242 homologs were found in PanDaTox collection
for query gene Rpal_5004 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_5004  response regulator receiver protein  100 
 
 
118 aa  235  1e-61  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.325761  n/a   
 
 
-
 
NC_009429  Rsph17025_3337  hypothetical protein  50 
 
 
130 aa  107  4.0000000000000004e-23  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.244169  normal  0.34569 
 
 
-
 
NC_007493  RSP_1629  response regulator receiver domain-containing protein  48.25 
 
 
129 aa  103  1e-21  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.324074  n/a   
 
 
-
 
NC_009429  Rsph17025_3509  signal transduction histidine kinase  40.35 
 
 
125 aa  75.9  0.0000000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.316868  normal  0.542318 
 
 
-
 
NC_010172  Mext_0773  response regulator receiver  38.52 
 
 
149 aa  73.6  0.0000000000009  Methylobacterium extorquens PA1  Bacteria  normal  0.863112  normal 
 
 
-
 
NC_011894  Mnod_6449  response regulator receiver protein  45.16 
 
 
121 aa  73.6  0.000000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_4234  response regulator receiver protein  44 
 
 
121 aa  73.6  0.000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0312747 
 
 
-
 
NC_010725  Mpop_1920  response regulator receiver protein  45.24 
 
 
126 aa  72.8  0.000000000002  Methylobacterium populi BJ001  Bacteria  normal  normal  0.170402 
 
 
-
 
NC_011757  Mchl_2241  response regulator receiver protein  44.05 
 
 
126 aa  71.6  0.000000000004  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.926249 
 
 
-
 
NC_010172  Mext_1965  response regulator receiver  44.05 
 
 
126 aa  71.2  0.000000000004  Methylobacterium extorquens PA1  Bacteria  normal  0.132523  normal 
 
 
-
 
NC_009620  Smed_4279  response regulator receiver protein  46.15 
 
 
120 aa  70.9  0.000000000006  Sinorhizobium medicae WSM419  Bacteria  normal  0.718019  normal 
 
 
-
 
NC_011894  Mnod_5707  response regulator receiver protein  39.13 
 
 
127 aa  70.5  0.000000000009  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_4798  response regulator receiver protein  41.35 
 
 
120 aa  70.1  0.000000000009  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.107601  normal 
 
 
-
 
NC_011071  Smal_2183  response regulator receiver protein  44.3 
 
 
134 aa  69.3  0.00000000002  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3385  transcriptional regulator, Crp/Fnr family  39.22 
 
 
384 aa  68.2  0.00000000004  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_0060  transcriptional regulator, Crp/Fnr family  36.84 
 
 
384 aa  68.2  0.00000000004  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0109  response regulator receiver  40.19 
 
 
120 aa  67.4  0.00000000006  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011887  Mnod_7970  response regulator receiver and SARP domain protein  34.71 
 
 
160 aa  67  0.00000000008  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.304155  n/a   
 
 
-
 
NC_010338  Caul_1241  signal transduction histidine kinase  40.66 
 
 
631 aa  67  0.00000000009  Caulobacter sp. K31  Bacteria  normal  normal  0.0246477 
 
 
-
 
NC_009720  Xaut_2532  response regulator receiver protein  35.54 
 
 
138 aa  66.6  0.0000000001  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5233  putative transcriptional regulator, Crp/Fnr family  40 
 
 
384 aa  66.2  0.0000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.222219 
 
 
-
 
NC_011368  Rleg2_5235  response regulator receiver protein  39.39 
 
 
131 aa  65.5  0.0000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0801642 
 
 
-
 
NC_010172  Mext_0783  cyclic nucleotide-binding  33.91 
 
 
376 aa  65.9  0.0000000002  Methylobacterium extorquens PA1  Bacteria  normal  0.0359827  normal 
 
 
-
 
NC_011894  Mnod_3759  response regulator receiver protein  37.29 
 
 
127 aa  66.2  0.0000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.514361  n/a   
 
 
-
 
NC_009719  Plav_2023  response regulator receiver protein  37.07 
 
 
159 aa  64.7  0.0000000004  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.0939204  normal  0.968357 
 
 
-
 
NC_007925  RPC_2520  response regulator receiver domain-containing protein  36.36 
 
 
125 aa  65.1  0.0000000004  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.113297  normal  0.478353 
 
 
-
 
NC_011004  Rpal_2363  response regulator receiver protein  38.27 
 
 
122 aa  64.7  0.0000000004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.549917  n/a   
 
 
-
 
NC_009507  Swit_5346  response regulator receiver protein  37.07 
 
 
118 aa  64.7  0.0000000004  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_010510  Mrad2831_6265  response regulator receiver protein  45 
 
 
136 aa  64.7  0.0000000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0074  response regulator receiver protein  33.33 
 
 
129 aa  64.7  0.0000000004  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_2069  response regulator receiver domain-containing protein  35.34 
 
 
123 aa  64.3  0.0000000005  Jannaschia sp. CCS1  Bacteria  normal  0.240465  normal  0.487014 
 
 
-
 
NC_009485  BBta_0677  putative two component-response regulator receiver (CheY-like protein)  39.05 
 
 
104 aa  63.9  0.0000000006  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.339833 
 
 
-
 
NC_011989  Avi_3496  bacteriophytochrome protein  33.33 
 
 
852 aa  63.5  0.0000000009  Agrobacterium vitis S4  Bacteria  normal  0.552776  n/a   
 
 
-
 
NC_011004  Rpal_3180  response regulator receiver protein  40.51 
 
 
124 aa  62.8  0.000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0167969  n/a   
 
 
-
 
NC_009485  BBta_2330  putative bacteriophytochrome  43.9 
 
 
842 aa  63.2  0.000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.766617  normal 
 
 
-
 
NC_010510  Mrad2831_6244  response regulator receiver modulated GAF sensor protein  39.39 
 
 
849 aa  62.4  0.000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1182  response regulator receiver modulated GAF sensor protein  35.24 
 
 
846 aa  62.4  0.000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.75997  n/a   
 
 
-
 
NC_009507  Swit_5270  signal transduction histidine kinase  41.46 
 
 
559 aa  62  0.000000002  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.909185 
 
 
-
 
NC_007794  Saro_1396  response regulator receiver domain-containing protein  34.51 
 
 
117 aa  61.2  0.000000004  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.230809  n/a   
 
 
-
 
NC_007959  Nham_4155  response regulator receiver domain-containing protein  38.75 
 
 
123 aa  61.6  0.000000004  Nitrobacter hamburgensis X14  Bacteria  normal  0.918011  n/a   
 
 
-
 
NC_013132  Cpin_0268  sigma54 specific transcriptional regulator, Fis family  37.8 
 
 
651 aa  60.8  0.000000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4846  response regulator receiver protein  38.39 
 
 
126 aa  60.5  0.000000007  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.211413  normal 
 
 
-
 
NC_009049  Rsph17029_0431  response regulator receiver protein  38 
 
 
124 aa  60.5  0.000000008  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0769354  normal 
 
 
-
 
NC_011894  Mnod_0272  response regulator receiver protein  38.6 
 
 
128 aa  59.7  0.00000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.820027  n/a   
 
 
-
 
NC_007493  RSP_1784  response regulator receiver domain-containing protein  37 
 
 
124 aa  59.7  0.00000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.474362  n/a   
 
 
-
 
NC_007778  RPB_2738  response regulator receiver domain-containing protein  38.75 
 
 
123 aa  60.1  0.00000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.886685 
 
 
-
 
NC_009485  BBta_4411  putative response regulator receiver (CheY-like protein)  33.33 
 
 
131 aa  59.7  0.00000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.514484 
 
 
-
 
NC_010511  M446_6401  response regulator receiver protein  37.97 
 
 
126 aa  58.9  0.00000002  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_4110  response regulator receiver protein  42.17 
 
 
127 aa  58.9  0.00000002  Caulobacter sp. K31  Bacteria  hitchhiker  0.00730632  normal  0.59438 
 
 
-
 
NC_007964  Nham_1793  response regulator receiver domain-containing protein  37.97 
 
 
126 aa  59.3  0.00000002  Nitrobacter hamburgensis X14  Bacteria  normal  0.244756  n/a   
 
 
-
 
NC_010725  Mpop_0475  response regulator receiver protein  38.26 
 
 
129 aa  58.9  0.00000002  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6261  putative response regulator receiver (CheY-like protein)  41.75 
 
 
121 aa  59.3  0.00000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.235266  normal  0.732793 
 
 
-
 
NC_009505  BOV_0099  putative response regulator  39.73 
 
 
124 aa  58.9  0.00000002  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_5585  response regulator receiver protein  31.03 
 
 
124 aa  59.3  0.00000002  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR0102  response regulator, putative  39.73 
 
 
125 aa  58.9  0.00000003  Brucella suis 1330  Bacteria  normal  0.248594  n/a   
 
 
-
 
NC_010338  Caul_0079  signal transduction histidine kinase  37.17 
 
 
639 aa  58.5  0.00000003  Caulobacter sp. K31  Bacteria  normal  normal  0.464916 
 
 
-
 
NC_007958  RPD_2783  response regulator receiver  37.5 
 
 
123 aa  58.5  0.00000003  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.636371 
 
 
-
 
NC_010725  Mpop_5055  signal transduction histidine kinase  35 
 
 
1111 aa  58.5  0.00000003  Methylobacterium populi BJ001  Bacteria  normal  0.372822  normal 
 
 
-
 
NC_010725  Mpop_1296  response regulator receiver protein  39.74 
 
 
136 aa  58.5  0.00000003  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5238  response regulator receiver protein  40.74 
 
 
127 aa  58.5  0.00000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.516097  normal  0.262734 
 
 
-
 
NC_010511  M446_0019  response regulator receiver protein  38.46 
 
 
129 aa  58.5  0.00000003  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0611118 
 
 
-
 
NC_010505  Mrad2831_3234  response regulator receiver protein  31.93 
 
 
207 aa  57.8  0.00000005  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0140449  normal 
 
 
-
 
NC_007406  Nwi_1774  response regulator receiver  36.71 
 
 
126 aa  57.8  0.00000005  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0498529  decreased coverage  0.00379005 
 
 
-
 
NC_011757  Mchl_0440  response regulator receiver protein  41.03 
 
 
130 aa  57.8  0.00000005  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0544928  normal  0.588008 
 
 
-
 
NC_010172  Mext_0407  response regulator receiver  41.03 
 
 
130 aa  57.8  0.00000005  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.459485 
 
 
-
 
NC_011894  Mnod_0022  response regulator receiver and SARP domain protein  38.26 
 
 
142 aa  57.8  0.00000006  Methylobacterium nodulans ORS 2060  Bacteria  hitchhiker  0.000346597  n/a   
 
 
-
 
NC_010581  Bind_3363  response regulator receiver protein  42.31 
 
 
133 aa  57.8  0.00000006  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.387857 
 
 
-
 
NC_010581  Bind_0708  response regulator receiver protein  33.33 
 
 
123 aa  57.4  0.00000007  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.795364  normal  0.880104 
 
 
-
 
NC_010322  PputGB1_2586  response regulator receiver modulated GAF sensor protein  33.62 
 
 
847 aa  57  0.00000008  Pseudomonas putida GB-1  Bacteria  normal  normal  0.251983 
 
 
-
 
NC_012858  Rleg_7150  response regulator  42.16 
 
 
146 aa  57  0.00000008  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_0717  response regulator receiver protein  39.64 
 
 
122 aa  57  0.00000009  Caulobacter sp. K31  Bacteria  normal  0.0892969  normal 
 
 
-
 
NC_011366  Rleg2_6002  response regulator  42.16 
 
 
136 aa  56.2  0.0000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.282143 
 
 
-
 
NC_009667  Oant_0114  response regulator receiver protein  32.48 
 
 
127 aa  56.6  0.0000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.273159  n/a   
 
 
-
 
NC_011369  Rleg2_3034  putative PAS/PAC sensor protein  39.02 
 
 
856 aa  55.5  0.0000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0858916  normal 
 
 
-
 
NC_009719  Plav_0358  signal transduction histidine kinase  33.91 
 
 
602 aa  55.5  0.0000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_011887  Mnod_7958  response regulator receiver protein  33.33 
 
 
124 aa  55.5  0.0000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_0470  response regulator receiver protein  34.23 
 
 
133 aa  55.8  0.0000002  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3092  response regulator receiver protein  33.61 
 
 
124 aa  55.8  0.0000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0555687  normal  0.395265 
 
 
-
 
NC_008048  Sala_1726  response regulator receiver protein  39.13 
 
 
115 aa  55.5  0.0000002  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2866  response regulator receiver  33.61 
 
 
124 aa  55.8  0.0000002  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_2986  response regulator receiver protein  31.58 
 
 
124 aa  55.1  0.0000003  Methylobacterium populi BJ001  Bacteria  normal  0.347118  normal 
 
 
-
 
NC_010505  Mrad2831_2937  response regulator receiver protein  36.52 
 
 
129 aa  55.1  0.0000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.972944  normal 
 
 
-
 
NC_010511  M446_2338  response regulator receiver protein  37.72 
 
 
127 aa  55.5  0.0000003  Methylobacterium sp. 4-46  Bacteria  normal  0.0449719  normal  0.223899 
 
 
-
 
NC_007493  RSP_1262  response regulator receiver protein  32.74 
 
 
195 aa  54.7  0.0000004  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2922  response regulator receiver/SARP domain-containing protein  32.74 
 
 
195 aa  54.7  0.0000004  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0251  hypothetical protein  33.62 
 
 
124 aa  54.7  0.0000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2085  putative two component, sigma54 specific, transcriptional regulator, Fis family  33.33 
 
 
457 aa  55.1  0.0000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_0621  response regulator receiver protein  34 
 
 
120 aa  54.7  0.0000005  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0115  two component, sigma54 specific, transcriptional regulator, Fis family  30.7 
 
 
481 aa  54.7  0.0000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4365  two component, sigma54 specific, transcriptional regulator, Fis family  32.76 
 
 
471 aa  54.3  0.0000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.231326 
 
 
-
 
NC_010717  PXO_03021  regulatory protein  32.77 
 
 
126 aa  53.9  0.0000007  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_4542  PAS sensor protein  31.25 
 
 
1096 aa  53.9  0.0000007  Methylobacterium extorquens PA1  Bacteria  normal  0.220973  normal  0.0899725 
 
 
-
 
NC_013730  Slin_4327  transcriptional regulator, NifA subfamily, Fis Family  34.21 
 
 
875 aa  53.9  0.0000007  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.184763 
 
 
-
 
NC_010501  PputW619_2574  response regulator receiver modulated GAF sensor protein  34.23 
 
 
844 aa  53.9  0.0000008  Pseudomonas putida W619  Bacteria  normal  normal  0.969915 
 
 
-
 
NC_002947  PP_3364  response regulator  33.05 
 
 
847 aa  53.1  0.000001  Pseudomonas putida KT2440  Bacteria  normal  normal  0.427552 
 
 
-
 
NC_007964  Nham_0646  response regulator receiver domain-containing protein  32.73 
 
 
139 aa  53.1  0.000001  Nitrobacter hamburgensis X14  Bacteria  normal  0.452757  n/a   
 
 
-
 
NC_011666  Msil_3299  response regulator receiver protein  42.67 
 
 
123 aa  53.5  0.000001  Methylocella silvestris BL2  Bacteria  n/a    hitchhiker  0.00414312 
 
 
-
 
NC_010581  Bind_1267  response regulator receiver/SARP domain-containing protein  38.46 
 
 
134 aa  53.1  0.000001  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  decreased coverage  0.00862788 
 
 
-
 
NC_008254  Meso_2032  response regulator receiver protein  33.04 
 
 
125 aa  52.8  0.000002  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0604  response regulator receiver protein  34.26 
 
 
147 aa  52.4  0.000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
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