More than 300 homologs were found in PanDaTox collection
for query gene RoseRS_3355 on replicon NC_009523
Organism: Roseiflexus sp. RS-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009523  RoseRS_3355  two component Fis family transcriptional regulator  100 
 
 
122 aa  244  3e-64  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_4152  response regulator receiver protein  89.26 
 
 
122 aa  219  7e-57  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.237344 
 
 
-
 
NC_009972  Haur_0587  response regulator receiver protein  58.97 
 
 
121 aa  155  2e-37  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00000905435  n/a   
 
 
-
 
NC_011831  Cagg_2881  response regulator receiver protein  58.33 
 
 
123 aa  149  2e-35  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000073998  normal  0.0206952 
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  39.83 
 
 
367 aa  85.5  2e-16  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  41.44 
 
 
454 aa  84.3  5e-16  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2637  two component transcriptional regulator, winged helix family  37.19 
 
 
227 aa  84  7e-16  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_3742  two component transcriptional regulator, winged helix family  38.33 
 
 
263 aa  84  7e-16  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_0228  two component transcriptional regulator, winged helix family  41.18 
 
 
223 aa  82.4  0.000000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.325348 
 
 
-
 
NC_013525  Tter_1098  two component transcriptional regulator, winged helix family  39.67 
 
 
228 aa  82.4  0.000000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013132  Cpin_2852  histidine kinase  33.88 
 
 
1342 aa  82.8  0.000000000000002  Chitinophaga pinensis DSM 2588  Bacteria  decreased coverage  0.0012841  normal 
 
 
-
 
NC_011729  PCC7424_3637  two component transcriptional regulator, winged helix family  37.82 
 
 
246 aa  82.4  0.000000000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_014248  Aazo_5207  winged helix family two component transcriptional regulator  36.13 
 
 
247 aa  81.6  0.000000000000004  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1103  two component transcriptional regulator, winged helix family  36.36 
 
 
227 aa  80.9  0.000000000000005  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3604  putative PAS/PAC sensor protein  33.88 
 
 
619 aa  81.3  0.000000000000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.562878 
 
 
-
 
NC_007413  Ava_4702  response regulator receiver Signal transduction histidine kinase  38.98 
 
 
381 aa  80.5  0.000000000000007  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0901362  normal 
 
 
-
 
NC_013422  Hneap_0135  integral membrane sensor hybrid histidine kinase  39.5 
 
 
858 aa  79.7  0.00000000000001  Halothiobacillus neapolitanus c2  Bacteria  normal  0.711395  n/a   
 
 
-
 
NC_011884  Cyan7425_3552  Cache sensor hybrid histidine kinase  39.29 
 
 
970 aa  79.3  0.00000000000001  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_1963  two component transcriptional regulator, winged helix family  36.13 
 
 
246 aa  79  0.00000000000002  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.470012 
 
 
-
 
NC_007413  Ava_1498  two component transcriptional regulator  35.29 
 
 
247 aa  79.3  0.00000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.220919  normal 
 
 
-
 
NC_011726  PCC8801_1936  two component transcriptional regulator, winged helix family  36.13 
 
 
246 aa  79  0.00000000000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007644  Moth_2406  response regulator receiver domain-containing protein  37.39 
 
 
124 aa  79  0.00000000000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_4937  two component transcriptional regulator  36.13 
 
 
257 aa  79  0.00000000000002  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.565868 
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  38.98 
 
 
488 aa  78.6  0.00000000000003  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.182398 
 
 
-
 
NC_008228  Patl_1836  two component AraC family transcriptional regulator  35.59 
 
 
1341 aa  78.6  0.00000000000003  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3134  response regulator receiver protein  36.29 
 
 
200 aa  78.2  0.00000000000004  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  39.67 
 
 
566 aa  78.2  0.00000000000004  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_011884  Cyan7425_1392  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  35.9 
 
 
584 aa  77.8  0.00000000000005  Cyanothece sp. PCC 7425  Bacteria  normal  0.623748  normal 
 
 
-
 
NC_008148  Rxyl_3017  two component transcriptional regulator  34.19 
 
 
225 aa  77.8  0.00000000000005  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0922  response regulator receiver protein  33.91 
 
 
459 aa  77.4  0.00000000000005  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2239  adenylate/guanylate cyclase  32.48 
 
 
1156 aa  77.4  0.00000000000006  Anabaena variabilis ATCC 29413  Bacteria  normal  0.159061  normal 
 
 
-
 
NC_013739  Cwoe_1564  two component transcriptional regulator, winged helix family  40.19 
 
 
223 aa  77  0.00000000000007  Conexibacter woesei DSM 14684  Bacteria  normal  0.194978  normal  0.692086 
 
 
-
 
NC_011729  PCC7424_2841  response regulator receiver modulated GAF sensor protein  40.48 
 
 
308 aa  77  0.00000000000008  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.585847 
 
 
-
 
NC_013422  Hneap_1587  two component transcriptional regulator, LuxR family  36.36 
 
 
292 aa  77  0.00000000000008  Halothiobacillus neapolitanus c2  Bacteria  normal  0.522901  n/a   
 
 
-
 
NC_011884  Cyan7425_4410  response regulator receiver protein  32.48 
 
 
131 aa  77  0.00000000000008  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.686937 
 
 
-
 
NC_013757  Gobs_4657  two component transcriptional regulator, winged helix family  32.48 
 
 
240 aa  77  0.00000000000008  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_13797  two component transcriptional regulatory protein  33.91 
 
 
286 aa  77  0.00000000000008  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.173423 
 
 
-
 
NC_011145  AnaeK_0918  response regulator receiver protein  33.91 
 
 
458 aa  77  0.00000000000008  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_0257  response regulator receiver  30.83 
 
 
241 aa  76.6  0.0000000000001  Thermobifida fusca YX  Bacteria  normal  0.926332  n/a   
 
 
-
 
NC_011666  Msil_1887  adenylate/guanylate cyclase  33.61 
 
 
403 aa  76.3  0.0000000000001  Methylocella silvestris BL2  Bacteria  n/a    normal  0.522729 
 
 
-
 
NC_011884  Cyan7425_4555  response regulator receiver sensor signal transduction histidine kinase  35.65 
 
 
406 aa  76.3  0.0000000000001  Cyanothece sp. PCC 7425  Bacteria  normal  0.330139  normal  0.677797 
 
 
-
 
NC_013172  Bfae_07910  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  33.61 
 
 
239 aa  76.6  0.0000000000001  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2692  two component transcriptional regulator, winged helix family  32.76 
 
 
229 aa  76.6  0.0000000000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_20780  putative two-component response regulator  38.89 
 
 
571 aa  76.3  0.0000000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.283191  normal 
 
 
-
 
NC_010571  Oter_3794  response regulator receiver sensor signal transduction histidine kinase  37.82 
 
 
376 aa  75.5  0.0000000000002  Opitutus terrae PB90-1  Bacteria  normal  0.0277983  normal  0.543799 
 
 
-
 
NC_007298  Daro_1632  response regulator receiver  33.33 
 
 
123 aa  75.9  0.0000000000002  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007484  Noc_0130  response regulator receiver  32.77 
 
 
121 aa  75.5  0.0000000000002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_1784  putative two-component response regulator  38.89 
 
 
571 aa  75.9  0.0000000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I2575  chitin degradation sensor protein  35.59 
 
 
1127 aa  75.9  0.0000000000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_0930  response regulator receiver protein  38.74 
 
 
456 aa  75.9  0.0000000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.139996  normal  0.100238 
 
 
-
 
NC_009767  Rcas_3221  response regulator receiver modulated diguanylate cyclase  35.9 
 
 
443 aa  75.5  0.0000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.0497788 
 
 
-
 
NC_011146  Gbem_1708  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  35.04 
 
 
869 aa  75.1  0.0000000000003  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_1887  two component transcriptional regulator  35.9 
 
 
231 aa  75.5  0.0000000000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.882564  normal  0.344123 
 
 
-
 
NC_012918  GM21_2194  response regulator receiver sensor signal transduction histidine kinase  35.34 
 
 
452 aa  75.5  0.0000000000003  Geobacter sp. M21  Bacteria  n/a    normal  0.514859 
 
 
-
 
NC_013037  Dfer_0812  histidine kinase  33.87 
 
 
1335 aa  75.1  0.0000000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.127825  normal 
 
 
-
 
NC_013172  Bfae_20650  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  37.17 
 
 
231 aa  75.5  0.0000000000003  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0260682  n/a   
 
 
-
 
NC_008726  Mvan_4844  two component transcriptional regulator  35.9 
 
 
231 aa  75.5  0.0000000000003  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.312171 
 
 
-
 
NC_009767  Rcas_3177  adenylate/guanylate cyclase with GAF and PAS/PAC sensors  34.96 
 
 
971 aa  75.1  0.0000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_2649  response regulator receiver protein  34.43 
 
 
122 aa  74.7  0.0000000000004  Thauera sp. MZ1T  Bacteria  normal  0.857048  n/a   
 
 
-
 
NC_009972  Haur_2725  two component transcriptional regulator  33.06 
 
 
226 aa  74.7  0.0000000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0716975  n/a   
 
 
-
 
NC_014248  Aazo_0932  response regulator receiver sensor signal transduction histidine kinase  31.67 
 
 
374 aa  74.7  0.0000000000004  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_2338  GAF sensor-containing adenylate/guanylate cyclase  32.48 
 
 
1180 aa  74.7  0.0000000000004  'Nostoc azollae' 0708  Bacteria  normal  0.0263037  n/a   
 
 
-
 
NC_007604  Synpcc7942_0095  two component transcriptional regulator  34.17 
 
 
249 aa  74.3  0.0000000000005  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0899  response regulator receiver domain-containing protein  36.21 
 
 
122 aa  74.3  0.0000000000005  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2998  response regulator receiver protein  34.43 
 
 
377 aa  74.3  0.0000000000005  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008010  Dgeo_2844  two component transcriptional regulator  33.9 
 
 
248 aa  74.3  0.0000000000005  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3036  two component transcriptional regulator, winged helix family  32.48 
 
 
273 aa  74.3  0.0000000000006  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.106658  normal 
 
 
-
 
NC_013946  Mrub_0031  two component transcriptional regulator, winged helix family  31.71 
 
 
234 aa  73.9  0.0000000000007  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_1235  multi-sensor hybrid histidine kinase  31.62 
 
 
989 aa  73.9  0.0000000000007  Burkholderia ambifaria MC40-6  Bacteria  normal  0.172784  normal 
 
 
-
 
NC_014158  Tpau_3631  two component transcriptional regulator, winged helix family  33.87 
 
 
235 aa  73.9  0.0000000000007  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_3553  transcriptional regulator, Crp/Fnr family  36.44 
 
 
348 aa  73.9  0.0000000000007  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.528491 
 
 
-
 
NC_009523  RoseRS_2694  putative PAS/PAC sensor protein  33.33 
 
 
969 aa  73.9  0.0000000000007  Roseiflexus sp. RS-1  Bacteria  normal  0.0176534  normal 
 
 
-
 
NC_007413  Ava_2149  response regulator receiver Signal transduction histidine kinase  37.61 
 
 
407 aa  73.6  0.0000000000008  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.142048 
 
 
-
 
NC_008009  Acid345_2411  PAS/PAC sensor hybrid histidine kinase  34.15 
 
 
497 aa  73.6  0.0000000000008  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2347  response regulator receiver protein  37.82 
 
 
202 aa  73.6  0.0000000000009  Roseiflexus sp. RS-1  Bacteria  normal  0.56815  normal 
 
 
-
 
NC_013440  Hoch_2281  response regulator receiver protein  38.18 
 
 
128 aa  73.6  0.0000000000009  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.498531 
 
 
-
 
NC_009523  RoseRS_3924  response regulator receiver modulated diguanylate cyclase  34.19 
 
 
443 aa  73.6  0.0000000000009  Roseiflexus sp. RS-1  Bacteria  normal  0.350169  normal 
 
 
-
 
NC_009080  BMA10247_3115  chemotaxis response regulator  40 
 
 
126 aa  72.8  0.000000000001  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2860  chemotaxis response regulator  40 
 
 
126 aa  72.8  0.000000000001  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_013162  Coch_1470  histidine kinase  32.52 
 
 
1376 aa  73.6  0.000000000001  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.0500626  n/a   
 
 
-
 
NC_007434  BURPS1710b_0078  chemotaxis two-component response regulator CheY1  40 
 
 
126 aa  72.8  0.000000000001  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007516  Syncc9605_2378  two component transcriptional regulator  31.67 
 
 
262 aa  73.2  0.000000000001  Synechococcus sp. CC9605  Bacteria  normal  normal  0.936352 
 
 
-
 
NC_008836  BMA10229_A1683  chemotaxis response regulator  40 
 
 
126 aa  72.8  0.000000000001  Burkholderia mallei NCTC 10229  Bacteria  normal  0.058459  n/a   
 
 
-
 
NC_007760  Adeh_0873  response regulator receiver domain-containing protein  33.63 
 
 
483 aa  73.2  0.000000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.0633299  n/a   
 
 
-
 
NC_009253  Dred_0759  two component transcriptional regulator  37.93 
 
 
223 aa  73.2  0.000000000001  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00128917  n/a   
 
 
-
 
NC_007973  Rmet_0669  response regulator receiver domain-containing protein  34.71 
 
 
167 aa  73.2  0.000000000001  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00304574  normal  0.832292 
 
 
-
 
NC_009074  BURPS668_3856  chemotaxis protein CheY  40 
 
 
126 aa  72.8  0.000000000001  Burkholderia pseudomallei 668  Bacteria  normal  0.119201  n/a   
 
 
-
 
NC_009076  BURPS1106A_3937  chemotaxis protein CheY  40 
 
 
126 aa  72.8  0.000000000001  Burkholderia pseudomallei 1106a  Bacteria  normal  0.450944  n/a   
 
 
-
 
NC_011729  PCC7424_3993  response regulator receiver protein  34.75 
 
 
124 aa  72.8  0.000000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0199898 
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  36.75 
 
 
397 aa  73.2  0.000000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.543575 
 
 
-
 
NC_008578  Acel_1595  two component transcriptional regulator  35.04 
 
 
227 aa  73.2  0.000000000001  Acidothermus cellulolyticus 11B  Bacteria  normal  0.526383  normal  0.570373 
 
 
-
 
NC_009439  Pmen_2819  response regulator receiver protein  37.27 
 
 
562 aa  72.8  0.000000000001  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0360472 
 
 
-
 
NC_008687  Pden_3311  response regulator receiver protein  33.33 
 
 
321 aa  73.2  0.000000000001  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.479786 
 
 
-
 
NC_008785  BMASAVP1_A3436  chemotaxis response regulator  40 
 
 
126 aa  72.8  0.000000000001  Burkholderia mallei SAVP1  Bacteria  normal  0.487873  n/a   
 
 
-
 
NC_009718  Fnod_0785  two component transcriptional regulator  35.25 
 
 
229 aa  72  0.000000000002  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  0.0635827  n/a   
 
 
-
 
NC_007513  Syncc9902_0314  two component transcriptional regulator  32.5 
 
 
259 aa  72  0.000000000002  Synechococcus sp. CC9902  Bacteria  normal  0.645458  n/a   
 
 
-
 
NC_010814  Glov_1118  response regulator receiver sensor signal transduction histidine kinase  35.25 
 
 
452 aa  72  0.000000000002  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000972917  n/a   
 
 
-
 
NC_007777  Francci3_0308  two component transcriptional regulator  32.8 
 
 
239 aa  72  0.000000000002  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_008820  P9303_27181  two-component response regulator  35.65 
 
 
233 aa  72.4  0.000000000002  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_010524  Lcho_1535  response regulator receiver protein  38.75 
 
 
121 aa  72.8  0.000000000002  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0267991 
 
 
-
 
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