223 homologs were found in PanDaTox collection
for query gene RoseRS_3940 on replicon NC_009523
Organism: Roseiflexus sp. RS-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009523  RoseRS_3940  extracellular solute-binding protein  100 
 
 
439 aa  847    Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3612  extracellular solute-binding protein  79.46 
 
 
411 aa  578  1e-164  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.423524  normal 
 
 
-
 
NC_011831  Cagg_3483  extracellular solute-binding protein family 1  38.83 
 
 
437 aa  186  6e-46  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_20470  extracellular solute-binding protein family 1  25.9 
 
 
406 aa  133  5e-30  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000403753  n/a   
 
 
-
 
NC_009486  Tpet_1552  extracellular solute-binding protein  27.18 
 
 
391 aa  100  5e-20  Thermotoga petrophila RKU-1  Bacteria  decreased coverage  0.000000398035  n/a   
 
 
-
 
NC_010483  TRQ2_1614  extracellular solute-binding protein  26.91 
 
 
391 aa  97.1  5e-19  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.000159886  n/a   
 
 
-
 
NC_008698  Tpen_1055  extracellular solute-binding protein  25.06 
 
 
418 aa  95.1  2e-18  Thermofilum pendens Hrk 5  Archaea  normal  0.404897  n/a   
 
 
-
 
NC_013411  GYMC61_1511  extracellular solute-binding protein family 1  24.61 
 
 
424 aa  90.9  5e-17  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008698  Tpen_1453  extracellular solute-binding protein  24.62 
 
 
415 aa  87.4  4e-16  Thermofilum pendens Hrk 5  Archaea  normal  0.0104666  n/a   
 
 
-
 
NC_010483  TRQ2_0984  extracellular solute-binding protein  24.27 
 
 
392 aa  86.3  0.000000000000001  Thermotoga sp. RQ2  Bacteria  decreased coverage  0.000118485  n/a   
 
 
-
 
NC_012917  PC1_2958  extracellular solute-binding protein family 1  25.85 
 
 
410 aa  84.7  0.000000000000003  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.347864  n/a   
 
 
-
 
NC_009486  Tpet_0966  extracellular solute-binding protein  24.28 
 
 
392 aa  84.7  0.000000000000003  Thermotoga petrophila RKU-1  Bacteria  unclonable  0.0000000011003  n/a   
 
 
-
 
NC_011831  Cagg_3183  extracellular solute-binding protein family 1  27.42 
 
 
411 aa  84.7  0.000000000000003  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.641192  normal  0.908857 
 
 
-
 
NC_013421  Pecwa_1321  extracellular solute-binding protein family 1  25.85 
 
 
410 aa  83.6  0.000000000000006  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_4267  extracellular solute-binding protein family 1  28.83 
 
 
400 aa  81.6  0.00000000000003  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013743  Htur_2649  extracellular solute-binding protein family 1  28 
 
 
400 aa  80.9  0.00000000000004  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_012912  Dd1591_1276  extracellular solute-binding protein family 1  26.17 
 
 
417 aa  81.3  0.00000000000004  Dickeya zeae Ech1591  Bacteria  decreased coverage  0.000485827  n/a   
 
 
-
 
NC_011891  A2cp1_4289  extracellular solute-binding protein family 1  28.53 
 
 
400 aa  78.6  0.0000000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.53848  n/a   
 
 
-
 
NC_007760  Adeh_4136  ABC sugar transporter, periplasmic ligand binding protein  28.53 
 
 
400 aa  77.8  0.0000000000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2152  extracellular solute-binding protein family 1  26.77 
 
 
415 aa  77.4  0.0000000000005  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.410183  n/a   
 
 
-
 
NC_011661  Dtur_0854  extracellular solute-binding protein family 1  24.66 
 
 
398 aa  75.1  0.000000000002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.124504  n/a   
 
 
-
 
NC_010465  YPK_0968  extracellular solute-binding protein  25.34 
 
 
411 aa  74.7  0.000000000003  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.155665  n/a   
 
 
-
 
NC_010159  YpAngola_A3883  maltose/maltodextrin ABC transporter periplasmic maltose/maltodextrin-binding protein  25.34 
 
 
411 aa  74.3  0.000000000004  Yersinia pestis Angola  Bacteria  normal  normal  0.265603 
 
 
-
 
NC_009708  YpsIP31758_0914  maltose/maltodextrin ABC transporter, periplasmic maltose/maltodextrin-binding protein  25.34 
 
 
411 aa  73.6  0.000000000006  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.459005  n/a   
 
 
-
 
NC_012793  GWCH70_0701  extracellular solute-binding protein family 1  26.28 
 
 
432 aa  73.2  0.000000000009  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_16190  extracellular solute-binding protein family 1  26.79 
 
 
401 aa  72  0.00000000002  Halothermothrix orenii H 168  Bacteria  decreased coverage  0.00305219  n/a   
 
 
-
 
NC_013595  Sros_3339  Maltose-binding periplasmic protein/domains- like protein  27.07 
 
 
431 aa  71.2  0.00000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.202326 
 
 
-
 
NC_013946  Mrub_2535  extracellular solute-binding protein family 1  25.36 
 
 
418 aa  70.5  0.00000000006  Meiothermus ruber DSM 1279  Bacteria  normal  0.105932  normal 
 
 
-
 
NC_013440  Hoch_5852  extracellular solute-binding protein family 1  29.22 
 
 
438 aa  69.7  0.0000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_1170  extracellular solute-binding protein family 1  27.23 
 
 
397 aa  69.3  0.0000000001  Meiothermus silvanus DSM 9946  Bacteria  normal  0.441465  normal  0.43389 
 
 
-
 
NC_009718  Fnod_0781  extracellular solute-binding protein  24.51 
 
 
395 aa  69.3  0.0000000001  Fervidobacterium nodosum Rt17-B1  Bacteria  unclonable  0.000000000729506  n/a   
 
 
-
 
NC_013131  Caci_2418  extracellular solute-binding protein family 1  27.23 
 
 
447 aa  68.9  0.0000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_0348  extracellular solute-binding protein family 1  25.28 
 
 
419 aa  67.4  0.0000000005  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0698  putative sugar ABC transporter, periplasmic sugar-binding protein  25.23 
 
 
366 aa  67  0.0000000007  Brucella ovis ATCC 25840  Bacteria  normal  0.436581  n/a   
 
 
-
 
NC_013739  Cwoe_3983  extracellular solute-binding protein family 1  27.5 
 
 
456 aa  66.2  0.000000001  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_00780  extracellular solute-binding protein family 1  27.34 
 
 
411 aa  65.9  0.000000001  Halothermothrix orenii H 168  Bacteria  normal  0.0480859  n/a   
 
 
-
 
NC_004311  BRA0748  sugar ABC transporter, periplasmic sugar-binding protein, putative  25.23 
 
 
411 aa  65.5  0.000000002  Brucella suis 1330  Bacteria  normal  0.537127  n/a   
 
 
-
 
NC_013131  Caci_2611  extracellular solute-binding protein family 1  26.28 
 
 
453 aa  65.1  0.000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.058641  normal 
 
 
-
 
NC_014212  Mesil_2057  extracellular solute-binding protein family 1  24.28 
 
 
421 aa  65.9  0.000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  0.112802  normal  0.296802 
 
 
-
 
NC_011661  Dtur_0712  extracellular solute-binding protein family 1  23.91 
 
 
397 aa  65.5  0.000000002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.518168  n/a   
 
 
-
 
NC_009616  Tmel_0596  extracellular solute-binding protein  25.07 
 
 
390 aa  65.5  0.000000002  Thermosipho melanesiensis BI429  Bacteria  decreased coverage  0.00439649  n/a   
 
 
-
 
NC_009664  Krad_0385  extracellular solute-binding protein family 1  28.51 
 
 
410 aa  64.7  0.000000003  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0390662 
 
 
-
 
NC_008243  Meso_4520  extracellular solute-binding protein  27.13 
 
 
415 aa  64.3  0.000000004  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3132  maltose ABC transporter periplasmic protein  25.88 
 
 
395 aa  63.9  0.000000005  Pseudomonas mendocina ymp  Bacteria  normal  0.0559599  normal  0.0111617 
 
 
-
 
NC_012029  Hlac_0632  extracellular solute-binding protein family 1  26.44 
 
 
434 aa  63.5  0.000000007  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  0.708501  normal 
 
 
-
 
NC_010320  Teth514_1181  extracellular solute-binding protein  22.91 
 
 
413 aa  63.2  0.000000009  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.0000595288  n/a   
 
 
-
 
NC_010676  Bphyt_7208  extracellular solute-binding protein family 1  25.81 
 
 
410 aa  62.8  0.00000001  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B0420  ABC sugar transporter, periplasmic ligand binding protein  25.67 
 
 
410 aa  62.8  0.00000001  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_11620  ABC-type sugar transport system, periplasmic component  24.67 
 
 
426 aa  62.4  0.00000001  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_2873  extracellular solute-binding protein family 1  24.37 
 
 
425 aa  62.8  0.00000001  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3895  extracellular solute-binding protein  24.85 
 
 
411 aa  62.8  0.00000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_4563  extracellular solute-binding protein  24.78 
 
 
439 aa  62.8  0.00000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_6732  extracellular solute-binding protein family 1  25.44 
 
 
425 aa  62  0.00000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.255639  normal 
 
 
-
 
NC_011831  Cagg_0406  extracellular solute-binding protein family 1  24.11 
 
 
428 aa  62  0.00000002  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00219397  normal 
 
 
-
 
NC_010623  Bphy_4057  extracellular solute-binding protein  25.46 
 
 
410 aa  62  0.00000002  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_06340  maltose-binding periplasmic protein  27.41 
 
 
409 aa  62.4  0.00000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.211092  normal 
 
 
-
 
NC_013946  Mrub_1118  extracellular solute-binding protein family 1  28.17 
 
 
400 aa  61.2  0.00000003  Meiothermus ruber DSM 1279  Bacteria  decreased coverage  0.0000000704817  normal 
 
 
-
 
NC_010625  Bphy_6665  extracellular solute-binding protein  27.19 
 
 
423 aa  61.2  0.00000003  Burkholderia phymatum STM815  Bacteria  normal  0.99524  normal 
 
 
-
 
NC_011988  Avi_6240  ABC transporter substrate binding protein (maltose)  24.81 
 
 
407 aa  60.8  0.00000005  Agrobacterium vitis S4  Bacteria  normal  0.0994607  n/a   
 
 
-
 
NC_009376  Pars_1865  extracellular solute-binding protein  21.82 
 
 
454 aa  60.5  0.00000005  Pyrobaculum arsenaticum DSM 13514  Archaea  normal  normal 
 
 
-
 
NC_012858  Rleg_6631  extracellular solute-binding protein family 1  28.49 
 
 
410 aa  60.5  0.00000006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.325237 
 
 
-
 
NC_011772  BCG9842_B1120  putative maltosaccharide ABC transporter, maltosaccharide-binding protein  23.26 
 
 
419 aa  59.7  0.00000009  Bacillus cereus G9842  Bacteria  hitchhiker  0.0000383609  normal 
 
 
-
 
NC_011894  Mnod_6751  extracellular solute-binding protein family 1  27.61 
 
 
441 aa  59.3  0.0000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2574  extracellular solute-binding protein family 1  21.37 
 
 
401 aa  59.3  0.0000001  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.00000000602333  n/a   
 
 
-
 
NC_009664  Krad_2582  extracellular solute-binding protein family 1  28.63 
 
 
416 aa  59.3  0.0000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_2485  extracellular solute-binding protein  24.19 
 
 
415 aa  59.7  0.0000001  Ochrobactrum anthropi ATCC 49188  Bacteria  decreased coverage  0.00421769  n/a   
 
 
-
 
NC_010001  Cphy_2308  extracellular solute-binding protein  24.01 
 
 
440 aa  59.3  0.0000001  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000000253431  n/a   
 
 
-
 
NC_010320  Teth514_0397  extracellular solute-binding protein  26.61 
 
 
428 aa  59.3  0.0000001  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_2420  extracellular solute-binding protein  27.23 
 
 
443 aa  58.5  0.0000002  Mycobacterium sp. MCS  Bacteria  normal  0.783182  n/a   
 
 
-
 
NC_008705  Mkms_2465  extracellular solute-binding protein  27.23 
 
 
443 aa  58.5  0.0000002  Mycobacterium sp. KMS  Bacteria  normal  0.270585  normal 
 
 
-
 
NC_009077  Mjls_2459  extracellular solute-binding protein  27.23 
 
 
443 aa  58.5  0.0000002  Mycobacterium sp. JLS  Bacteria  normal  0.924766  normal 
 
 
-
 
NC_003909  BCE_4064  maltosaccharide ABC transporter, maltosaccharide-binding protein, putative  23.36 
 
 
419 aa  58.2  0.0000003  Bacillus cereus ATCC 10987  Bacteria  normal  0.0421403  n/a   
 
 
-
 
NC_007511  Bcep18194_B3065  ABC sugar transporter, periplasmic ligand binding protein  25.25 
 
 
421 aa  58.2  0.0000003  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008010  Dgeo_2696  extracellular solute-binding protein  23.21 
 
 
420 aa  58.2  0.0000003  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.240659  n/a   
 
 
-
 
NC_011658  BCAH187_A4138  putative maltosaccharide ABC transporter, maltosaccharide-binding protein  23.36 
 
 
419 aa  58.2  0.0000003  Bacillus cereus AH187  Bacteria  hitchhiker  0.00348898  n/a   
 
 
-
 
NC_010003  Pmob_1262  extracellular solute-binding protein  22.03 
 
 
408 aa  58.2  0.0000003  Petrotoga mobilis SJ95  Bacteria  normal  0.953049  n/a   
 
 
-
 
NC_005945  BAS3922  maltosaccharide ABC transporter maltosaccharide-binding protein  23.36 
 
 
419 aa  57.4  0.0000005  Bacillus anthracis str. Sterne  Bacteria  normal  0.0134813  n/a   
 
 
-
 
NC_006274  BCZK3770  maltosaccharide ABC transporter, maltosaccharide-binding protein  23.36 
 
 
419 aa  57.4  0.0000005  Bacillus cereus E33L  Bacteria  hitchhiker  0.000087749  n/a   
 
 
-
 
NC_007530  GBAA_4229  maltosaccharide ABC transporter maltosaccharide-binding protein  23.36 
 
 
419 aa  57.4  0.0000005  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.749727  n/a   
 
 
-
 
NC_013131  Caci_2108  extracellular solute-binding protein family 1  28.03 
 
 
430 aa  57.4  0.0000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.553068 
 
 
-
 
NC_011773  BCAH820_4032  putative maltosaccharide ABC transporter, maltosaccharide-binding protein  23.36 
 
 
419 aa  57.4  0.0000005  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005957  BT9727_3754  maltose-maltodextrin ABC-related solute binding protein  23.36 
 
 
419 aa  57.4  0.0000006  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00000542287  n/a   
 
 
-
 
NC_010511  M446_6664  extracellular solute-binding protein  28.15 
 
 
452 aa  57  0.0000006  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0689323 
 
 
-
 
NC_013530  Xcel_1138  extracellular solute-binding protein family 1  27.56 
 
 
423 aa  57  0.0000006  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.443513  n/a   
 
 
-
 
NC_008025  Dgeo_1500  extracellular solute-binding protein  25 
 
 
393 aa  57  0.0000007  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_3841  extracellular solute-binding protein  23.33 
 
 
419 aa  57  0.0000007  Bacillus weihenstephanensis KBAB4  Bacteria  decreased coverage  0.000013033  n/a   
 
 
-
 
NC_013131  Caci_4320  extracellular solute-binding protein family 1  28.94 
 
 
425 aa  56.6  0.0000008  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.811375  hitchhiker  0.00841489 
 
 
-
 
NC_007650  BTH_II1179  sugar ABC transporter, periplasmic sugar-binding protein, putative  25.93 
 
 
423 aa  56.6  0.0000009  Burkholderia thailandensis E264  Bacteria  normal  0.0916647  n/a   
 
 
-
 
NC_011725  BCB4264_A4119  putative maltosaccharide ABC transporter, maltosaccharide-binding protein  23.7 
 
 
419 aa  56.6  0.0000009  Bacillus cereus B4264  Bacteria  hitchhiker  0.000674051  n/a   
 
 
-
 
NC_008061  Bcen_5060  extracellular solute-binding protein  26.26 
 
 
421 aa  56.2  0.000001  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.299118  n/a   
 
 
-
 
NC_011366  Rleg2_5687  extracellular solute-binding protein family 1  25.82 
 
 
401 aa  56.2  0.000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.627079  normal 
 
 
-
 
NC_008543  Bcen2424_5800  extracellular solute-binding protein  26.26 
 
 
421 aa  56.2  0.000001  Burkholderia cenocepacia HI2424  Bacteria  normal  0.307701  normal 
 
 
-
 
NC_008784  BMASAVP1_0065  putative sugar ABC transporter, periplasmic sugar-binding protein  25.93 
 
 
426 aa  56.2  0.000001  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0354  putative sugar ABC transporter, periplasmic sugar-binding protein  25.93 
 
 
426 aa  56.2  0.000001  Burkholderia mallei NCTC 10229  Bacteria  normal  0.824168  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1650  putative sugar ABC transporter, periplasmic sugar-binding protein  25.93 
 
 
426 aa  56.2  0.000001  Burkholderia pseudomallei 1106a  Bacteria  normal  0.572617  n/a   
 
 
-
 
NC_009079  BMA10247_A1232  putative sugar ABC transporter, periplasmic sugar-binding protein  25.93 
 
 
426 aa  56.2  0.000001  Burkholderia mallei NCTC 10247  Bacteria  normal  0.715088  n/a   
 
 
-
 
NC_010515  Bcenmc03_4379  extracellular solute-binding protein  25.93 
 
 
421 aa  56.6  0.000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_22450  maltose-binding periplasmic protein  23.05 
 
 
439 aa  56.6  0.000001  Micrococcus luteus NCTC 2665  Bacteria  normal  0.326435  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0230  putative transporter periplasmic binding protein  25.59 
 
 
426 aa  55.1  0.000002  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_3775  extracellular solute-binding protein  26.2 
 
 
441 aa  55.1  0.000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.577316  normal  0.394592 
 
 
-
 
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