More than 300 homologs were found in PanDaTox collection
for query gene Rmet_4358 on replicon NC_007974
Organism: Cupriavidus metallidurans CH34



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007974  Rmet_4358  succinyl-CoA synthetase, subunit alpha  100 
 
 
290 aa  575  1.0000000000000001e-163  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.122556 
 
 
-
 
NC_010623  Bphy_4692  succinyl-CoA synthetase, alpha subunit  84.42 
 
 
278 aa  473  1e-132  Burkholderia phymatum STM815  Bacteria  normal  0.243539  normal  0.0624727 
 
 
-
 
NC_009719  Plav_1453  succinyl-CoA synthetase subunit alpha  77.24 
 
 
291 aa  463  1e-129  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.33077  normal 
 
 
-
 
NC_009484  Acry_1624  succinyl-CoA synthetase, alpha subunit  75.86 
 
 
291 aa  451  1.0000000000000001e-126  Acidiphilium cryptum JF-5  Bacteria  normal  0.392007  n/a   
 
 
-
 
NC_008048  Sala_2229  succinyl-CoA synthetase, alpha subunit  75.09 
 
 
296 aa  448  1e-125  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_2882  succinyl-CoA ligase [ADP-forming] subunit alpha  75.68 
 
 
293 aa  444  1.0000000000000001e-124  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_1299  succinyl-CoA synthetase (ADP-forming) alpha subunit  75.43 
 
 
294 aa  447  1.0000000000000001e-124  Sphingomonas wittichii RW1  Bacteria  normal  0.825438  normal 
 
 
-
 
NC_007643  Rru_A1212  succinyl-CoA synthetase subunit alpha  78.28 
 
 
292 aa  441  1e-123  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_1181  succinyl-CoA synthetase (ADP-forming) alpha subunit  74.4 
 
 
296 aa  442  1e-123  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.115705  n/a   
 
 
-
 
NC_009428  Rsph17025_0078  succinyl-CoA synthetase, alpha subunit  74.32 
 
 
294 aa  438  9.999999999999999e-123  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.815822  normal  0.735177 
 
 
-
 
NC_007493  RSP_0966  succinyl-CoA synthetase (ADP-forming) alpha subunit  73.97 
 
 
294 aa  440  9.999999999999999e-123  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_0827  succinyl-CoA synthetase (ADP-forming) alpha subunit  75 
 
 
293 aa  439  9.999999999999999e-123  Jannaschia sp. CCS1  Bacteria  normal  normal  0.623831 
 
 
-
 
NC_009049  Rsph17029_2626  succinyl-CoA synthetase, alpha subunit  73.97 
 
 
294 aa  440  9.999999999999999e-123  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.639809  normal 
 
 
-
 
NC_010511  M446_2163  succinyl-CoA synthetase, alpha subunit  74.4 
 
 
294 aa  440  9.999999999999999e-123  Methylobacterium sp. 4-46  Bacteria  normal  0.612608  normal  0.179612 
 
 
-
 
NC_011004  Rpal_0185  succinyl-CoA synthetase, alpha subunit  74.4 
 
 
294 aa  436  1e-121  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0279  succinyl-CoA synthetase, alpha subunit  74.4 
 
 
294 aa  434  1e-121  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0600383 
 
 
-
 
NC_011757  Mchl_1927  succinyl-CoA synthetase, alpha subunit  74.74 
 
 
295 aa  436  1e-121  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0416872  normal 
 
 
-
 
NC_010172  Mext_1645  succinyl-CoA synthetase, alpha subunit  74.74 
 
 
295 aa  435  1e-121  Methylobacterium extorquens PA1  Bacteria  normal  0.277929  normal  0.44525 
 
 
-
 
NC_010725  Mpop_1585  succinyl-CoA synthetase, alpha subunit  73.72 
 
 
294 aa  432  1e-120  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0394  succinyl-CoA synthetase (ADP-forming) alpha subunit  73.04 
 
 
294 aa  433  1e-120  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.937536  normal  0.205798 
 
 
-
 
NC_011894  Mnod_1125  succinyl-CoA synthetase, alpha subunit  73.38 
 
 
294 aa  432  1e-120  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0337157  n/a   
 
 
-
 
NC_010338  Caul_0230  succinyl-CoA synthetase, alpha subunit  73.72 
 
 
294 aa  434  1e-120  Caulobacter sp. K31  Bacteria  normal  normal  0.340698 
 
 
-
 
NC_011901  Tgr7_0810  succinyl-CoA synthetase, alpha subunit  74.04 
 
 
288 aa  431  1e-120  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.674167  n/a   
 
 
-
 
NC_002978  WD1209  succinyl-CoA synthetase, alpha subunit  70 
 
 
291 aa  427  1e-119  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_007798  NSE_0250  succinyl-CoA synthetase, alpha subunit  71.68 
 
 
290 aa  427  1e-119  Neorickettsia sennetsu str. Miyayama  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_0539  succinyl-CoA synthetase, alpha subunit  73.38 
 
 
294 aa  427  1e-119  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_0921  succinyl-CoA synthetase, alpha subunit  72.7 
 
 
294 aa  430  1e-119  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.324584 
 
 
-
 
NC_011365  Gdia_3397  succinyl-CoA synthetase, alpha subunit  73.36 
 
 
293 aa  426  1e-118  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.891805 
 
 
-
 
NC_009720  Xaut_0491  succinyl-CoA synthetase, alpha subunit  73.72 
 
 
294 aa  427  1e-118  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_0155  succinyl-CoA synthetase, alpha subunit  73.72 
 
 
294 aa  427  1e-118  Xanthobacter autotrophicus Py2  Bacteria  normal  0.941694  normal 
 
 
-
 
NC_007925  RPC_0192  succinyl-CoA synthetase, alpha subunit  73.38 
 
 
294 aa  426  1e-118  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0543  succinyl-CoA synthetase, alpha subunit  73.04 
 
 
294 aa  427  1e-118  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_0421  succinyl-CoA ligase, alpha subunit  72.7 
 
 
294 aa  423  1e-117  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_3606  succinyl-CoA synthetase, alpha subunit  71.67 
 
 
294 aa  417  1e-116  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.0496602 
 
 
-
 
NC_007484  Noc_0714  succinyl-CoA ligase, alpha subunit  69.9 
 
 
291 aa  415  9.999999999999999e-116  Nitrosococcus oceani ATCC 19707  Bacteria  hitchhiker  0.0000108729  n/a   
 
 
-
 
NC_007947  Mfla_1888  succinyl-CoA synthetase (ADP-forming) alpha subunit  70.34 
 
 
292 aa  417  9.999999999999999e-116  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_1376  succinyl-CoA synthetase, alpha subunit  68.28 
 
 
299 aa  414  9.999999999999999e-116  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B0772  succinyl-CoA synthetase subunit alpha  68.97 
 
 
289 aa  411  1e-114  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A0895  succinyl-CoA synthetase subunit alpha  68.97 
 
 
289 aa  411  1e-114  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0404555  normal 
 
 
-
 
NC_009436  Ent638_1229  succinyl-CoA synthetase subunit alpha  68.97 
 
 
289 aa  413  1e-114  Enterobacter sp. 638  Bacteria  normal  normal  0.143875 
 
 
-
 
NC_008043  TM1040_3512  succinyl-CoA synthetase (ADP-forming) alpha subunit  71.92 
 
 
295 aa  412  1e-114  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A0798  succinyl-CoA synthetase subunit alpha  68.97 
 
 
289 aa  411  1e-114  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.0283915  normal  0.188512 
 
 
-
 
NC_008340  Mlg_2548  succinyl-CoA synthetase (ADP-forming) alpha subunit  69.82 
 
 
290 aa  412  1e-114  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.12229 
 
 
-
 
NC_011083  SeHA_C0862  succinyl-CoA synthetase subunit alpha  68.97 
 
 
289 aa  411  1e-114  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.0472557 
 
 
-
 
NC_009439  Pmen_2499  succinyl-CoA synthetase subunit alpha  69.58 
 
 
295 aa  410  1e-114  Pseudomonas mendocina ymp  Bacteria  normal  0.285546  normal  0.123009 
 
 
-
 
NC_011205  SeD_A0833  succinyl-CoA synthetase subunit alpha  68.62 
 
 
289 aa  410  1e-114  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.0260305  normal 
 
 
-
 
NC_013421  Pecwa_3097  succinyl-CoA synthetase subunit alpha  68.51 
 
 
290 aa  408  1e-113  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_00688  succinyl-CoA synthetase subunit alpha  68.28 
 
 
289 aa  410  1e-113  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2907  succinyl-CoA synthetase, alpha subunit  68.28 
 
 
289 aa  410  1e-113  Escherichia coli DH1  Bacteria  normal  0.398696  n/a   
 
 
-
 
NC_009800  EcHS_A0776  succinyl-CoA synthetase subunit alpha  68.28 
 
 
289 aa  410  1e-113  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A1387  succinyl-CoA synthetase subunit alpha  68.86 
 
 
290 aa  410  1e-113  Yersinia pestis Angola  Bacteria  normal  0.341558  normal 
 
 
-
 
NC_010468  EcolC_2927  succinyl-CoA synthetase subunit alpha  68.28 
 
 
289 aa  410  1e-113  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3685  succinyl-CoA synthetase subunit alpha  69.93 
 
 
295 aa  409  1e-113  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00677  hypothetical protein  68.28 
 
 
289 aa  410  1e-113  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp0600  succinyl-CoA synthetase, alpha subunit  67.6 
 
 
291 aa  408  1e-113  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl0581  succinyl-CoA synthetase, alpha subunit  67.6 
 
 
291 aa  408  1e-113  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009708  YpsIP31758_2878  succinyl-CoA synthetase subunit alpha  68.86 
 
 
290 aa  410  1e-113  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_2965  succinyl-CoA synthetase subunit alpha  68.86 
 
 
290 aa  410  1e-113  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2911  succinyl-CoA synthetase subunit alpha  68.17 
 
 
290 aa  407  1e-113  Dickeya zeae Ech1591  Bacteria  normal  0.861372  n/a   
 
 
-
 
NC_011353  ECH74115_0821  succinyl-CoA synthetase subunit alpha  68.28 
 
 
289 aa  410  1e-113  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_01878  Succinyl-CoA synthetase, alpha subunit  68.77 
 
 
290 aa  408  1e-113  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_1373  succinyl-CoA synthetase, alpha subunit  69.2 
 
 
293 aa  410  1e-113  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_0741  succinyl-CoA synthetase subunit alpha  68.28 
 
 
289 aa  410  1e-113  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_2180  succinyl-CoA synthetase, alpha subunit  69.47 
 
 
290 aa  408  1e-113  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1147  succinyl-CoA synthetase subunit alpha  67.93 
 
 
290 aa  408  1e-113  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E0648  succinyl-CoA synthetase subunit alpha  68.28 
 
 
289 aa  410  1e-113  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_1270  succinyl-CoA synthetase, alpha subunit  68.97 
 
 
290 aa  410  1e-113  Serratia proteamaculans 568  Bacteria  normal  0.531627  hitchhiker  0.00241286 
 
 
-
 
NC_008463  PA14_43940  succinyl-CoA synthetase subunit alpha  69.93 
 
 
295 aa  409  1e-113  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_1239  succinyl-CoA synthetase subunit alpha  68.51 
 
 
290 aa  409  1e-113  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.961959  n/a   
 
 
-
 
NC_013889  TK90_2039  succinyl-CoA synthetase, alpha subunit  67.47 
 
 
291 aa  409  1e-113  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_0755  succinyl-CoA synthetase subunit alpha  68.28 
 
 
289 aa  410  1e-113  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1430  succinyl-CoA synthetase alpha chain  69.82 
 
 
290 aa  409  1e-113  Shewanella amazonensis SB2B  Bacteria  normal  0.204322  normal 
 
 
-
 
NC_011146  Gbem_3222  succinyl-CoA synthetase, alpha subunit  68.97 
 
 
290 aa  407  1e-113  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1100  succinyl-CoA synthetase subunit alpha  66.9 
 
 
300 aa  404  1.0000000000000001e-112  Geobacillus sp. WCH70  Bacteria  normal  0.0979666  n/a   
 
 
-
 
NC_009901  Spea_1791  succinyl-CoA synthetase, alpha subunit  69.12 
 
 
290 aa  407  1.0000000000000001e-112  Shewanella pealeana ATCC 700345  Bacteria  normal  0.66969  n/a   
 
 
-
 
NC_009654  Mmwyl1_2796  succinyl-CoA synthetase, alpha subunit  68.42 
 
 
290 aa  405  1.0000000000000001e-112  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.623771 
 
 
-
 
NC_013422  Hneap_1989  succinyl-CoA synthetase, alpha subunit  68.4 
 
 
295 aa  404  1.0000000000000001e-112  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1221  succinyl-CoA synthetase (ADP-forming) alpha subunit  68.4 
 
 
290 aa  406  1.0000000000000001e-112  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1041  succinyl-CoA synthetase, alpha subunit  68.97 
 
 
290 aa  407  1.0000000000000001e-112  Geobacter sp. M21  Bacteria  n/a    normal  0.201704 
 
 
-
 
NC_009092  Shew_1658  succinyl-CoA synthetase, alpha subunit  68.64 
 
 
290 aa  406  1.0000000000000001e-112  Shewanella loihica PV-4  Bacteria  normal  0.0294249  normal  0.471073 
 
 
-
 
NC_002947  PP_4185  succinyl-CoA synthetase subunit alpha  68.88 
 
 
294 aa  401  1e-111  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_3508  succinyl-CoA synthetase subunit alpha  68.88 
 
 
294 aa  401  1e-111  Pseudomonas putida W619  Bacteria  normal  0.214073  normal  0.671935 
 
 
-
 
NC_009483  Gura_0156  succinyl-CoA synthetase, alpha subunit  69.12 
 
 
290 aa  401  1e-111  Geobacter uraniireducens Rf4  Bacteria  normal  0.852217  n/a   
 
 
-
 
NC_009483  Gura_3485  succinyl-CoA synthetase, alpha subunit  69.12 
 
 
290 aa  401  1e-111  Geobacter uraniireducens Rf4  Bacteria  normal  0.622532  n/a   
 
 
-
 
NC_007492  Pfl01_1618  succinyl-CoA synthetase subunit alpha  68.88 
 
 
294 aa  401  1e-111  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.161145  normal  0.222045 
 
 
-
 
NC_009727  CBUD_0598  succinyl-CoA synthetase alpha chain  65.74 
 
 
294 aa  401  1e-111  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_3756  succinyl-CoA synthetase subunit alpha  68.88 
 
 
294 aa  401  1e-111  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_004109  succinyl-CoA ligase [ADP-forming] alpha chain  69.61 
 
 
290 aa  403  1e-111  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_1669  succinyl-CoA synthetase subunit alpha  68.88 
 
 
294 aa  401  1e-111  Pseudomonas putida F1  Bacteria  normal  0.212959  normal 
 
 
-
 
NC_007912  Sde_2102  succinyl-CoA synthetase (ADP-forming) alpha subunit  67.02 
 
 
290 aa  402  1e-111  Saccharophagus degradans 2-40  Bacteria  normal  0.174971  normal 
 
 
-
 
NC_007969  Pcryo_0115  succinyl-CoA synthetase, alpha subunit  68.88 
 
 
291 aa  401  1e-111  Psychrobacter cryohalolentis K5  Bacteria  normal  0.732037  normal 
 
 
-
 
NC_008228  Patl_1802  succinyl-CoA synthetase, alpha subunit  68.55 
 
 
290 aa  403  1e-111  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.155061  n/a   
 
 
-
 
NC_009783  VIBHAR_01358  succinyl-CoA synthetase subunit alpha  69.26 
 
 
290 aa  402  1e-111  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_2811  succinyl-CoA synthetase, alpha subunit  68.07 
 
 
290 aa  402  1e-111  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_1158  succinyl-CoA synthetase, alpha subunit  68.42 
 
 
290 aa  402  1e-111  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_2222  succinyl-CoA synthase, alpha subunit  69.15 
 
 
290 aa  400  9.999999999999999e-111  Colwellia psychrerythraea 34H  Bacteria  normal  0.0851667  n/a   
 
 
-
 
NC_007005  Psyr_2013  succinyl-CoA synthetase subunit alpha  68.53 
 
 
293 aa  398  9.999999999999999e-111  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.143561  normal  0.801568 
 
 
-
 
NC_007204  Psyc_0106  succinyl-CoA synthetase (ADP-forming) alpha subunit  68.53 
 
 
291 aa  399  9.999999999999999e-111  Psychrobacter arcticus 273-4  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A1670  succinyl-CoA synthetase subunit alpha  67.72 
 
 
290 aa  399  9.999999999999999e-111  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2512  succinyl-CoA synthetase, alpha subunit  68.07 
 
 
290 aa  398  9.999999999999999e-111  Shewanella baltica OS155  Bacteria  normal  0.498228  n/a   
 
 
-
 
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