12 homologs were found in PanDaTox collection
for query gene Rru_A0349 on replicon NC_007643
Organism: Rhodospirillum rubrum ATCC 11170



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007643  Rru_A0349  hypothetical protein  100 
 
 
115 aa  234  4e-61  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0270538  n/a   
 
 
-
 
NC_008782  Ajs_2530  putative DNA methylase  63.16 
 
 
928 aa  109  1.0000000000000001e-23  Acidovorax sp. JS42  Bacteria  normal  0.0253553  hitchhiker  0.000494571 
 
 
-
 
NC_008463  PA14_15580  Type II restriction enzyme, methylase subunit  62.11 
 
 
926 aa  108  3e-23  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.000000708191  unclonable  6.0148299999999996e-21 
 
 
-
 
NC_013730  Slin_1962  type II restriction enzyme, methylase subunit  60 
 
 
918 aa  107  7.000000000000001e-23  Spirosoma linguale DSM 74  Bacteria  normal  0.0531091  normal  0.121709 
 
 
-
 
NC_007794  Saro_0261  type II restriction enzyme, methylase subunit  58.95 
 
 
909 aa  102  1e-21  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.504808  n/a   
 
 
-
 
NC_011206  Lferr_1287  putative DNA methylase  56.84 
 
 
932 aa  99.8  1e-20  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  unclonable  0.000000000167364 
 
 
-
 
NC_008786  Veis_1748  putative DNA methylase  56.84 
 
 
928 aa  98.6  2e-20  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.431397 
 
 
-
 
NC_007960  Nham_4499  putative DNA methylase  56.84 
 
 
921 aa  98.2  3e-20  Nitrobacter hamburgensis X14  Bacteria  normal  0.154819  n/a   
 
 
-
 
NC_009656  PSPA7_5334  type II restriction enzyme methylase subunit  57.89 
 
 
926 aa  97.4  5e-20  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_7690  putative type II restriction enzyme, methylase subunit  82.35 
 
 
622 aa  91.7  3e-18  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.212385 
 
 
-
 
NC_011757  Mchl_3315  type II restriction enzyme, methylase subunit  41.76 
 
 
929 aa  58.5  0.00000003  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007484  Noc_1465  hypothetical protein  32.65 
 
 
914 aa  45.4  0.0002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.152551  n/a   
 
 
-
 
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