More than 300 homologs were found in PanDaTox collection
for query gene RoseRS_3357 on replicon NC_009523
Organism: Roseiflexus sp. RS-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009523  RoseRS_3357  response regulator receiver protein  100 
 
 
283 aa  565  1e-160  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_4150  response regulator receiver protein  83.75 
 
 
291 aa  452  1.0000000000000001e-126  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.0666389 
 
 
-
 
NC_011729  PCC7424_3004  response regulator receiver protein  39.13 
 
 
290 aa  201  8e-51  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011726  PCC8801_3932  response regulator receiver protein  39.01 
 
 
298 aa  188  9e-47  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_3981  response regulator receiver protein  39.01 
 
 
298 aa  188  9e-47  Cyanothece sp. PCC 8802  Bacteria  hitchhiker  0.0000307852  hitchhiker  0.00111731 
 
 
-
 
NC_011831  Cagg_0862  response regulator receiver protein  33.93 
 
 
293 aa  135  6.0000000000000005e-31  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.747276  normal  0.358 
 
 
-
 
NC_011729  PCC7424_0037  response regulator receiver sensor signal transduction histidine kinase  41.24 
 
 
387 aa  124  2e-27  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013161  Cyan8802_1522  response regulator receiver sensor signal transduction histidine kinase  39.23 
 
 
389 aa  119  3.9999999999999996e-26  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_007484  Noc_1700  PAS sensor, signal transduction histidine kinase  44.59 
 
 
553 aa  119  3.9999999999999996e-26  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.012241  n/a   
 
 
-
 
NC_011726  PCC8801_1495  response regulator receiver sensor signal transduction histidine kinase  39.7 
 
 
389 aa  119  6e-26  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011884  Cyan7425_3015  multi-sensor signal transduction histidine kinase  46.32 
 
 
500 aa  117  3e-25  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_0788  PAS/PAC sensor hybrid histidine kinase  47.66 
 
 
634 aa  116  5e-25  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_4343  PAS/PAC sensor hybrid histidine kinase  41.25 
 
 
759 aa  114  2.0000000000000002e-24  Anabaena variabilis ATCC 29413  Bacteria  normal  0.77937  normal 
 
 
-
 
NC_007413  Ava_3854  response regulator receiver Signal transduction histidine kinase  40.53 
 
 
386 aa  113  3e-24  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013922  Nmag_2692  response regulator receiver modulated GAF sensor protein  44.52 
 
 
637 aa  112  5e-24  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_013743  Htur_0128  response regulator receiver modulated GAF sensor protein  48.68 
 
 
728 aa  112  9e-24  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_011884  Cyan7425_3018  PAS/PAC sensor hybrid histidine kinase  46.04 
 
 
653 aa  111  1.0000000000000001e-23  Cyanothece sp. PCC 7425  Bacteria  normal  0.697975  normal 
 
 
-
 
NC_011832  Mpal_1518  PAS/PAC sensor hybrid histidine kinase  43.8 
 
 
769 aa  110  3e-23  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_008312  Tery_4231  response regulator receiver modulated diguanylate cyclase  33.74 
 
 
357 aa  107  2e-22  Trichodesmium erythraeum IMS101  Bacteria  normal  0.113145  normal  0.678212 
 
 
-
 
NC_010622  Bphy_1145  multi-sensor signal transduction histidine kinase  43.07 
 
 
490 aa  107  3e-22  Burkholderia phymatum STM815  Bacteria  normal  0.894172  normal 
 
 
-
 
NC_011769  DvMF_2541  multi-sensor signal transduction histidine kinase  44.44 
 
 
874 aa  107  3e-22  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008835  BMA10229_0176  sensory box histidine kinase/response regulator  43.17 
 
 
492 aa  104  2e-21  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_0472  sensory box histidine kinase/response regulator  43.17 
 
 
492 aa  104  2e-21  Burkholderia mallei SAVP1  Bacteria  normal  0.798891  n/a   
 
 
-
 
NC_007355  Mbar_A3247  sensory transduction histidine kinase  40.94 
 
 
746 aa  104  2e-21  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal  0.0645212 
 
 
-
 
NC_009075  BURPS668_A1932  Signal transduction histidine kinase  43.17 
 
 
492 aa  104  2e-21  Burkholderia pseudomallei 668  Bacteria  normal  0.0476253  n/a   
 
 
-
 
NC_009079  BMA10247_A1432  sensory box histidine kinase/response regulator  43.17 
 
 
492 aa  104  2e-21  Burkholderia mallei NCTC 10247  Bacteria  normal  0.188442  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1842  response regulator/sensory box histidine kinase  43.17 
 
 
492 aa  104  2e-21  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2816  multi-sensor hybrid histidine kinase  46.03 
 
 
682 aa  103  3e-21  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.0864703 
 
 
-
 
NC_007643  Rru_A3293  NarL family two-component response regulator  32.31 
 
 
275 aa  102  6e-21  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_4358  hypothetical protein  29.24 
 
 
279 aa  101  1e-20  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.798369  normal 
 
 
-
 
NC_013743  Htur_0709  response regulator receiver modulated GAF sensor protein  42.42 
 
 
564 aa  99.4  6e-20  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_011729  PCC7424_5111  response regulator receiver modulated diguanylate cyclase  36.17 
 
 
479 aa  99.4  7e-20  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013440  Hoch_4645  PAS/PAC sensor hybrid histidine kinase  45.6 
 
 
644 aa  98.2  1e-19  Haliangium ochraceum DSM 14365  Bacteria  normal  0.224961  normal 
 
 
-
 
NC_007650  BTH_II1009  sensory box histidine kinase/response regulator  46.36 
 
 
463 aa  96.3  6e-19  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_013158  Huta_1870  response regulator receiver sensor signal transduction histidine kinase  42.94 
 
 
346 aa  95.1  1e-18  Halorhabdus utahensis DSM 12940  Archaea  normal  0.181656  n/a   
 
 
-
 
NC_013521  Sked_22970  serine phosphatase RsbU, regulator of sigma subunit  45.51 
 
 
423 aa  94  3e-18  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.376006 
 
 
-
 
NC_007643  Rru_A1653  guanylate cyclase  43.7 
 
 
433 aa  92.8  5e-18  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.181095  n/a   
 
 
-
 
NC_008726  Mvan_2987  response regulator receiver protein  45.97 
 
 
391 aa  92.4  7e-18  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.143541  normal  0.900637 
 
 
-
 
NC_006349  BMAA0910  sensory box histidine kinase/response regulator  44.55 
 
 
463 aa  92.4  8e-18  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0380  sensory box histidine kinase/response regulator  44.55 
 
 
463 aa  92.4  8e-18  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_3484  response regulator receiver modulated serine phosphatase  42.52 
 
 
395 aa  90.9  2e-17  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013922  Nmag_2043  response regulator receiver protein  36.79 
 
 
433 aa  91.3  2e-17  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_007333  Tfu_2344  response regulator receiver:protein phosphatase 2C-like  45.1 
 
 
409 aa  89.7  5e-17  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_2688  response regulator receiver modulated serine phosphatase  42.74 
 
 
407 aa  89.7  5e-17  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_2718  response regulator receiver protein  42.74 
 
 
407 aa  89.7  5e-17  Mycobacterium sp. JLS  Bacteria  normal  0.453118  normal  0.333299 
 
 
-
 
NC_008705  Mkms_2732  response regulator receiver protein  42.74 
 
 
407 aa  89.7  5e-17  Mycobacterium sp. KMS  Bacteria  normal  0.276002  normal  0.519614 
 
 
-
 
NC_009338  Mflv_3268  response regulator receiver protein  45.16 
 
 
391 aa  89.4  6e-17  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_0056  response regulator receiver modulated serine phosphatase  41.84 
 
 
418 aa  87.8  2e-16  Acidothermus cellulolyticus 11B  Bacteria  normal  0.287626  normal 
 
 
-
 
NC_007298  Daro_2048  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  40.16 
 
 
827 aa  87.4  3e-16  Dechloromonas aromatica RCB  Bacteria  normal  0.589876  normal 
 
 
-
 
NC_013510  Tcur_1126  response regulator receiver modulated serine phosphatase  44.19 
 
 
451 aa  85.5  9e-16  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3213  two-component hybrid sensor and regulator  31.45 
 
 
359 aa  84  0.000000000000002  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_5033  response regulator receiver modulated serine phosphatase  42.57 
 
 
389 aa  83.6  0.000000000000004  Actinosynnema mirum DSM 43827  Bacteria  normal  0.185229  n/a   
 
 
-
 
NC_009921  Franean1_6523  response regulator receiver modulated serine phosphatase  45.9 
 
 
422 aa  83.2  0.000000000000004  Frankia sp. EAN1pec  Bacteria  normal  0.98735  normal  0.0636909 
 
 
-
 
NC_013530  Xcel_1263  response regulator receiver modulated serine phosphatase  47.29 
 
 
425 aa  83.2  0.000000000000005  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.799731  n/a   
 
 
-
 
NC_013739  Cwoe_5361  response regulator receiver modulated serine phosphatase  44.3 
 
 
392 aa  82.8  0.000000000000006  Conexibacter woesei DSM 14684  Bacteria  normal  0.155785  normal 
 
 
-
 
NC_011831  Cagg_0620  putative PAS/PAC sensor protein  39.25 
 
 
390 aa  82  0.00000000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_0442  response regulator receiver modulated serine phosphatase  47.83 
 
 
421 aa  80.5  0.00000000000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.723738  normal  0.440975 
 
 
-
 
NC_011729  PCC7424_2350  putative PAS/PAC sensor protein  33.78 
 
 
450 aa  79.7  0.00000000000005  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011138  MADE_01273  putative two-component sensor histidine kinase and response regulator hybrid  31.11 
 
 
702 aa  77.4  0.0000000000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0064  Signal transduction histidine kinase  36 
 
 
1714 aa  76.3  0.0000000000006  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.274411 
 
 
-
 
NC_008148  Rxyl_2510  multi-sensor signal transduction histidine kinase  40.91 
 
 
640 aa  75.9  0.0000000000007  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0264  Signal transduction histidine kinase-like  32.54 
 
 
666 aa  73.6  0.000000000004  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0170548 
 
 
-
 
NC_011729  PCC7424_1421  response regulator receiver sensor signal transduction histidine kinase  28.51 
 
 
404 aa  73.2  0.000000000004  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011884  Cyan7425_3613  multi-sensor hybrid histidine kinase  33.74 
 
 
1808 aa  73.2  0.000000000005  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.643019 
 
 
-
 
NC_013743  Htur_0348  response regulator receiver modulated GAF sensor protein  35.14 
 
 
700 aa  72.8  0.000000000006  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_008009  Acid345_1814  response regulator receiver sensor signal transduction histidine kinase  32.42 
 
 
381 aa  72.8  0.000000000006  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_1576  response regulator receiver modulated serine phosphatase  49.61 
 
 
406 aa  72.4  0.000000000007  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.0296276 
 
 
-
 
NC_013037  Dfer_3325  PAS/PAC sensor hybrid histidine kinase  32.43 
 
 
667 aa  72.4  0.000000000009  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_1869  response regulator receiver sensor signal transduction histidine kinase  34.09 
 
 
553 aa  72  0.00000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_2408  PAS/PAC sensor hybrid histidine kinase  35.71 
 
 
647 aa  70.9  0.00000000002  Rhodothermus marinus DSM 4252  Bacteria  normal  0.385618  n/a   
 
 
-
 
NC_011146  Gbem_1952  PAS/PAC sensor hybrid histidine kinase  36.15 
 
 
692 aa  70.9  0.00000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009051  Memar_1906  multi-sensor signal transduction histidine kinase  33.56 
 
 
659 aa  70.1  0.00000000004  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_0366  signal transduction histidine kinase, nitrogen specific, NtrB  34.51 
 
 
1081 aa  69.7  0.00000000005  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3764  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.09 
 
 
577 aa  69.3  0.00000000006  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_3820  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.09 
 
 
577 aa  69.3  0.00000000006  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2331  response regulator receiver protein  31.69 
 
 
142 aa  69.7  0.00000000006  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.00000000425244  n/a   
 
 
-
 
NC_009997  Sbal195_3946  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.09 
 
 
577 aa  69.3  0.00000000006  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0504  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.09 
 
 
577 aa  69.3  0.00000000007  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_0290  response regulator receiver modulated serine phosphatase  43.05 
 
 
390 aa  69.3  0.00000000007  Frankia sp. CcI3  Bacteria  normal  0.639758  normal  0.494925 
 
 
-
 
NC_013440  Hoch_1901  adenylate/guanylate cyclase  33.85 
 
 
381 aa  69.3  0.00000000007  Haliangium ochraceum DSM 14365  Bacteria  normal  0.500403  normal 
 
 
-
 
NC_007796  Mhun_2967  putative PAS/PAC sensor protein  31.16 
 
 
376 aa  69.3  0.00000000007  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_009712  Mboo_0402  multi-sensor signal transduction histidine kinase  33.09 
 
 
766 aa  68.9  0.00000000009  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.371468  normal 
 
 
-
 
NC_008577  Shewana3_0544  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  32.35 
 
 
572 aa  68.9  0.00000000009  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_0545  response regulator  32.5 
 
 
575 aa  68.6  0.0000000001  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_1005  multi-sensor Signal transduction histidine kinase  35.66 
 
 
646 aa  68.6  0.0000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.442988  decreased coverage  0.0000217029 
 
 
-
 
NC_007413  Ava_1561  response regulator receiver Signal transduction histidine kinase  35.17 
 
 
443 aa  68.6  0.0000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.414952 
 
 
-
 
NC_011880  Cyan7425_5298  signal transduction histidine kinase  32.16 
 
 
732 aa  68.6  0.0000000001  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2264  multi-sensor hybrid histidine kinase  34.25 
 
 
692 aa  68.9  0.0000000001  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009438  Sputcn32_3328  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  32.35 
 
 
573 aa  67.8  0.0000000002  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_2107  multi-sensor signal transduction histidine kinase  33.11 
 
 
660 aa  67.4  0.0000000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_013173  Dbac_3323  two component, sigma54 specific, transcriptional regulator, Fis family  29.37 
 
 
458 aa  67.4  0.0000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.581416  n/a   
 
 
-
 
NC_009831  Ssed_3875  two component transcriptional regulator  35.96 
 
 
224 aa  68.2  0.0000000002  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000754116  normal 
 
 
-
 
NC_009712  Mboo_2110  multi-sensor signal transduction histidine kinase  32.72 
 
 
789 aa  67.8  0.0000000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.377648  normal 
 
 
-
 
NC_013440  Hoch_5362  multi-sensor signal transduction histidine kinase  38.98 
 
 
643 aa  67.4  0.0000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_3770  response regulator receiver protein  38.46 
 
 
391 aa  67.4  0.0000000003  Roseiflexus sp. RS-1  Bacteria  normal  unclonable  0.0000112062 
 
 
-
 
NC_007908  Rfer_1928  two component LuxR family transcriptional regulator  33.07 
 
 
487 aa  67.4  0.0000000003  Rhodoferax ferrireducens T118  Bacteria  normal  0.793322  n/a   
 
 
-
 
NC_007912  Sde_0664  response regulator receiver modulated diguanylate cyclase  37.01 
 
 
307 aa  67  0.0000000003  Saccharophagus degradans 2-40  Bacteria  normal  hitchhiker  0.00416303 
 
 
-
 
NC_009997  Sbal195_3875  two component transcriptional regulator  35.09 
 
 
224 aa  67.4  0.0000000003  Shewanella baltica OS195  Bacteria  decreased coverage  0.000900168  normal 
 
 
-
 
NC_013037  Dfer_2748  signal transduction histidine kinase, nitrogen specific, NtrB  32.59 
 
 
476 aa  67  0.0000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.662437  normal  0.393877 
 
 
-
 
NC_009438  Sputcn32_0650  two component transcriptional regulator  34.21 
 
 
224 aa  66.6  0.0000000004  Shewanella putrefaciens CN-32  Bacteria  decreased coverage  0.00000000493918  n/a   
 
 
-
 
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