More than 300 homologs were found in PanDaTox collection
for query gene Rpal_0286 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_0286  two component transcriptional regulator, winged helix family  100 
 
 
228 aa  465  9.999999999999999e-131  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0381  two component transcriptional regulator  98.25 
 
 
228 aa  457  9.999999999999999e-129  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.638697  normal 
 
 
-
 
NC_007925  RPC_0280  two component transcriptional regulator  96.49 
 
 
228 aa  450  1.0000000000000001e-126  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.123527 
 
 
-
 
NC_007958  RPD_0440  winged helix family two component transcriptional regulator  96.93 
 
 
228 aa  452  1.0000000000000001e-126  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.79352 
 
 
-
 
NC_007406  Nwi_0087  transcriptional regulatory protein  92.11 
 
 
228 aa  435  1e-121  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.701272  normal  0.0818275 
 
 
-
 
NC_009485  BBta_0177  two component transcriptional regulator  93.86 
 
 
228 aa  402  1e-111  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0094  two component transcriptional regulator  93.86 
 
 
228 aa  399  9.999999999999999e-111  Nitrobacter hamburgensis X14  Bacteria  normal  0.402679  n/a   
 
 
-
 
NC_009720  Xaut_1771  two component transcriptional regulator  73.68 
 
 
228 aa  357  9.999999999999999e-98  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.046286 
 
 
-
 
NC_009636  Smed_3056  two component transcriptional regulator  74.55 
 
 
253 aa  342  2.9999999999999997e-93  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_4227  two component response regulator  74.22 
 
 
227 aa  342  2.9999999999999997e-93  Agrobacterium vitis S4  Bacteria  normal  0.0109817  n/a   
 
 
-
 
NC_009505  BOV_1929  DNA-binding response regulator  70.8 
 
 
227 aa  340  1e-92  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR2006  DNA-binding response regulator  70.8 
 
 
227 aa  340  1e-92  Brucella suis 1330  Bacteria  normal  0.347503  n/a   
 
 
-
 
NC_009667  Oant_0965  two component transcriptional regulator  70.8 
 
 
227 aa  339  2e-92  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_4088  two component transcriptional regulator, winged helix family  73.89 
 
 
227 aa  337  7e-92  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3763  two component transcriptional regulator, winged helix family  73.01 
 
 
227 aa  336  1.9999999999999998e-91  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_1289  two component transcriptional regulator  70.18 
 
 
240 aa  333  1e-90  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.101499  normal  0.741023 
 
 
-
 
NC_011666  Msil_0332  two component transcriptional regulator, winged helix family  67.11 
 
 
228 aa  329  2e-89  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0145192 
 
 
-
 
NC_008254  Meso_3424  two component transcriptional regulator  70.54 
 
 
227 aa  321  7e-87  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_0417  two component transcriptional regulator  65.64 
 
 
228 aa  317  1e-85  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_0229  two component transcriptional regulator  64.47 
 
 
228 aa  315  3e-85  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.444604  normal  0.247928 
 
 
-
 
NC_009952  Dshi_0038  two component transcriptional regulator  64.76 
 
 
228 aa  315  3e-85  Dinoroseobacter shibae DFL 12  Bacteria  normal  hitchhiker  0.000503825 
 
 
-
 
NC_007493  RSP_0847  two component transcriptional regulator  67.84 
 
 
228 aa  315  5e-85  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.140263  n/a   
 
 
-
 
NC_009049  Rsph17029_2505  two component transcriptional regulator  67.84 
 
 
228 aa  315  5e-85  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.472327  normal  0.764107 
 
 
-
 
NC_009428  Rsph17025_3128  two component transcriptional regulator  67.4 
 
 
228 aa  313  9.999999999999999e-85  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.780725  hitchhiker  0.000183133 
 
 
-
 
NC_010511  M446_1399  two component transcriptional regulator  64.04 
 
 
228 aa  313  1.9999999999999998e-84  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.11718 
 
 
-
 
NC_008347  Mmar10_2950  two component transcriptional regulator  67.11 
 
 
256 aa  310  1e-83  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1017  two component transcriptional regulator, winged helix family  64.47 
 
 
228 aa  310  1e-83  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_2374  two component transcriptional regulator  64.32 
 
 
228 aa  309  2e-83  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.851486 
 
 
-
 
NC_008044  TM1040_0051  two component transcriptional regulator  63.88 
 
 
228 aa  308  2.9999999999999997e-83  Ruegeria sp. TM1040  Bacteria  normal  normal  0.480932 
 
 
-
 
NC_010505  Mrad2831_4105  two component transcriptional regulator  64.47 
 
 
228 aa  308  5.9999999999999995e-83  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.400488 
 
 
-
 
NC_010338  Caul_5036  two component transcriptional regulator  68.87 
 
 
232 aa  303  1.0000000000000001e-81  Caulobacter sp. K31  Bacteria  normal  normal  0.367828 
 
 
-
 
NC_010725  Mpop_1663  two component transcriptional regulator, winged helix family  63.76 
 
 
228 aa  296  1e-79  Methylobacterium populi BJ001  Bacteria  normal  normal  0.489331 
 
 
-
 
NC_010172  Mext_1576  response regulator receiver  62.28 
 
 
235 aa  296  1e-79  Methylobacterium extorquens PA1  Bacteria  normal  0.630975  normal  0.0547836 
 
 
-
 
NC_011757  Mchl_1855  two component transcriptional regulator, winged helix family  62.28 
 
 
228 aa  296  2e-79  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.848692 
 
 
-
 
NC_011365  Gdia_0044  two component transcriptional regulator, winged helix family  58.87 
 
 
238 aa  266  2e-70  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.164674  normal  0.0215513 
 
 
-
 
NC_008783  BARBAKC583_0059  DNA-binding response regulator  54.95 
 
 
228 aa  264  7e-70  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_2814  two component transcriptional regulator  54.35 
 
 
240 aa  249  2e-65  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A3638  two component transcriptional regulator  43.91 
 
 
270 aa  154  8e-37  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5346  DNA-binding response regulator YycF  38.96 
 
 
235 aa  154  1e-36  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000234523  hitchhiker  0.00000000000323141 
 
 
-
 
NC_011725  BCB4264_A5589  DNA-binding response regulator YycF  38.96 
 
 
235 aa  154  1e-36  Bacillus cereus B4264  Bacteria  normal  0.0469644  n/a   
 
 
-
 
NC_003909  BCE_5615  DNA-binding response regulator YycF  38.96 
 
 
235 aa  153  2e-36  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5319  DNA-binding response regulator YycF  38.96 
 
 
235 aa  153  2e-36  Bacillus anthracis str. Sterne  Bacteria  normal  0.169223  n/a   
 
 
-
 
NC_005957  BT9727_5147  response regulator  38.96 
 
 
235 aa  153  2e-36  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00168683  n/a   
 
 
-
 
NC_011658  BCAH187_A5650  DNA-binding response regulator YycF  38.96 
 
 
235 aa  153  2e-36  Bacillus cereus AH187  Bacteria  hitchhiker  0.00563499  n/a   
 
 
-
 
NC_006274  BCZK5163  response regulator  38.96 
 
 
235 aa  153  2e-36  Bacillus cereus E33L  Bacteria  hitchhiker  0.00196509  n/a   
 
 
-
 
NC_009674  Bcer98_4006  two component transcriptional regulator  38.96 
 
 
235 aa  153  2e-36  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.010356  n/a   
 
 
-
 
NC_007530  GBAA_5715  DNA-binding response regulator YycF  38.96 
 
 
235 aa  153  2e-36  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.656882  n/a   
 
 
-
 
NC_011773  BCAH820_5572  DNA-binding response regulator YycF  38.96 
 
 
235 aa  153  2e-36  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.81316e-29 
 
 
-
 
NC_013440  Hoch_4665  two component transcriptional regulator, winged helix family  38.6 
 
 
235 aa  152  5e-36  Haliangium ochraceum DSM 14365  Bacteria  normal  0.880727  normal  0.209776 
 
 
-
 
NC_012793  GWCH70_3409  two component transcriptional regulator, winged helix family  38.1 
 
 
236 aa  152  5.9999999999999996e-36  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6310  two component transcriptional regulator, winged helix family  39.47 
 
 
261 aa  151  8e-36  Actinosynnema mirum DSM 43827  Bacteria  normal  0.534044  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  38.53 
 
 
235 aa  150  1e-35  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_013411  GYMC61_3538  two component transcriptional regulator, winged helix family  37.93 
 
 
237 aa  149  3e-35  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009767  Rcas_4445  two component transcriptional regulator  39.56 
 
 
229 aa  147  2.0000000000000003e-34  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.14031 
 
 
-
 
NC_009523  RoseRS_0761  two component transcriptional regulator  38.77 
 
 
229 aa  145  4.0000000000000006e-34  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.179681 
 
 
-
 
NC_009380  Strop_0967  response regulator receiver  39.83 
 
 
229 aa  145  5e-34  Salinispora tropica CNB-440  Bacteria  normal  0.359698  normal  0.873584 
 
 
-
 
NC_012669  Bcav_1240  two component transcriptional regulator, winged helix family  39.56 
 
 
227 aa  145  5e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.729355  normal 
 
 
-
 
NC_008530  LGAS_0064  DNA-binding response regulator  38.36 
 
 
235 aa  144  9e-34  Lactobacillus gasseri ATCC 33323  Bacteria  normal  0.611294  normal 
 
 
-
 
NC_007333  Tfu_2496  response regulator receiver  39.73 
 
 
225 aa  144  1e-33  Thermobifida fusca YX  Bacteria  normal  0.491467  n/a   
 
 
-
 
NC_007644  Moth_0070  two component transcriptional regulator  40.79 
 
 
229 aa  144  1e-33  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.834843 
 
 
-
 
NC_013441  Gbro_0997  response regulator receiver  40.27 
 
 
228 aa  144  1e-33  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1304  DNA-binding response regulator  34.51 
 
 
235 aa  143  2e-33  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.18531  n/a   
 
 
-
 
NC_013510  Tcur_4043  two component transcriptional regulator, winged helix family  39.65 
 
 
225 aa  143  2e-33  Thermomonospora curvata DSM 43183  Bacteria  normal  0.728877  n/a   
 
 
-
 
NC_010159  YpAngola_A2763  DNA-binding response regulator  34.51 
 
 
235 aa  143  2e-33  Yersinia pestis Angola  Bacteria  normal  0.0137809  hitchhiker  0.000236663 
 
 
-
 
NC_009953  Sare_0904  two component transcriptional regulator  39.39 
 
 
229 aa  142  3e-33  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0335314 
 
 
-
 
NC_010465  YPK_1414  two component transcriptional regulator  34.07 
 
 
235 aa  142  3e-33  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_2712  two component transcriptional regulator  37.95 
 
 
224 aa  142  5e-33  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.00552555  n/a   
 
 
-
 
NC_013172  Bfae_21090  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  37.72 
 
 
231 aa  142  5e-33  Brachybacterium faecium DSM 4810  Bacteria  normal  0.664911  n/a   
 
 
-
 
NC_013595  Sros_0961  response regulator receiver protein  39.21 
 
 
229 aa  141  9e-33  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_0537  two component transcriptional regulator, winged helix family  38.5 
 
 
224 aa  140  1.9999999999999998e-32  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0716782  n/a   
 
 
-
 
NC_013169  Ksed_08590  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  39.46 
 
 
239 aa  140  1.9999999999999998e-32  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.857083 
 
 
-
 
NC_013061  Phep_0367  response regulator receiver  39.22 
 
 
233 aa  140  1.9999999999999998e-32  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_1374  two component transcriptional regulator  39.06 
 
 
238 aa  140  1.9999999999999998e-32  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_2570  two component transcriptional regulator, winged helix family  39.41 
 
 
239 aa  140  1.9999999999999998e-32  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP2534  DNA-binding response regulator YycF  36.4 
 
 
233 aa  139  3e-32  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_0018  response regulator receiver  36.4 
 
 
233 aa  139  3e-32  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_0018  two component transcriptional regulator  36.4 
 
 
233 aa  139  3e-32  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.70243  n/a   
 
 
-
 
NC_013174  Jden_1827  two component transcriptional regulator, winged helix family  39.29 
 
 
227 aa  139  3e-32  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_3122  two component transcriptional regulator, winged helix family  36.56 
 
 
235 aa  139  3.9999999999999997e-32  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008009  Acid345_4054  two component transcriptional regulator  40.89 
 
 
226 aa  139  3.9999999999999997e-32  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.271916 
 
 
-
 
NC_013530  Xcel_2514  two component transcriptional regulator, winged helix family  39.29 
 
 
226 aa  139  3.9999999999999997e-32  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.24701  n/a   
 
 
-
 
NC_009664  Krad_3815  two component transcriptional regulator, winged helix family  38.77 
 
 
225 aa  138  4.999999999999999e-32  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0278114  normal  0.0118387 
 
 
-
 
NC_010816  BLD_1073  putative response regulator  37.83 
 
 
234 aa  139  4.999999999999999e-32  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_2083  two component transcriptional regulator, winged helix family  38.46 
 
 
237 aa  138  7e-32  Jonesia denitrificans DSM 20603  Bacteria  normal  0.873655  normal 
 
 
-
 
NC_013552  DhcVS_143  DNA-binding response regulator, two-component system, OmpR family  37.34 
 
 
256 aa  137  1e-31  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3703  two component transcriptional regulator  33.91 
 
 
232 aa  137  1e-31  Saccharophagus degradans 2-40  Bacteria  normal  0.230236  normal  0.0884672 
 
 
-
 
NC_011898  Ccel_3394  two component transcriptional regulator, winged helix family  36.56 
 
 
230 aa  137  1e-31  Clostridium cellulolyticum H10  Bacteria  normal  0.103692  n/a   
 
 
-
 
NC_014165  Tbis_0499  winged helix family two component transcriptional regulator  39.56 
 
 
229 aa  137  2e-31  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_007335  PMN2A_0436  two component transcriptional regulator  34.58 
 
 
245 aa  137  2e-31  Prochlorococcus marinus str. NATL2A  Bacteria  normal  0.18923  n/a   
 
 
-
 
NC_013124  Afer_0200  two component transcriptional regulator, winged helix family  38.33 
 
 
242 aa  136  2e-31  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.0955644  n/a   
 
 
-
 
NC_013501  Rmar_0987  two component transcriptional regulator, winged helix family  38.94 
 
 
233 aa  136  2e-31  Rhodothermus marinus DSM 4252  Bacteria  normal  0.195539  n/a   
 
 
-
 
NC_012803  Mlut_14770  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  39.29 
 
 
226 aa  136  2e-31  Micrococcus luteus NCTC 2665  Bacteria  normal  0.383411  n/a   
 
 
-
 
NC_011886  Achl_2443  two component transcriptional regulator, winged helix family  37.5 
 
 
224 aa  136  2e-31  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00121019 
 
 
-
 
NC_013757  Gobs_4285  two component transcriptional regulator, winged helix family  36.8 
 
 
238 aa  137  2e-31  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.83647  n/a   
 
 
-
 
NC_009972  Haur_2799  two component transcriptional regulator  37.33 
 
 
236 aa  136  3.0000000000000003e-31  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.000000368356  n/a   
 
 
-
 
NC_013521  Sked_09340  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  39.91 
 
 
223 aa  136  3.0000000000000003e-31  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.217912  normal  0.763127 
 
 
-
 
NC_010816  BLD_0042  response regulator  39.33 
 
 
240 aa  135  4e-31  Bifidobacterium longum DJO10A  Bacteria  normal  0.382747  n/a   
 
 
-
 
NC_011729  PCC7424_4207  two component transcriptional regulator, winged helix family  39.39 
 
 
247 aa  135  4e-31  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009513  Lreu_0019  two component transcriptional regulator  34.91 
 
 
235 aa  135  4e-31  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A1977  DNA-binding response regulator  37.84 
 
 
229 aa  135  5e-31  Bacillus cereus B4264  Bacteria  normal  0.166768  n/a   
 
 
-
 
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