propionicus DSM 2379  Bacteria  normal  0.549423  n/a   
 
 
-
 
NC_009457  VC0395_A1760  ribose-phosphate pyrophosphokinase  53.33 
 
 
314 aa  338  7e-92  Vibrio cholerae O395  Bacteria  unclonable  0.0000000000000290937  n/a   
 
 
-
 
NC_009513  Lreu_0221  ribose-phosphate pyrophosphokinase  51.13 
 
 
329 aa  337  9.999999999999999e-92  Lactobacillus reuteri DSM 20016  Bacteria  decreased coverage  0.000000000342806  n/a   
 
 
-
 
NC_008740  Maqu_2365  ribose-phosphate pyrophosphokinase  55.24 
 
 
316 aa  337  9.999999999999999e-92  Marinobacter aquaeolei VT8  Bacteria  normal  0.870749  n/a   
 
 
-
 
NC_007644  Moth_0076  ribose-phosphate pyrophosphokinase  54.02 
 
 
322 aa  337  9.999999999999999e-92  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_3256  ribose-phosphate diphosphokinase  53.38 
 
 
313 aa  337  9.999999999999999e-92  Saccharophagus degradans 2-40  Bacteria  normal  0.670875  normal  0.0151507 
 
 
-
 
NC_007973  Rmet_0289  ribose-phosphate pyrophosphokinase  54.52 
 
 
317 aa  337  9.999999999999999e-92  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_1168  ribose-phosphate pyrophosphokinase  52.88 
 
 
318 aa  337  9.999999999999999e-92  Halothiobacillus neapolitanus c2  Bacteria  normal  0.613331  n/a   
 
 
-
 
NC_009783  VIBHAR_01246  ribose-phosphate pyrophosphokinase  53.48 
 
 
311 aa  337  1.9999999999999998e-91  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010814  Glov_2595  ribose-phosphate pyrophosphokinase  54.37 
 
 
314 aa  336  1.9999999999999998e-91  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.00599255  n/a   
 
 
-
 
NC_009674  Bcer98_0045  ribose-phosphate pyrophosphokinase  53.7 
 
 
317 aa  337  1.9999999999999998e-91  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.993888  n/a   
 
 
-
 
NC_013456  VEA_004207  ribose-phosphate pyrophosphokinase  53.33 
 
 
314 aa  336  2.9999999999999997e-91  Vibrio sp. Ex25  Bacteria  unclonable  0.0000000977539  n/a   
 
 
-
 
NC_003295  RSc0395  ribose-phosphate pyrophosphokinase  54.02 
 
 
316 aa  336  3.9999999999999995e-91  Ralstonia solanacearum GMI1000  Bacteria  hitchhiker  0.00089412  normal 
 
 
-
 
NC_009439  Pmen_1055  ribose-phosphate pyrophosphokinase  55.48 
 
 
310 aa  335  3.9999999999999995e-91  Pseudomonas mendocina ymp  Bacteria  normal  0.973686  normal  0.13758 
 
 
-
 
NC_010682  Rpic_0250  ribose-phosphate pyrophosphokinase  54.34 
 
 
316 aa  335  5.999999999999999e-91  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_0277  ribose-phosphate pyrophosphokinase  54.34 
 
 
316 aa  335  5.999999999999999e-91  Ralstonia pickettii 12D  Bacteria  normal  0.918759  normal 
 
 
-
 
NC_008709  Ping_0911  ribose-phosphate pyrophosphokinase  52.56 
 
 
314 aa  335  7e-91  Psychromonas ingrahamii 37  Bacteria  normal  0.613362  normal  0.368621 
 
 
-
 
NC_003909  BCE_0048  ribose-phosphate pyrophosphokinase  53.7 
 
 
317 aa  335  7e-91  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0059  ribose-phosphate pyrophosphokinase  53.7 
 
 
317 aa  335  7e-91  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0049  ribose-phosphate pyrophosphokinase  53.7 
 
 
317 aa  335  7e-91  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0045  ribose-phosphate pyrophosphokinase  53.7 
 
 
317 aa  335  7e-91  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0049  ribose-phosphate pyrophosphokinase  53.7 
 
 
317 aa  335  7e-91  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0055  ribose-phosphate pyrophosphokinase  53.7 
 
 
317 aa  335  7e-91  Bacillus cereus B4264  Bacteria  normal  0.822435  n/a   
 
 
-
 
NC_011772  BCG9842_B5261  ribose-phosphate pyrophosphokinase  53.7 
 
 
317 aa  335  7e-91  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>