More than 300 homologs were found in PanDaTox collection
for query gene Rpal_0950 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_0950  binding-protein-dependent transport systems inner membrane component  100 
 
 
283 aa  550  1e-155  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.616045  n/a   
 
 
-
 
NC_010623  Bphy_3961  binding-protein-dependent transport systems inner membrane component  67.99 
 
 
287 aa  347  2e-94  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B0493  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  66.9 
 
 
287 aa  343  2e-93  Burkholderia xenovorans LB400  Bacteria  normal  0.114665  normal 
 
 
-
 
NC_010676  Bphyt_4033  binding-protein-dependent transport systems inner membrane component  71.81 
 
 
287 aa  341  7e-93  Burkholderia phytofirmans PsJN  Bacteria  normal  0.753159  normal 
 
 
-
 
NC_007651  BTH_I0037  ABC transporter, permease protein  71.71 
 
 
259 aa  339  2.9999999999999998e-92  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1531  binding-protein-dependent transport systems inner membrane component  68.16 
 
 
295 aa  337  9.999999999999999e-92  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3514  binding-protein-dependent transport systems inner membrane component  65.94 
 
 
295 aa  337  1.9999999999999998e-91  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.739127  n/a   
 
 
-
 
NC_006348  BMA2678  ABC transporter, permease protein  72.58 
 
 
285 aa  331  7.000000000000001e-90  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0253  ABC transporter, permease protein  72.58 
 
 
282 aa  331  7.000000000000001e-90  Burkholderia pseudomallei 1710b  Bacteria  normal  0.735185  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3274  ABC transporter, permease protein  72.58 
 
 
282 aa  331  7.000000000000001e-90  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1853  ABC transporter, permease protein  72.58 
 
 
282 aa  331  7.000000000000001e-90  Burkholderia mallei NCTC 10229  Bacteria  normal  0.989072  n/a   
 
 
-
 
NC_009074  BURPS668_0040  ABC transporter, permease protein  72.58 
 
 
282 aa  331  7.000000000000001e-90  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0040  ABC transporter, permease protein  72.58 
 
 
282 aa  331  7.000000000000001e-90  Burkholderia pseudomallei 1106a  Bacteria  normal  0.522623  n/a   
 
 
-
 
NC_009080  BMA10247_2699  ABC transporter, permease protein  72.58 
 
 
282 aa  331  7.000000000000001e-90  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A3216  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  70.75 
 
 
285 aa  331  9e-90  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_0024  binding-protein-dependent transport systems inner membrane component  70.36 
 
 
285 aa  330  1e-89  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_0033  binding-protein-dependent transport systems inner membrane component  70.36 
 
 
282 aa  330  2e-89  Burkholderia ambifaria MC40-6  Bacteria  normal  0.589022  normal 
 
 
-
 
NC_010084  Bmul_0034  binding-protein-dependent transport systems inner membrane component  65.61 
 
 
285 aa  329  4e-89  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_0038  binding-protein-dependent transport systems inner membrane component  71.37 
 
 
285 aa  329  4e-89  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.090458  n/a   
 
 
-
 
NC_008542  Bcen2424_0032  binding-protein-dependent transport systems inner membrane component  71.37 
 
 
285 aa  329  4e-89  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0051  binding-protein-dependent transport systems inner membrane component  71.37 
 
 
282 aa  328  6e-89  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_5061  binding-protein-dependent transport systems inner membrane component  56.83 
 
 
293 aa  316  3e-85  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.877762  normal  0.739003 
 
 
-
 
NC_011368  Rleg2_5341  binding-protein-dependent transport systems inner membrane component  56.83 
 
 
293 aa  313  1.9999999999999998e-84  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.7364 
 
 
-
 
NC_011989  Avi_3330  ABC transporter membrane spanning protein  53.61 
 
 
295 aa  310  1e-83  Agrobacterium vitis S4  Bacteria  normal  0.730487  n/a   
 
 
-
 
NC_007908  Rfer_3114  binding-protein-dependent transport systems inner membrane component  61.57 
 
 
294 aa  302  3.0000000000000004e-81  Rhodoferax ferrireducens T118  Bacteria  normal  0.0684117  n/a   
 
 
-
 
NC_013131  Caci_5602  binding-protein-dependent transport systems inner membrane component  50.54 
 
 
302 aa  261  1e-68  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.033554  normal  0.953446 
 
 
-
 
NC_008688  Pden_4882  binding-protein-dependent transport systems inner membrane component  45.85 
 
 
259 aa  210  2e-53  Paracoccus denitrificans PD1222  Bacteria  normal  0.947992  normal 
 
 
-
 
NC_009720  Xaut_3212  binding-protein-dependent transport systems inner membrane component  46.75 
 
 
271 aa  203  2e-51  Xanthobacter autotrophicus Py2  Bacteria  normal  0.896165  normal 
 
 
-
 
NC_010622  Bphy_0957  binding-protein-dependent transport systems inner membrane component  44.35 
 
 
274 aa  199  3.9999999999999996e-50  Burkholderia phymatum STM815  Bacteria  normal  0.199065  normal 
 
 
-
 
NC_010678  Rpic_4037  binding-protein-dependent transport systems inner membrane component  40.15 
 
 
276 aa  199  3.9999999999999996e-50  Ralstonia pickettii 12J  Bacteria  normal  0.960786  normal 
 
 
-
 
NC_012857  Rpic12D_4149  binding-protein-dependent transport systems inner membrane component  40.15 
 
 
276 aa  199  3.9999999999999996e-50  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_014213  Mesil_3278  ABC transporter related protein  46.22 
 
 
257 aa  193  3e-48  Meiothermus silvanus DSM 9946  Bacteria  hitchhiker  0.000407876  normal  0.0335836 
 
 
-
 
NC_011004  Rpal_2254  binding-protein-dependent transport systems inner membrane component  45.85 
 
 
264 aa  191  8e-48  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.440017  n/a   
 
 
-
 
NC_007951  Bxe_A2355  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  43.04 
 
 
274 aa  191  1e-47  Burkholderia xenovorans LB400  Bacteria  normal  0.214574  normal  0.0382396 
 
 
-
 
NC_012856  Rpic12D_1136  binding-protein-dependent transport systems inner membrane component  43.72 
 
 
263 aa  191  1e-47  Ralstonia pickettii 12D  Bacteria  normal  0.629035  normal  0.968824 
 
 
-
 
NC_010682  Rpic_1044  binding-protein-dependent transport systems inner membrane component  43.72 
 
 
263 aa  191  1e-47  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc1200  transmembrane permease ABC transporter protein  44.31 
 
 
263 aa  189  4e-47  Ralstonia solanacearum GMI1000  Bacteria  normal  0.441856  normal  0.826922 
 
 
-
 
NC_012791  Vapar_2336  binding-protein-dependent transport systems inner membrane component  40.52 
 
 
277 aa  189  4e-47  Variovorax paradoxus S110  Bacteria  normal  0.544063  n/a   
 
 
-
 
NC_007948  Bpro_2274  binding-protein-dependent transport systems inner membrane component  39.42 
 
 
279 aa  189  5.999999999999999e-47  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1832  binding-protein-dependent transport systems inner membrane component  42.61 
 
 
274 aa  187  2e-46  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.146122 
 
 
-
 
NC_009668  Oant_3590  binding-protein-dependent transport systems inner membrane component  42.42 
 
 
262 aa  186  3e-46  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0261  ABC transporter, permease protein  42.8 
 
 
263 aa  186  5e-46  Brucella ovis ATCC 25840  Bacteria  normal  0.597346  n/a   
 
 
-
 
NC_011894  Mnod_1056  binding-protein-dependent transport systems inner membrane component  40.94 
 
 
266 aa  186  5e-46  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.498595  n/a   
 
 
-
 
NC_007347  Reut_A2103  binding-protein dependent transport system inner membrane protein  43.83 
 
 
263 aa  185  7e-46  Ralstonia eutropha JMP134  Bacteria  normal  0.153016  n/a   
 
 
-
 
NC_010511  M446_1432  binding-protein-dependent transport systems inner membrane component  41.34 
 
 
260 aa  184  1.0000000000000001e-45  Methylobacterium sp. 4-46  Bacteria  normal  0.324199  normal  0.863766 
 
 
-
 
NC_007973  Rmet_2120  binding-protein-dependent transport systems inner membrane component  45.09 
 
 
263 aa  184  1.0000000000000001e-45  Cupriavidus metallidurans CH34  Bacteria  normal  0.0243564  normal  0.0474626 
 
 
-
 
NC_004311  BRA0285  ABC transporter, permease protein  46.05 
 
 
263 aa  184  2.0000000000000003e-45  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2746  binding-protein-dependent transport systems inner membrane component  42.32 
 
 
283 aa  179  4.999999999999999e-44  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6067  ABC transporter permease  43.2 
 
 
261 aa  176  4e-43  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_2107  binding-protein-dependent transport systems inner membrane component  44.83 
 
 
265 aa  172  3.9999999999999995e-42  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.970819 
 
 
-
 
NC_009921  Franean1_4522  binding-protein-dependent transport systems inner membrane component  37.99 
 
 
329 aa  172  5e-42  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3334  binding-protein dependent transport system inner membrane protein  44.02 
 
 
265 aa  164  2.0000000000000002e-39  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.227064  normal  0.190195 
 
 
-
 
NC_011894  Mnod_2256  binding-protein-dependent transport systems inner membrane component  43.19 
 
 
268 aa  159  4e-38  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0231  binding-protein-dependent transport systems inner membrane component  35.2 
 
 
271 aa  157  1e-37  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008254  Meso_2962  binding-protein-dependent transport systems inner membrane component  36.48 
 
 
280 aa  149  4e-35  Chelativorans sp. BNC1  Bacteria  normal  0.0794658  n/a   
 
 
-
 
NC_010320  Teth514_2295  binding-protein-dependent transport systems inner membrane component  31.64 
 
 
272 aa  149  7e-35  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_2777  binding-protein-dependent transport systems inner membrane component  31.27 
 
 
292 aa  146  4.0000000000000006e-34  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1834  binding-protein-dependent transport systems inner membrane component  33.82 
 
 
268 aa  142  6e-33  Desulfotomaculum reducens MI-1  Bacteria  normal  0.101401  n/a   
 
 
-
 
NC_011899  Hore_11490  binding-protein-dependent transport systems inner membrane component  34.12 
 
 
278 aa  140  1.9999999999999998e-32  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000000965537  n/a   
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  30.99 
 
 
281 aa  137  2e-31  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_2621  binding-protein-dependent transport systems inner membrane component  38.38 
 
 
281 aa  135  7.000000000000001e-31  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00000218671  n/a   
 
 
-
 
NC_009012  Cthe_2574  binding-protein-dependent transport systems inner membrane component  35.42 
 
 
270 aa  135  7.000000000000001e-31  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_2561  binding-protein-dependent transport systems inner membrane component  36.55 
 
 
279 aa  134  1.9999999999999998e-30  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  32.53 
 
 
257 aa  133  3e-30  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_2524  binding-protein-dependent transport systems inner membrane component  36.14 
 
 
279 aa  132  5e-30  Mycobacterium sp. MCS  Bacteria  normal  0.667278  n/a   
 
 
-
 
NC_008705  Mkms_2569  binding-protein-dependent transport systems inner membrane component  36.14 
 
 
279 aa  132  5e-30  Mycobacterium sp. KMS  Bacteria  normal  0.568124  normal 
 
 
-
 
NC_011898  Ccel_0879  binding-protein-dependent transport systems inner membrane component  34.66 
 
 
274 aa  130  2.0000000000000002e-29  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00112224  n/a   
 
 
-
 
NC_013411  GYMC61_0589  binding-protein-dependent transport systems inner membrane component  30.86 
 
 
269 aa  130  2.0000000000000002e-29  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009674  Bcer98_3456  binding-protein-dependent transport systems inner membrane component  30.86 
 
 
268 aa  128  9.000000000000001e-29  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.133558  n/a   
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  32.19 
 
 
282 aa  128  1.0000000000000001e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  31.03 
 
 
261 aa  124  1e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_011725  BCB4264_A4903  ABC transporter, permease protein  33.98 
 
 
268 aa  122  6e-27  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS4677  ABC transporter permease  33.33 
 
 
268 aa  122  7e-27  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4536  ABC transporter, permease  33.33 
 
 
268 aa  122  7e-27  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_4902  ABC transporter, permease protein  33.33 
 
 
268 aa  122  7e-27  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007530  GBAA_5038  ABC transporter permease  33.33 
 
 
268 aa  122  7e-27  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B0335  ABC transporter, permease protein  33.98 
 
 
268 aa  122  8e-27  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_4556  binding-protein-dependent transport systems inner membrane component  30.38 
 
 
267 aa  122  9.999999999999999e-27  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4615  binding-protein-dependent transport systems inner membrane component  32.83 
 
 
268 aa  121  9.999999999999999e-27  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3419  binding-protein-dependent transport systems inner membrane component  34.33 
 
 
258 aa  120  1.9999999999999998e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.121812  n/a   
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  29.75 
 
 
273 aa  120  1.9999999999999998e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3093  binding-protein dependent transport system inner membrane protein  34.22 
 
 
259 aa  120  1.9999999999999998e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.942666 
 
 
-
 
NC_009379  Pnuc_1181  binding-protein-dependent transport systems inner membrane component  30.16 
 
 
271 aa  121  1.9999999999999998e-26  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  32.63 
 
 
273 aa  119  4.9999999999999996e-26  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_2784  binding-protein-dependent transport systems inner membrane component  29.41 
 
 
269 aa  119  6e-26  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  28.98 
 
 
249 aa  119  7e-26  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_3181  binding-protein-dependent transport systems inner membrane component  30.15 
 
 
277 aa  118  9.999999999999999e-26  Burkholderia phymatum STM815  Bacteria  normal  0.0283642  normal 
 
 
-
 
NC_007333  Tfu_1306  ABC transporter, permease component  31.84 
 
 
286 aa  118  9.999999999999999e-26  Thermobifida fusca YX  Bacteria  normal  0.334764  n/a   
 
 
-
 
NC_013131  Caci_4306  binding-protein-dependent transport systems inner membrane component  30.52 
 
 
278 aa  118  9.999999999999999e-26  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0649738  hitchhiker  0.00238236 
 
 
-
 
NC_005957  BT9727_4517  ABC transporter, permease  33.72 
 
 
268 aa  117  3e-25  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A4923  ABC transporter, permease protein  33.72 
 
 
268 aa  117  3e-25  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_5601  binding-protein-dependent transport systems inner membrane component  31.09 
 
 
281 aa  116  3.9999999999999997e-25  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_5605  binding-protein-dependent transport systems inner membrane component  33.46 
 
 
265 aa  116  5e-25  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.254441  normal  0.608264 
 
 
-
 
NC_009485  BBta_1169  putative ABC transporter permease protein  30.82 
 
 
279 aa  115  7.999999999999999e-25  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_4937  ABC transporter, permease protein  33.2 
 
 
268 aa  115  8.999999999999998e-25  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_6300  binding-protein-dependent transport systems inner membrane component  30.94 
 
 
272 aa  115  1.0000000000000001e-24  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011059  Paes_0622  binding-protein-dependent transport systems inner membrane component  30.54 
 
 
257 aa  114  2.0000000000000002e-24  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5801  binding-protein dependent transport system inner membrane protein  30.6 
 
 
290 aa  112  6e-24  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3818  binding-protein-dependent transport systems inner membrane component  30.2 
 
 
280 aa  112  6e-24  Conexibacter woesei DSM 14684  Bacteria  normal  0.615395  normal  0.42897 
 
 
-
 
NC_009674  Bcer98_1998  binding-protein-dependent transport systems inner membrane component  28.04 
 
 
283 aa  111  1.0000000000000001e-23  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.894639  n/a   
 
 
-
 
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