More than 300 homologs were found in PanDaTox collection
for query gene Rmet_5847 on replicon NC_007974
Organism: Cupriavidus metallidurans CH34



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007974  Rmet_5847  short-chain dehydrogenase/reductase SDR  100 
 
 
281 aa  568  1e-161  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5157  Short-chain dehydrogenase/reductase SDR  63.77 
 
 
271 aa  349  3e-95  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3066  short-chain dehydrogenase/reductase SDR  59.02 
 
 
273 aa  319  3.9999999999999996e-86  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.172953  normal 
 
 
-
 
NC_011894  Mnod_2884  short-chain dehydrogenase/reductase SDR  54.51 
 
 
273 aa  279  5e-74  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2412  short-chain dehydrogenase/reductase SDR  58.94 
 
 
269 aa  270  2e-71  Roseiflexus sp. RS-1  Bacteria  hitchhiker  0.00185291  normal 
 
 
-
 
NC_011757  Mchl_4548  short-chain dehydrogenase/reductase SDR  53.76 
 
 
274 aa  264  1e-69  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.239905  normal  0.858139 
 
 
-
 
NC_010725  Mpop_4692  short-chain dehydrogenase/reductase SDR  53.38 
 
 
274 aa  263  3e-69  Methylobacterium populi BJ001  Bacteria  normal  0.169711  normal  0.0760952 
 
 
-
 
NC_010172  Mext_4179  short-chain dehydrogenase/reductase SDR  53.76 
 
 
274 aa  261  6.999999999999999e-69  Methylobacterium extorquens PA1  Bacteria  normal  0.719073  normal 
 
 
-
 
NC_009485  BBta_6766  putative short-chain dehydrogenase  49.06 
 
 
279 aa  259  4e-68  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.353478  normal 
 
 
-
 
NC_009719  Plav_0391  short-chain dehydrogenase/reductase SDR  48.29 
 
 
279 aa  256  4e-67  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.319463  normal 
 
 
-
 
NC_009484  Acry_1087  short-chain dehydrogenase/reductase SDR  48.7 
 
 
286 aa  250  1e-65  Acidiphilium cryptum JF-5  Bacteria  normal  0.252629  n/a   
 
 
-
 
NC_009439  Pmen_1266  short-chain dehydrogenase/reductase SDR  50.76 
 
 
278 aa  248  8e-65  Pseudomonas mendocina ymp  Bacteria  normal  0.343225  normal 
 
 
-
 
NC_009439  Pmen_2621  short-chain dehydrogenase/reductase SDR  46.52 
 
 
295 aa  244  9.999999999999999e-64  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.786359 
 
 
-
 
NC_008699  Noca_3699  short-chain dehydrogenase/reductase SDR  52.99 
 
 
280 aa  242  3.9999999999999997e-63  Nocardioides sp. JS614  Bacteria  normal  0.0817481  n/a   
 
 
-
 
NC_010511  M446_3686  short-chain dehydrogenase/reductase SDR  52.47 
 
 
273 aa  242  6e-63  Methylobacterium sp. 4-46  Bacteria  normal  hitchhiker  0.00031135 
 
 
-
 
NC_009656  PSPA7_3796  putative short-chain dehydrogenase  45.79 
 
 
295 aa  241  1e-62  Pseudomonas aeruginosa PA7  Bacteria  normal  0.205058  n/a   
 
 
-
 
NC_013131  Caci_5627  short-chain dehydrogenase/reductase SDR  49.63 
 
 
282 aa  241  1e-62  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.193827 
 
 
-
 
NC_008463  PA14_44570  putative short-chain dehydrogenase  46.15 
 
 
295 aa  239  2.9999999999999997e-62  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.30545 
 
 
-
 
NC_008740  Maqu_0158  short-chain dehydrogenase/reductase SDR  50.19 
 
 
271 aa  237  2e-61  Marinobacter aquaeolei VT8  Bacteria  normal  0.722445  n/a   
 
 
-
 
NC_010505  Mrad2831_5451  short-chain dehydrogenase/reductase SDR  48.18 
 
 
281 aa  233  4.0000000000000004e-60  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.255746 
 
 
-
 
NC_009078  BURPS1106A_A2673  short chain dehydrogenase/reductase family oxidoreductase  48.48 
 
 
302 aa  232  5e-60  Burkholderia pseudomallei 1106a  Bacteria  normal  0.181377  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1074  short chain dehydrogenase/reductase family oxidoreductase  48.48 
 
 
302 aa  232  5e-60  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2820  dehydrogenases with different specificities  48.48 
 
 
302 aa  232  5e-60  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1539  short chain dehydrogenase/reductase family oxidoreductase  48.48 
 
 
302 aa  232  5e-60  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0120  short chain dehydrogenase/reductase family oxidoreductase  48.48 
 
 
302 aa  232  5e-60  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0101  short chain dehydrogenase/reductase family oxidoreductase  48.48 
 
 
302 aa  232  6e-60  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1262  short chain dehydrogenase/reductase family oxidoreductase  48.48 
 
 
302 aa  232  6e-60  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_0304  short-chain dehydrogenase/reductase SDR  45.96 
 
 
309 aa  231  1e-59  Psychrobacter sp. PRwf-1  Bacteria  normal  0.074209  normal  0.817715 
 
 
-
 
NC_007650  BTH_II0404  short chain dehydrogenase/reductase family oxidoreductase  47.73 
 
 
302 aa  229  5e-59  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_3856  short-chain dehydrogenase/reductase SDR  48.36 
 
 
300 aa  227  2e-58  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.514987 
 
 
-
 
NC_008061  Bcen_4697  short-chain dehydrogenase/reductase SDR  48 
 
 
300 aa  225  7e-58  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.858083  n/a   
 
 
-
 
NC_008543  Bcen2424_3665  short-chain dehydrogenase/reductase SDR  48 
 
 
300 aa  225  7e-58  Burkholderia cenocepacia HI2424  Bacteria  normal  0.196954  normal 
 
 
-
 
NC_010682  Rpic_3360  short-chain dehydrogenase/reductase SDR  43.8 
 
 
296 aa  224  1e-57  Ralstonia pickettii 12J  Bacteria  normal  0.0880635  normal 
 
 
-
 
NC_010086  Bmul_5043  short-chain dehydrogenase/reductase SDR  47.96 
 
 
300 aa  224  2e-57  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.680577 
 
 
-
 
NC_012856  Rpic12D_3013  short-chain dehydrogenase/reductase SDR  43.8 
 
 
296 aa  224  2e-57  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II1472  short chain dehydrogenase  45.02 
 
 
315 aa  223  3e-57  Burkholderia thailandensis E264  Bacteria  normal  0.730562  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1269  short chain dehydrogenase/reductase family oxidoreductase  44.65 
 
 
308 aa  222  6e-57  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2524  short chain dehydrogenase  44.65 
 
 
308 aa  222  6e-57  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A1008  short chain dehydrogenase  44.65 
 
 
308 aa  222  6e-57  Burkholderia mallei NCTC 10247  Bacteria  normal  0.388516  n/a   
 
 
-
 
NC_009075  BURPS668_A1346  short chain dehydrogenase/reductase family oxidoreductase  44.65 
 
 
308 aa  222  6e-57  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0559  short-chain dehydrogenase/reductase SDR  44.65 
 
 
308 aa  222  6e-57  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0827865  n/a   
 
 
-
 
NC_007511  Bcep18194_B2443  Short-chain dehydrogenase/reductase SDR  47.64 
 
 
300 aa  221  7e-57  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5625  short-chain dehydrogenase/reductase SDR  44.74 
 
 
309 aa  221  8e-57  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.285502  normal 
 
 
-
 
NC_008543  Bcen2424_4675  short-chain dehydrogenase/reductase SDR  44.74 
 
 
309 aa  221  8e-57  Burkholderia cenocepacia HI2424  Bacteria  normal  0.396312  normal  0.215379 
 
 
-
 
NC_007973  Rmet_3599  short-chain dehydrogenase/reductase SDR  45.19 
 
 
296 aa  221  9.999999999999999e-57  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008347  Mmar10_1139  short-chain dehydrogenase/reductase SDR  48.72 
 
 
277 aa  221  9.999999999999999e-57  Maricaulis maris MCS10  Bacteria  normal  0.248176  normal  0.05597 
 
 
-
 
NC_010552  BamMC406_4527  short-chain dehydrogenase/reductase SDR  44.91 
 
 
311 aa  221  1.9999999999999999e-56  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.207166 
 
 
-
 
NC_008391  Bamb_5413  short-chain dehydrogenase/reductase SDR  46.32 
 
 
308 aa  220  1.9999999999999999e-56  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3569  short-chain dehydrogenase/reductase SDR  46.32 
 
 
308 aa  219  3e-56  Burkholderia ambifaria MC40-6  Bacteria  normal  0.683076  hitchhiker  0.00146118 
 
 
-
 
NC_008391  Bamb_4069  short-chain dehydrogenase/reductase SDR  44.53 
 
 
312 aa  219  5e-56  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.596903 
 
 
-
 
NC_008061  Bcen_3693  short-chain dehydrogenase/reductase SDR  44.36 
 
 
309 aa  219  6e-56  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_5665  short-chain dehydrogenase/reductase SDR  48.68 
 
 
275 aa  218  7e-56  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4018  short-chain dehydrogenase/reductase SDR  43.66 
 
 
312 aa  218  7e-56  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.169146  normal  0.55969 
 
 
-
 
NC_007511  Bcep18194_B1144  Short-chain dehydrogenase/reductase SDR  43.87 
 
 
307 aa  215  5.9999999999999996e-55  Burkholderia sp. 383  Bacteria  normal  0.151567  normal  0.117156 
 
 
-
 
NC_014158  Tpau_1209  short-chain dehydrogenase/reductase SDR  47.24 
 
 
275 aa  214  1.9999999999999998e-54  Tsukamurella paurometabola DSM 20162  Bacteria  hitchhiker  0.00962961  n/a   
 
 
-
 
NC_009565  TBFG_11271  short-chain type dehydrogenase/reductase  44.69 
 
 
276 aa  214  1.9999999999999998e-54  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.0000317139  hitchhiker  0.0033897 
 
 
-
 
NC_010676  Bphyt_4878  short-chain dehydrogenase/reductase SDR  44.6 
 
 
302 aa  212  5.999999999999999e-54  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.00176242  normal  0.778008 
 
 
-
 
NC_007952  Bxe_B1790  short chain dehydrogenase  44.44 
 
 
307 aa  211  1e-53  Burkholderia xenovorans LB400  Bacteria  normal  hitchhiker  0.00000125648 
 
 
-
 
NC_009380  Strop_2396  short-chain dehydrogenase/reductase SDR  48.13 
 
 
321 aa  211  1e-53  Salinispora tropica CNB-440  Bacteria  normal  0.13478  normal 
 
 
-
 
NC_013441  Gbro_1880  short-chain dehydrogenase/reductase SDR  45.49 
 
 
276 aa  211  1e-53  Gordonia bronchialis DSM 43247  Bacteria  normal  0.138576  n/a   
 
 
-
 
NC_009565  TBFG_13102  short-chain type dehydrogenase/reductase  45.83 
 
 
276 aa  208  1e-52  Mycobacterium tuberculosis F11  Bacteria  normal  0.432292  normal 
 
 
-
 
NC_009077  Mjls_3989  short-chain dehydrogenase/reductase SDR  43.68 
 
 
276 aa  201  9.999999999999999e-51  Mycobacterium sp. JLS  Bacteria  normal  0.171067  normal  0.181158 
 
 
-
 
NC_008146  Mmcs_3975  short-chain dehydrogenase/reductase SDR  43.68 
 
 
276 aa  201  9.999999999999999e-51  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4049  short-chain dehydrogenase/reductase SDR  43.68 
 
 
276 aa  201  9.999999999999999e-51  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_4479  short-chain dehydrogenase/reductase SDR  43.02 
 
 
276 aa  201  9.999999999999999e-51  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0643496  normal  0.318534 
 
 
-
 
NC_014158  Tpau_2257  short-chain dehydrogenase/reductase SDR  45.28 
 
 
275 aa  197  2.0000000000000003e-49  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.116431  n/a   
 
 
-
 
NC_013757  Gobs_2356  short-chain dehydrogenase/reductase SDR  45.65 
 
 
282 aa  196  4.0000000000000005e-49  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0998128  n/a   
 
 
-
 
NC_009338  Mflv_2216  short-chain dehydrogenase/reductase SDR  41.51 
 
 
276 aa  192  4e-48  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.742045 
 
 
-
 
NC_009953  Sare_2544  short-chain dehydrogenase/reductase SDR  51.63 
 
 
313 aa  190  2e-47  Salinispora arenicola CNS-205  Bacteria  normal  0.638785  decreased coverage  0.00000422955 
 
 
-
 
NC_013174  Jden_0145  short-chain dehydrogenase/reductase SDR  37.92 
 
 
267 aa  169  5e-41  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_0294  short-chain dehydrogenase/reductase SDR  41.64 
 
 
262 aa  165  5.9999999999999996e-40  Mycobacterium sp. JLS  Bacteria  normal  0.948025  normal 
 
 
-
 
NC_008146  Mmcs_0303  short-chain dehydrogenase/reductase SDR  41.85 
 
 
262 aa  164  1.0000000000000001e-39  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0313  short-chain dehydrogenase/reductase SDR  41.85 
 
 
262 aa  164  1.0000000000000001e-39  Mycobacterium sp. KMS  Bacteria  normal  normal  0.19239 
 
 
-
 
NC_011831  Cagg_3168  short-chain dehydrogenase/reductase SDR  41.42 
 
 
269 aa  163  2.0000000000000002e-39  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.685444  normal 
 
 
-
 
NC_013946  Mrub_0175  short-chain dehydrogenase/reductase SDR  41.11 
 
 
267 aa  163  3e-39  Meiothermus ruber DSM 1279  Bacteria  normal  0.319176  normal 
 
 
-
 
NC_009664  Krad_2525  short-chain dehydrogenase/reductase SDR  38.95 
 
 
276 aa  161  1e-38  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_2754  short-chain dehydrogenase/reductase SDR  38.43 
 
 
275 aa  156  4e-37  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.433019  n/a   
 
 
-
 
NC_013169  Ksed_03130  short-chain dehydrogenase of unknown substrate specificity  38.29 
 
 
275 aa  155  7e-37  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_4313  short chain dehydrogenase  33.46 
 
 
290 aa  142  5e-33  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_13074  short chain dehydrogenase  35.69 
 
 
287 aa  140  1.9999999999999998e-32  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.486367 
 
 
-
 
NC_008726  Mvan_2034  short chain dehydrogenase  34.44 
 
 
290 aa  140  3e-32  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.304907  normal  0.959562 
 
 
-
 
NC_004578  PSPTO_1861  oxidoreductase, short chain dehydrogenase/reductase family  39.73 
 
 
270 aa  139  3.9999999999999997e-32  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0952097  n/a   
 
 
-
 
NC_005957  BT9727_3881  oxidoreductase, short-chain dehydrogenase/reductase  40.31 
 
 
264 aa  138  8.999999999999999e-32  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1244  short chain dehydrogenase  39.73 
 
 
270 aa  138  1e-31  Pseudomonas mendocina ymp  Bacteria  normal  0.542872  normal  0.404553 
 
 
-
 
NC_009656  PSPA7_1844  short chain dehydrogenase  41.55 
 
 
270 aa  137  1e-31  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_21640  short chain dehydrogenase  40.64 
 
 
270 aa  138  1e-31  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS4042  short chain dehydrogenase/reductase family oxidoreductase  39.79 
 
 
264 aa  136  3.0000000000000003e-31  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4357  short chain dehydrogenase/reductase family oxidoreductase  39.79 
 
 
264 aa  136  3.0000000000000003e-31  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A4268  oxidoreductase, short-chain dehydrogenase/reductase family  39.79 
 
 
264 aa  136  3.0000000000000003e-31  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK3889  short chain dehydrogenase/reductase family oxidoreductase  39.79 
 
 
264 aa  136  4e-31  Bacillus cereus E33L  Bacteria  normal  0.674087  n/a   
 
 
-
 
NC_011773  BCAH820_4158  oxidoreductase, short-chain dehydrogenase/reductase family  39.79 
 
 
264 aa  136  4e-31  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007492  Pfl01_4106  short chain dehydrogenase  38.81 
 
 
295 aa  136  5e-31  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.779242  normal  0.448814 
 
 
-
 
NC_009674  Bcer98_2831  short-chain dehydrogenase/reductase SDR  38.5 
 
 
264 aa  135  6.0000000000000005e-31  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_1337  3-ketoacyl-(acyl-carrier-protein) reductase  39.02 
 
 
238 aa  135  6.0000000000000005e-31  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.541378  normal 
 
 
-
 
NC_004578  PSPTO_1627  oxidoreductase, short chain dehydrogenase/reductase family  38.81 
 
 
271 aa  135  7.000000000000001e-31  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0861444  n/a   
 
 
-
 
NC_002947  PP_1745  short chain dehydrogenase  38.74 
 
 
269 aa  135  9.999999999999999e-31  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_5364  short-chain dehydrogenase/reductase SDR  33.98 
 
 
267 aa  135  9.999999999999999e-31  Haliangium ochraceum DSM 14365  Bacteria  normal  0.676071  normal 
 
 
-
 
NC_011772  BCG9842_B0992  oxidoreductase, short-chain dehydrogenase/reductase family  40.31 
 
 
264 aa  135  9.999999999999999e-31  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_3967  short-chain dehydrogenase/reductase SDR  39.8 
 
 
264 aa  134  9.999999999999999e-31  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0321162  n/a   
 
 
-
 
NC_007958  RPD_2691  short-chain dehydrogenase/reductase SDR  34.75 
 
 
322 aa  134  1.9999999999999998e-30  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.16655  normal 
 
 
-
 
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