More than 300 homologs were found in PanDaTox collection
for query gene Rmet_4151 on replicon NC_007974
Organism: Cupriavidus metallidurans CH34



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007974  Rmet_4151  cold-shock DNA-binding domain-containing protein  100 
 
 
67 aa  137  6e-32  Cupriavidus metallidurans CH34  Bacteria  normal  0.19776  normal  0.285903 
 
 
-
 
NC_007348  Reut_B4951  cold-shock DNA-binding protein family protein  97.01 
 
 
67 aa  134  5e-31  Ralstonia eutropha JMP134  Bacteria  normal  0.0530166  n/a   
 
 
-
 
NC_010682  Rpic_1310  cold-shock DNA-binding domain protein  83.58 
 
 
67 aa  119  9.999999999999999e-27  Ralstonia pickettii 12J  Bacteria  decreased coverage  0.00171676  normal  0.537383 
 
 
-
 
NC_012856  Rpic12D_1374  cold-shock DNA-binding domain protein  83.58 
 
 
67 aa  119  9.999999999999999e-27  Ralstonia pickettii 12D  Bacteria  normal  0.215281  normal  0.985957 
 
 
-
 
NC_007348  Reut_B5185  cold-shock DNA-binding protein family protein  83.58 
 
 
67 aa  118  1.9999999999999998e-26  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_5171  cold-shock DNA-binding domain-containing protein  80.6 
 
 
126 aa  117  3.9999999999999996e-26  Cupriavidus metallidurans CH34  Bacteria  normal  0.515643  normal  0.7858 
 
 
-
 
NC_003295  RSc3156  cold shock-like transcription regulator protein  77.61 
 
 
67 aa  112  2.0000000000000002e-24  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.82157 
 
 
-
 
NC_007404  Tbd_0679  cold-shock DNA-binding protein family protein  71.64 
 
 
68 aa  103  1e-21  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.233328  normal  0.774201 
 
 
-
 
NC_007951  Bxe_A0798  cold-shock DNA-binding protein family protein  75.76 
 
 
68 aa  102  1e-21  Burkholderia xenovorans LB400  Bacteria  decreased coverage  0.0000000000000106482  normal 
 
 
-
 
NC_010681  Bphyt_3167  cold-shock DNA-binding domain protein  75.76 
 
 
68 aa  102  1e-21  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.0000000493488  hitchhiker  0.00220171 
 
 
-
 
NC_010622  Bphy_0567  cold-shock DNA-binding domain-containing protein  74.24 
 
 
68 aa  102  2e-21  Burkholderia phymatum STM815  Bacteria  unclonable  0.0000000000101913  hitchhiker  0.000143899 
 
 
-
 
NC_008542  Bcen2424_2520  cold-shock DNA-binding domain-containing protein  74.24 
 
 
67 aa  99.8  1e-20  Burkholderia cenocepacia HI2424  Bacteria  unclonable  0.000000000000151269  n/a   
 
 
-
 
NC_008543  Bcen2424_5764  cold-shock DNA-binding domain-containing protein  71.88 
 
 
170 aa  99.8  1e-20  Burkholderia cenocepacia HI2424  Bacteria  normal  hitchhiker  0.008002 
 
 
-
 
NC_010508  Bcenmc03_2545  cold-shock DNA-binding domain-containing protein  74.24 
 
 
67 aa  99.8  1e-20  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.000000242015  decreased coverage  0.000000000715587 
 
 
-
 
NC_007510  Bcep18194_A5852  cold-shock DNA-binding protein family protein  74.24 
 
 
67 aa  99.8  1e-20  Burkholderia sp. 383  Bacteria  decreased coverage  0.0000000000587256  normal  0.480668 
 
 
 
NC_008060  Bcen_1909  cold-shock DNA-binding domain-containing protein  74.24 
 
 
67 aa  99.8  1e-20  Burkholderia cenocepacia AU 1054  Bacteria  hitchhiker  0.0000000083542  n/a   
 
 
-
 
NC_003296  RSp1053  cold shock-like transcription regulator protein  72.73 
 
 
67 aa  99  2e-20  Ralstonia solanacearum GMI1000  Bacteria  normal  0.470883  normal 
 
 
-
 
NC_007404  Tbd_0855  cold-shock DNA-binding protein family protein  71.21 
 
 
68 aa  99  2e-20  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.563444  normal  0.445485 
 
 
-
 
NC_007298  Daro_1388  cold-shock DNA-binding protein family protein  68.66 
 
 
67 aa  98.2  3e-20  Dechloromonas aromatica RCB  Bacteria  decreased coverage  0.0000000000000202704  normal  0.239262 
 
 
-
 
NC_007336  Reut_C6028  cold-shock DNA-binding protein family protein  68.66 
 
 
67 aa  98.2  3e-20  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_1112  cold shock transcription regulator protein  72.73 
 
 
81 aa  98.6  3e-20  Burkholderia pseudomallei 1710b  Bacteria  hitchhiker  0.00000000170415  n/a   
 
 
-
 
NC_007651  BTH_I0761  cold-shock domain-contain protein  72.73 
 
 
81 aa  98.6  3e-20  Burkholderia thailandensis E264  Bacteria  unclonable  0.00000000000025188  n/a   
 
 
-
 
NC_009074  BURPS668_0958  cold shock protein  72.73 
 
 
67 aa  97.8  4e-20  Burkholderia pseudomallei 668  Bacteria  unclonable  0.000000000000117939  n/a   
 
 
-
 
NC_003295  RSc2466  cold shock-like transcription regulator protein  71.21 
 
 
67 aa  97.8  4e-20  Ralstonia solanacearum GMI1000  Bacteria  normal  0.4868  normal 
 
 
-
 
NC_006348  BMA2279  cold-shock domain-contain protein  72.73 
 
 
67 aa  97.8  4e-20  Burkholderia mallei ATCC 23344  Bacteria  decreased coverage  0.000000000750079  n/a   
 
 
-
 
NC_009080  BMA10247_2156  cold-shock domain-contain protein  72.73 
 
 
67 aa  97.8  4e-20  Burkholderia mallei NCTC 10247  Bacteria  hitchhiker  0.00000351487  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0574  cold-shock domain-contain protein  72.73 
 
 
67 aa  97.8  4e-20  Burkholderia mallei SAVP1  Bacteria  hitchhiker  0.000000000000358394  n/a   
 
 
-
 
NC_009076  BURPS1106A_0962  cold shock protein  72.73 
 
 
67 aa  97.8  4e-20  Burkholderia pseudomallei 1106a  Bacteria  decreased coverage  0.000153995  n/a   
 
 
-
 
NC_010084  Bmul_0775  cold-shock DNA-binding domain-containing protein  72.73 
 
 
67 aa  97.8  4e-20  Burkholderia multivorans ATCC 17616  Bacteria  decreased coverage  0.0000000000150831  hitchhiker  0.000000000149768 
 
 
-
 
NC_008836  BMA10229_A1051  cold-shock domain-contain protein  72.73 
 
 
67 aa  97.8  4e-20  Burkholderia mallei NCTC 10229  Bacteria  hitchhiker  0.000000000117316  n/a   
 
 
-
 
NC_010551  BamMC406_2438  cold-shock DNA-binding domain-containing protein  72.73 
 
 
67 aa  97.8  4e-20  Burkholderia ambifaria MC40-6  Bacteria  unclonable  0.00000000000180609  unclonable  0.0000000000176576 
 
 
-
 
NC_008390  Bamb_2568  cold-shock DNA-binding domain-containing protein  72.73 
 
 
67 aa  97.8  4e-20  Burkholderia ambifaria AMMD  Bacteria  hitchhiker  0.000000063088  n/a   
 
 
-
 
NC_010678  Rpic_4276  cold-shock DNA-binding domain protein  75 
 
 
67 aa  97.4  5e-20  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4386  cold-shock DNA-binding domain protein  75 
 
 
67 aa  97.4  5e-20  Ralstonia pickettii 12D  Bacteria  normal  normal  0.490734 
 
 
-
 
NC_010515  Bcenmc03_4409  cold-shock DNA-binding domain-containing protein  71.88 
 
 
67 aa  97.4  6e-20  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007336  Reut_C6014  cold-shock DNA-binding protein family protein  67.16 
 
 
67 aa  97.1  7e-20  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A2596  cold-shock DNA-binding protein family protein  69.7 
 
 
67 aa  97.1  7e-20  Burkholderia xenovorans LB400  Bacteria  normal  0.111063  normal 
 
 
-
 
NC_008061  Bcen_5095  cold-shock DNA-binding domain-containing protein  71.88 
 
 
67 aa  97.1  7e-20  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010557  BamMC406_5581  cold-shock DNA-binding domain-containing protein  68.66 
 
 
67 aa  96.7  9e-20  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008392  Bamb_5798  cold-shock DNA-binding domain-containing protein  68.66 
 
 
67 aa  96.3  1e-19  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.992183 
 
 
-
 
NC_010622  Bphy_2727  cold-shock DNA-binding domain-containing protein  71.21 
 
 
67 aa  95.9  1e-19  Burkholderia phymatum STM815  Bacteria  normal  0.312449  normal 
 
 
-
 
NC_007005  Psyr_2160  cold-shock protein, DNA-binding  69.23 
 
 
70 aa  95.9  1e-19  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.233344  normal 
 
 
-
 
NC_007298  Daro_3093  cold-shock DNA-binding protein family protein  69.7 
 
 
72 aa  96.3  1e-19  Dechloromonas aromatica RCB  Bacteria  normal  0.475725  normal 
 
 
-
 
NC_007614  Nmul_A2246  cold-shock DNA-binding domain-containing protein  69.7 
 
 
67 aa  96.3  1e-19  Nitrosospira multiformis ATCC 25196  Bacteria  decreased coverage  0.000000157436  n/a   
 
 
-
 
NC_011662  Tmz1t_1374  cold-shock DNA-binding domain protein  68.18 
 
 
67 aa  96.3  1e-19  Thauera sp. MZ1T  Bacteria  normal  0.287556  n/a   
 
 
-
 
NC_007952  Bxe_B2951  cold-shock DNA-binding protein family protein  69.7 
 
 
77 aa  95.9  1e-19  Burkholderia xenovorans LB400  Bacteria  normal  0.15288  normal 
 
 
-
 
NC_011662  Tmz1t_1251  cold-shock DNA-binding domain protein  70.77 
 
 
67 aa  95.5  2e-19  Thauera sp. MZ1T  Bacteria  normal  0.791861  n/a   
 
 
-
 
NC_004578  PSPTO_2376  cold shock domain family protein  69.23 
 
 
70 aa  95.9  2e-19  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.85246  n/a   
 
 
-
 
NC_010627  Bphy_7382  cold-shock DNA-binding domain-containing protein  68.66 
 
 
67 aa  95.5  2e-19  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0708981 
 
 
-
 
NC_010676  Bphyt_6907  cold-shock DNA-binding domain protein  69.7 
 
 
67 aa  95.9  2e-19  Burkholderia phytofirmans PsJN  Bacteria  normal  0.240211  normal  0.394944 
 
 
-
 
NC_007947  Mfla_2140  cold-shock DNA-binding protein family protein  70.77 
 
 
67 aa  95.5  2e-19  Methylobacillus flagellatus KT  Bacteria  decreased coverage  0.000000000648799  normal 
 
 
-
 
NC_007005  Psyr_1094  cold-shock protein, DNA-binding  70.77 
 
 
70 aa  94.7  3e-19  Pseudomonas syringae pv. syringae B728a  Bacteria  hitchhiker  0.00306206  normal 
 
 
-
 
NC_010322  PputGB1_0990  cold-shock DNA-binding domain-containing protein  68.18 
 
 
70 aa  95.1  3e-19  Pseudomonas putida GB-1  Bacteria  normal  0.0731178  normal 
 
 
-
 
NC_011071  Smal_1625  cold-shock DNA-binding domain protein  66.67 
 
 
69 aa  95.1  3e-19  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.778402  normal  0.204275 
 
 
-
 
NC_010322  PputGB1_3483  cold-shock DNA-binding domain-containing protein  67.69 
 
 
70 aa  94.7  4e-19  Pseudomonas putida GB-1  Bacteria  normal  0.207055  normal  0.0338515 
 
 
-
 
NC_010676  Bphyt_6765  cold-shock DNA-binding domain protein  65.67 
 
 
67 aa  94.4  4e-19  Burkholderia phytofirmans PsJN  Bacteria  normal  0.929729  normal  0.307986 
 
 
-
 
NC_008463  PA14_21760  cold acclimation protein B  68.18 
 
 
69 aa  94.4  5e-19  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.342335  normal  0.456476 
 
 
-
 
NC_010681  Bphyt_3528  cold-shock DNA-binding domain protein  67.16 
 
 
67 aa  94.4  5e-19  Burkholderia phytofirmans PsJN  Bacteria  decreased coverage  0.00720053  normal  0.332876 
 
 
-
 
NC_009656  PSPA7_1855  cold acclimation protein B  68.18 
 
 
69 aa  94.4  5e-19  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0386681  n/a   
 
 
-
 
NC_009439  Pmen_3523  cold-shock DNA-binding protein family protein  68.18 
 
 
70 aa  94.4  5e-19  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.32154 
 
 
-
 
NC_007951  Bxe_A0430  cold-shock DNA-binding protein family protein  67.16 
 
 
67 aa  94.4  5e-19  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.0000180464  normal 
 
 
-
 
NC_007952  Bxe_B2780  cold-shock DNA-binding protein family protein  65.67 
 
 
67 aa  94.4  5e-19  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.00000626517  normal 
 
 
-
 
NC_010623  Bphy_5169  cold-shock DNA-binding domain-containing protein  69.7 
 
 
67 aa  94.4  5e-19  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A0913  cold-shock DNA-binding protein family protein  67.16 
 
 
67 aa  94  6e-19  Burkholderia xenovorans LB400  Bacteria  normal  0.587921  normal 
 
 
-
 
NC_002947  PP_0985  cold-shock domain-contain protein  66.67 
 
 
165 aa  93.6  7e-19  Pseudomonas putida KT2440  Bacteria  normal  0.693181  normal 
 
 
-
 
NC_010681  Bphyt_2202  cold-shock DNA-binding domain protein  67.16 
 
 
67 aa  94  7e-19  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_5269  cold-shock DNA-binding domain-containing protein  65.67 
 
 
67 aa  94  7e-19  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0859722 
 
 
-
 
NC_007951  Bxe_A2061  cold-shock DNA-binding protein family protein  67.16 
 
 
67 aa  94  7e-19  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.131927 
 
 
-
 
NC_012856  Rpic12D_2345  cold-shock DNA-binding domain protein  68.18 
 
 
67 aa  93.6  7e-19  Ralstonia pickettii 12D  Bacteria  normal  0.574294  normal  0.405321 
 
 
-
 
NC_010682  Rpic_2735  cold-shock DNA-binding domain protein  68.18 
 
 
67 aa  93.6  7e-19  Ralstonia pickettii 12J  Bacteria  normal  0.723886  normal  0.792546 
 
 
-
 
NC_009379  Pnuc_0586  cold-shock DNA-binding domain-containing protein  67.16 
 
 
67 aa  93.6  8e-19  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_1929  cold-shock DNA-binding protein family protein  67.69 
 
 
70 aa  93.6  8e-19  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.00237274  normal 
 
 
-
 
NC_012560  Avin_11700  Cold shock domain family protein  69.7 
 
 
70 aa  93.2  1e-18  Azotobacter vinelandii DJ  Bacteria  normal  0.0476912  n/a   
 
 
-
 
NC_010501  PputW619_4233  cold-shock DNA-binding domain-containing protein  68.18 
 
 
70 aa  92.8  1e-18  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A1291  cold-shock DNA-binding domain-containing protein  69.7 
 
 
67 aa  92.8  1e-18  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.515471  n/a   
 
 
-
 
NC_007963  Csal_2503  cold-shock DNA-binding protein family protein  62.69 
 
 
68 aa  92.8  1e-18  Chromohalobacter salexigens DSM 3043  Bacteria  hitchhiker  0.00000079429  n/a   
 
 
-
 
NC_008391  Bamb_3900  cold-shock DNA-binding domain-containing protein  68.75 
 
 
67 aa  92.8  1e-18  Burkholderia ambifaria AMMD  Bacteria  normal  0.878106  normal 
 
 
-
 
NC_010552  BamMC406_4361  cold-shock DNA-binding domain-containing protein  68.75 
 
 
67 aa  92.8  1e-18  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_0877  cold-shock DNA-binding domain-containing protein  65.67 
 
 
67 aa  93.2  1e-18  Burkholderia ambifaria MC40-6  Bacteria  normal  0.351907  normal 
 
 
-
 
NC_008390  Bamb_0865  cold-shock DNA-binding domain-containing protein  65.67 
 
 
67 aa  93.2  1e-18  Burkholderia ambifaria AMMD  Bacteria  hitchhiker  0.0000000217633  n/a   
 
 
-
 
NC_008542  Bcen2424_1005  cold-shock DNA-binding domain-containing protein  65.67 
 
 
67 aa  92.4  2e-18  Burkholderia cenocepacia HI2424  Bacteria  decreased coverage  0.000000000138361  n/a   
 
 
-
 
NC_004578  PSPTO_1274  cold shock domain family protein  67.69 
 
 
70 aa  92  2e-18  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0965  cold-shock DNA-binding domain-containing protein  65.67 
 
 
67 aa  92.4  2e-18  Burkholderia cenocepacia MC0-3  Bacteria  unclonable  0.00000000000119944  normal  0.392298 
 
 
-
 
NC_010622  Bphy_0676  cold-shock DNA-binding domain-containing protein  65.67 
 
 
67 aa  92.4  2e-18  Burkholderia phymatum STM815  Bacteria  normal  0.197262  normal  0.753603 
 
 
-
 
NC_007492  Pfl01_4395  cold-shock DNA-binding protein  69.23 
 
 
70 aa  92  2e-18  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.314613 
 
 
-
 
NC_007510  Bcep18194_A4113  cold-shock DNA-binding protein family protein  65.67 
 
 
67 aa  92.4  2e-18  Burkholderia sp. 383  Bacteria  hitchhiker  0.0000000000103179  normal  0.421912 
 
 
-
 
NC_008060  Bcen_0527  cold-shock DNA-binding domain-containing protein  65.67 
 
 
67 aa  92.4  2e-18  Burkholderia cenocepacia AU 1054  Bacteria  unclonable  0.0000000000967156  n/a   
 
 
-
 
NC_003296  RSp0002  cold shock-like transcription regulator protein  66.67 
 
 
67 aa  91.7  3e-18  Ralstonia solanacearum GMI1000  Bacteria  unclonable  0.0000000106276  normal 
 
 
-
 
NC_004578  PSPTO_4145  cold shock protein CapB  65.15 
 
 
69 aa  92  3e-18  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3884  cold-shock protein, DNA-binding  65.15 
 
 
69 aa  92  3e-18  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.218294  normal  0.489383 
 
 
-
 
NC_007492  Pfl01_1201  cold-shock DNA-binding protein family protein  65.15 
 
 
69 aa  92  3e-18  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.227908 
 
 
-
 
NC_012857  Rpic12D_3895  cold-shock DNA-binding domain protein  66.67 
 
 
67 aa  91.7  3e-18  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_3782  cold-shock DNA-binding domain protein  66.67 
 
 
67 aa  91.7  3e-18  Ralstonia pickettii 12J  Bacteria  normal  0.0399631  normal  0.208523 
 
 
-
 
NC_009439  Pmen_1407  cold-shock DNA-binding protein family protein  65.15 
 
 
69 aa  91.7  3e-18  Pseudomonas mendocina ymp  Bacteria  normal  0.0231172  normal  0.970454 
 
 
-
 
NC_010681  Bphyt_3078  cold-shock DNA-binding domain protein  65.67 
 
 
67 aa  91.7  3e-18  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_1668  cold-shock DNA-binding protein family protein  66.15 
 
 
67 aa  91.7  3e-18  Chromohalobacter salexigens DSM 3043  Bacteria  decreased coverage  0.0000281076  n/a   
 
 
-
 
NC_010084  Bmul_2393  cold-shock DNA-binding domain-containing protein  65.67 
 
 
67 aa  92  3e-18  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1022  cold-shock DNA-binding domain-containing protein  66.67 
 
 
69 aa  91.3  4e-18  Pseudomonas putida F1  Bacteria  normal  normal  0.908302 
 
 
-
 
NC_010623  Bphy_4995  cold-shock DNA-binding domain-containing protein  65.67 
 
 
67 aa  91.3  4e-18  Burkholderia phymatum STM815  Bacteria  normal  0.833631  normal 
 
 
-
 
NC_008543  Bcen2424_4464  cold-shock DNA-binding domain-containing protein  67.19 
 
 
67 aa  90.9  5e-18  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
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