More than 300 homologs were found in PanDaTox collection
for query gene Rmet_0008 on replicon NC_007973
Organism: Cupriavidus metallidurans CH34



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007973  Rmet_0008  binding-protein-dependent transport systems inner membrane component  100 
 
 
295 aa  585  1e-166  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_1209  binding-protein-dependent transport systems inner membrane component  72.18 
 
 
284 aa  390  1e-107  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3122  ABC sugar transporter, inner membrane subunit  65.15 
 
 
281 aa  373  1e-102  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_3316  binding-protein-dependent transport systems inner membrane component  64.77 
 
 
281 aa  371  1e-102  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3230  binding-protein-dependent transport systems inner membrane component  64.39 
 
 
281 aa  369  1e-101  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1664  binding-protein-dependent transport systems inner membrane component  64.75 
 
 
281 aa  361  9e-99  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.150444  normal 
 
 
-
 
NC_011366  Rleg2_5715  binding-protein-dependent transport systems inner membrane component  43.37 
 
 
311 aa  228  8e-59  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.578248 
 
 
-
 
NC_012848  Rleg_5335  binding-protein-dependent transport systems inner membrane component  41.84 
 
 
299 aa  228  1e-58  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.494114 
 
 
-
 
NC_007948  Bpro_1260  binding-protein-dependent transport systems inner membrane component  43.28 
 
 
291 aa  226  3e-58  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4330  binding-protein-dependent transport systems inner membrane component  43.37 
 
 
299 aa  226  3e-58  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0255144 
 
 
-
 
NC_011894  Mnod_1415  binding-protein-dependent transport systems inner membrane component  43.17 
 
 
292 aa  216  2.9999999999999998e-55  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3320  binding-protein-dependent transport systems inner membrane component  42.8 
 
 
306 aa  216  4e-55  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.516891  normal 
 
 
-
 
NC_007778  RPB_2099  binding-protein dependent transport system inner membrane protein  42.44 
 
 
307 aa  214  9.999999999999999e-55  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.642563  decreased coverage  0.0000998416 
 
 
-
 
NC_007925  RPC_3644  binding-protein-dependent transport systems inner membrane component  42.19 
 
 
306 aa  214  9.999999999999999e-55  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.433095 
 
 
-
 
NC_010511  M446_0820  binding-protein-dependent transport systems inner membrane component  42.8 
 
 
291 aa  214  9.999999999999999e-55  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_3958  binding-protein-dependent transport systems inner membrane component  43.36 
 
 
308 aa  214  9.999999999999999e-55  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.809225  n/a   
 
 
-
 
NC_010505  Mrad2831_2890  binding-protein-dependent transport systems inner membrane component  44.53 
 
 
312 aa  214  9.999999999999999e-55  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.908761  normal  0.323454 
 
 
-
 
NC_009485  BBta_3556  putative ABC transporter permease protein  42.58 
 
 
302 aa  211  1e-53  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_2908  binding-protein-dependent transport systems inner membrane component  38.49 
 
 
303 aa  192  6e-48  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.265009  normal  0.0499964 
 
 
-
 
NC_007778  RPB_2548  binding-protein dependent transport system inner membrane protein  38.01 
 
 
304 aa  190  2e-47  Rhodopseudomonas palustris HaA2  Bacteria  decreased coverage  0.00362276  normal 
 
 
-
 
NC_009485  BBta_4119  ABC transporter permease protein  37.05 
 
 
303 aa  189  5.999999999999999e-47  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0396939  normal  0.542053 
 
 
-
 
NC_009720  Xaut_0498  binding-protein-dependent transport systems inner membrane component  48.86 
 
 
219 aa  168  1e-40  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_3589  binding-protein-dependent transport systems inner membrane component  34.57 
 
 
276 aa  154  1e-36  Sinorhizobium medicae WSM419  Bacteria  normal  0.577285  normal 
 
 
-
 
NC_014165  Tbis_1884  binding-protein-dependent transporter inner membrane component  31.11 
 
 
278 aa  153  2.9999999999999998e-36  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.683331 
 
 
-
 
NC_012669  Bcav_1682  binding-protein-dependent transport systems inner membrane component  37.5 
 
 
275 aa  152  5.9999999999999996e-36  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.299262  normal 
 
 
-
 
NC_007908  Rfer_0952  binding-protein-dependent transport systems inner membrane component  33.85 
 
 
271 aa  147  2.0000000000000003e-34  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_2899  binding-protein-dependent transport systems inner membrane component  34.08 
 
 
316 aa  146  3e-34  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008541  Arth_0050  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
305 aa  146  4.0000000000000006e-34  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3555  binding-protein-dependent transport systems inner membrane component  38.5 
 
 
279 aa  145  1e-33  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0749  binding-protein-dependent transport systems inner membrane component  32.28 
 
 
306 aa  144  1e-33  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00175385 
 
 
-
 
NC_008786  Veis_1881  binding-protein-dependent transport systems inner membrane component  30.32 
 
 
277 aa  144  2e-33  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.31192  normal  0.345507 
 
 
-
 
NC_009380  Strop_0805  binding-protein-dependent transport systems inner membrane component  31.89 
 
 
311 aa  143  3e-33  Salinispora tropica CNB-440  Bacteria  normal  0.736814  normal 
 
 
-
 
NC_008243  Meso_4515  binding-protein-dependent transport systems inner membrane component  30.97 
 
 
275 aa  142  9.999999999999999e-33  Chelativorans sp. BNC1  Bacteria  normal  0.275064  n/a   
 
 
-
 
NC_011899  Hore_00800  binding-protein-dependent transport systems inner membrane component  31.33 
 
 
280 aa  140  1.9999999999999998e-32  Halothermothrix orenii H 168  Bacteria  normal  0.303025  n/a   
 
 
-
 
NC_012034  Athe_2308  binding-protein-dependent transport systems inner membrane component  31.52 
 
 
283 aa  140  1.9999999999999998e-32  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.0000390677  n/a   
 
 
-
 
NC_013946  Mrub_2088  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
282 aa  140  3e-32  Meiothermus ruber DSM 1279  Bacteria  hitchhiker  0.00655693  normal  0.897951 
 
 
-
 
NC_008148  Rxyl_0067  binding-protein-dependent transport systems inner membrane component  32.86 
 
 
282 aa  140  3e-32  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_11600  carbohydrate ABC transporter membrane protein  30.71 
 
 
283 aa  140  3e-32  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_3341  putative sugar ABC transporter, permease protein  29.26 
 
 
292 aa  139  7e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  0.22127  normal  0.118781 
 
 
-
 
NC_013525  Tter_0399  binding-protein-dependent transport systems inner membrane component  32.59 
 
 
286 aa  136  3.0000000000000003e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008528  OEOE_0255  ABC-type maltose transport system, permease component  31.07 
 
 
276 aa  137  3.0000000000000003e-31  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0395  binding-protein-dependent transport systems inner membrane component  31.99 
 
 
277 aa  136  4e-31  Thermoanaerobacter sp. X514  Bacteria  normal  0.230637  n/a   
 
 
-
 
NC_009616  Tmel_1818  binding-protein-dependent transport systems inner membrane component  30.71 
 
 
279 aa  135  6.0000000000000005e-31  Thermosipho melanesiensis BI429  Bacteria  normal  0.675174  n/a   
 
 
-
 
NC_010483  TRQ2_0972  binding-protein-dependent transport systems inner membrane component  30.42 
 
 
278 aa  135  7.000000000000001e-31  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.00136246  n/a   
 
 
-
 
NC_009486  Tpet_0956  binding-protein-dependent transport systems inner membrane component  30.42 
 
 
278 aa  135  7.000000000000001e-31  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_2110  binding-protein-dependent transport systems inner membrane component  28.1 
 
 
316 aa  135  8e-31  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.523457 
 
 
-
 
NC_013093  Amir_0401  binding-protein-dependent transport systems inner membrane component  32.85 
 
 
273 aa  135  9e-31  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_0448  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
281 aa  135  9.999999999999999e-31  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1103  binding-protein-dependent transporter inner membrane component  32.96 
 
 
283 aa  134  9.999999999999999e-31  Thermobispora bispora DSM 43833  Bacteria  normal  0.216355  normal  0.105298 
 
 
-
 
NC_012669  Bcav_3773  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
279 aa  134  9.999999999999999e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.468941  normal 
 
 
-
 
NC_008699  Noca_1418  binding-protein-dependent transport systems inner membrane component  32.06 
 
 
276 aa  135  9.999999999999999e-31  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_4865  binding-protein-dependent transport systems inner membrane component  34.09 
 
 
296 aa  134  9.999999999999999e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.174421 
 
 
-
 
NC_011369  Rleg2_3667  binding-protein-dependent transport systems inner membrane component  34.09 
 
 
296 aa  134  1.9999999999999998e-30  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_0749  binding-protein-dependent transport systems inner membrane component  32 
 
 
278 aa  133  3e-30  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0029  binding-protein-dependent transport systems inner membrane component  30.53 
 
 
283 aa  132  5e-30  Petrotoga mobilis SJ95  Bacteria  unclonable  0.0000000511748  n/a   
 
 
-
 
NC_013093  Amir_0350  binding-protein-dependent transport systems inner membrane component  30.11 
 
 
297 aa  132  5e-30  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4398  binding-protein-dependent transport systems inner membrane component  29.43 
 
 
292 aa  132  6.999999999999999e-30  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.445244 
 
 
-
 
NC_009636  Smed_2422  binding-protein-dependent transport systems inner membrane component  33.1 
 
 
277 aa  132  7.999999999999999e-30  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.161716 
 
 
-
 
NC_013526  Tter_2701  binding-protein-dependent transport systems inner membrane component  29.54 
 
 
275 aa  132  9e-30  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.0563997  n/a   
 
 
-
 
NC_013595  Sros_2192  putative sugar ABC transporter, permease protein  31.82 
 
 
283 aa  130  3e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_2942  binding-protein-dependent transport systems inner membrane component  35.63 
 
 
275 aa  130  3e-29  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.667129  n/a   
 
 
-
 
NC_012853  Rleg_5696  binding-protein-dependent transport systems inner membrane component  30.29 
 
 
283 aa  129  4.0000000000000003e-29  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.697019  normal  0.0828938 
 
 
-
 
NC_013521  Sked_02950  carbohydrate ABC transporter membrane protein  28.11 
 
 
297 aa  129  5.0000000000000004e-29  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0307  binding-protein-dependent transport systems inner membrane component  30.92 
 
 
274 aa  129  7.000000000000001e-29  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_4265  binding-protein-dependent transport systems inner membrane component  32 
 
 
293 aa  129  8.000000000000001e-29  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_25430  carbohydrate ABC transporter membrane protein  32.16 
 
 
275 aa  129  8.000000000000001e-29  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0542318  n/a   
 
 
-
 
NC_007760  Adeh_4134  ABC sugar transporter, inner membrane subunit  32 
 
 
295 aa  128  1.0000000000000001e-28  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011366  Rleg2_5850  binding-protein-dependent transport systems inner membrane component  31.94 
 
 
276 aa  128  1.0000000000000001e-28  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.590535  normal 
 
 
-
 
NC_009832  Spro_2524  binding-protein-dependent transport systems inner membrane component  32.82 
 
 
281 aa  128  1.0000000000000001e-28  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_1810  putative sugar ABC transporter, permease protein  29.56 
 
 
280 aa  128  1.0000000000000001e-28  Escherichia coli SMS-3-5  Bacteria  normal  0.817708  normal 
 
 
-
 
NC_009012  Cthe_1018  binding-protein-dependent transport systems inner membrane component  31.85 
 
 
289 aa  128  1.0000000000000001e-28  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.062951  n/a   
 
 
-
 
NC_004311  BRA0306  sugar ABC transporter, permease protein  34.4 
 
 
275 aa  127  2.0000000000000002e-28  Brucella suis 1330  Bacteria  normal  0.147324  n/a   
 
 
-
 
NC_013517  Sterm_1526  binding-protein-dependent transport systems inner membrane component  29.33 
 
 
283 aa  127  2.0000000000000002e-28  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2199  monosaccharide-transporting ATPase  30.42 
 
 
269 aa  127  2.0000000000000002e-28  Thermoanaerobacter sp. X514  Bacteria  normal  0.139368  n/a   
 
 
-
 
NC_008010  Dgeo_2818  binding-protein-dependent transport systems inner membrane component  31.66 
 
 
255 aa  127  2.0000000000000002e-28  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_5211  binding-protein-dependent transport systems inner membrane component  31.37 
 
 
281 aa  127  2.0000000000000002e-28  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.610418 
 
 
-
 
NC_011891  A2cp1_4287  binding-protein-dependent transport systems inner membrane component  32 
 
 
293 aa  127  2.0000000000000002e-28  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_3350  binding-protein-dependent transport systems inner membrane component  32.59 
 
 
274 aa  127  3e-28  Variovorax paradoxus S110  Bacteria  normal  0.610127  n/a   
 
 
-
 
NC_014212  Mesil_3058  binding-protein-dependent transport systems inner membrane component  31.48 
 
 
286 aa  127  3e-28  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_2542  binding-protein-dependent transport systems inner membrane component  30.42 
 
 
275 aa  127  3e-28  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.607728  normal 
 
 
-
 
NC_011368  Rleg2_5474  binding-protein-dependent transport systems inner membrane component  31.37 
 
 
280 aa  126  3e-28  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.9066  normal  0.435889 
 
 
-
 
NC_009667  Oant_0352  binding-protein-dependent transport systems inner membrane component  31.44 
 
 
277 aa  126  5e-28  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2795  binding-protein-dependent transport systems inner membrane component  29.78 
 
 
298 aa  126  5e-28  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_007494  RSP_3672  ABC sugar transporter, inner membrane subunit  31.66 
 
 
277 aa  125  6e-28  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.191343  n/a   
 
 
-
 
NC_012858  Rleg_6763  binding-protein-dependent transport systems inner membrane component  31.94 
 
 
276 aa  125  6e-28  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.18605  normal 
 
 
-
 
NC_009952  Dshi_0549  ABC-type sugar / sn-glycerol-3-phosphate transport system permease protein ugpE  29.96 
 
 
272 aa  125  7e-28  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_3685  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
299 aa  125  8.000000000000001e-28  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2303  binding-protein-dependent transport systems inner membrane component  31.52 
 
 
275 aa  125  9e-28  Chelativorans sp. BNC1  Bacteria  normal  0.313337  n/a   
 
 
-
 
NC_013159  Svir_16640  ABC-type sugar transport system, permease component  29.78 
 
 
266 aa  124  1e-27  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.961926  normal 
 
 
-
 
NC_009050  Rsph17029_3407  binding-protein-dependent transport systems inner membrane component  31.27 
 
 
277 aa  125  1e-27  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.353789  normal  0.790416 
 
 
-
 
NC_009338  Mflv_3853  binding-protein-dependent transport systems inner membrane component  30.42 
 
 
275 aa  124  2e-27  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0623628 
 
 
-
 
NC_009436  Ent638_2162  binding-protein-dependent transport systems inner membrane component  29.56 
 
 
280 aa  124  2e-27  Enterobacter sp. 638  Bacteria  normal  normal  0.250115 
 
 
-
 
CP001509  ECD_01289  predicted sugar transporter subunit: membrane component of ABC superfamily  29.56 
 
 
280 aa  123  3e-27  Escherichia coli BL21(DE3)  Bacteria  normal  0.553016  n/a   
 
 
-
 
CP001637  EcDH1_2334  binding-protein-dependent transport systems inner membrane component  29.56 
 
 
280 aa  123  3e-27  Escherichia coli DH1  Bacteria  normal  0.240108  n/a   
 
 
-
 
NC_012892  B21_01300  hypothetical protein  29.56 
 
 
280 aa  123  3e-27  Escherichia coli BL21  Bacteria  normal  0.534807  n/a   
 
 
-
 
NC_013595  Sros_5740  binding-protein-dependent transport systems inner membrane component  30.3 
 
 
289 aa  124  3e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  0.872391  normal  0.176709 
 
 
-
 
NC_007802  Jann_1285  binding-protein-dependent transport systems inner membrane component  28.84 
 
 
404 aa  123  3e-27  Jannaschia sp. CCS1  Bacteria  normal  0.1795  normal  0.885594 
 
 
-
 
NC_009801  EcE24377A_1522  putative sugar ABC transporter, permease protein  29.56 
 
 
280 aa  123  3e-27  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2313  binding-protein-dependent transport systems inner membrane component  29.56 
 
 
280 aa  123  3e-27  Escherichia coli ATCC 8739  Bacteria  normal  0.676844  normal 
 
 
-
 
NC_009800  EcHS_A1427  putative sugar ABC transporter, permease protein  29.56 
 
 
280 aa  123  3e-27  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
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