141 homologs were found in PanDaTox collection
for query gene Rleg2_3057 on replicon NC_011369
Organism: Rhizobium leguminosarum bv. trifolii WSM2304



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011369  Rleg2_3057  Urease accessory protein UreD  100 
 
 
273 aa  538  9.999999999999999e-153  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.351777  normal 
 
 
-
 
NC_012850  Rleg_3313  Urease accessory protein UreD  92.67 
 
 
273 aa  486  1e-136  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_3486  urease accessory protein  61.34 
 
 
278 aa  332  6e-90  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2389  urease accessory protein UreD  62.45 
 
 
277 aa  314  9.999999999999999e-85  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.274527 
 
 
-
 
NC_008254  Meso_2680  urease accessory protein UreD  50.74 
 
 
302 aa  254  1.0000000000000001e-66  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0267  urease accessory protein UreD  48.16 
 
 
280 aa  242  3.9999999999999997e-63  Brucella suis 1330  Bacteria  normal  0.628784  n/a   
 
 
-
 
NC_009505  BOV_0281  urease accessory protein UreD  48.16 
 
 
280 aa  242  3.9999999999999997e-63  Brucella ovis ATCC 25840  Bacteria  normal  0.171639  n/a   
 
 
-
 
NC_009667  Oant_0331  urease accessory protein UreD  46.49 
 
 
283 aa  226  4e-58  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_4154  urease accessory protein UreD  46.77 
 
 
289 aa  209  3e-53  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_2214  urease accessory protein UreD  43.75 
 
 
282 aa  200  1.9999999999999998e-50  Methylobacterium sp. 4-46  Bacteria  normal  decreased coverage  0.00280053 
 
 
-
 
NC_010725  Mpop_3209  Urease accessory protein UreD  44.27 
 
 
266 aa  187  1e-46  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_2370  urease accessory protein  44.4 
 
 
281 aa  186  4e-46  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.512779 
 
 
-
 
NC_011894  Mnod_0397  Urease accessory protein UreD  41.11 
 
 
280 aa  185  5e-46  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.585213  n/a   
 
 
-
 
NC_011757  Mchl_3245  Urease accessory protein UreD  41.7 
 
 
309 aa  185  6e-46  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.53747 
 
 
-
 
NC_010172  Mext_3020  urease accessory protein UreD  42.44 
 
 
338 aa  184  2.0000000000000003e-45  Methylobacterium extorquens PA1  Bacteria  normal  0.187317  normal 
 
 
-
 
NC_009428  Rsph17025_0984  urease accessory protein UreD  45.83 
 
 
275 aa  177  1e-43  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.130155  normal 
 
 
-
 
NC_007778  RPB_1799  urease accessory protein UreD  38.02 
 
 
279 aa  176  5e-43  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.307359 
 
 
-
 
NC_007958  RPD_3505  urease accessory protein UreD  37.64 
 
 
283 aa  172  3.9999999999999995e-42  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.490284  normal 
 
 
-
 
NC_008044  TM1040_0388  urease accessory protein UreD  40.93 
 
 
297 aa  172  3.9999999999999995e-42  Ruegeria sp. TM1040  Bacteria  normal  0.784238  normal 
 
 
-
 
NC_011004  Rpal_4186  Urease accessory protein UreD  37.5 
 
 
305 aa  167  1e-40  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_1212  urease accessory protein UreD  39.27 
 
 
279 aa  163  3e-39  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_1955  urease accessory protein UreD  44.94 
 
 
275 aa  159  5e-38  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0310  urease accessory protein UreD  44.57 
 
 
275 aa  156  3e-37  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_3308  urease accessory protein UreD  42.13 
 
 
270 aa  155  9e-37  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.0886683  normal  0.364033 
 
 
-
 
NC_009485  BBta_7013  putative urease accessory protein UreD  38.4 
 
 
278 aa  152  5.9999999999999996e-36  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.796012 
 
 
-
 
NC_007925  RPC_3697  urease accessory protein UreD  39.85 
 
 
277 aa  152  7e-36  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2469  urease accessory protein UreD  37.64 
 
 
288 aa  151  1e-35  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.229131  normal 
 
 
-
 
NC_011666  Msil_2014  Urease accessory protein UreD  39.26 
 
 
282 aa  150  3e-35  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007802  Jann_1744  urease accessory protein UreD  38.62 
 
 
250 aa  148  1.0000000000000001e-34  Jannaschia sp. CCS1  Bacteria  normal  0.407934  normal  0.768182 
 
 
-
 
NC_013440  Hoch_1707  Urease accessory protein UreD  38.91 
 
 
286 aa  146  4.0000000000000006e-34  Haliangium ochraceum DSM 14365  Bacteria  normal  hitchhiker  0.00605089 
 
 
-
 
NC_008576  Mmc1_1024  urease accessory protein UreD  36.78 
 
 
289 aa  139  3.9999999999999997e-32  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.297216 
 
 
-
 
NC_007484  Noc_2883  urease accessory protein UreD  30.65 
 
 
296 aa  105  9e-22  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A1238  urease accessory protein UreD  28.21 
 
 
329 aa  102  7e-21  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_0696  urease accessory protein UreD  32.46 
 
 
278 aa  100  2e-20  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0585  urease accessory protein UreD  30.74 
 
 
279 aa  99.8  4e-20  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_1197  urease accessory protein UreD  30.5 
 
 
301 aa  98.2  1e-19  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.294974  n/a   
 
 
-
 
NC_010622  Bphy_2256  urease accessory protein UreD  34.12 
 
 
293 aa  96.3  5e-19  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_4890  urease accessory protein UreD  30.15 
 
 
281 aa  95.9  6e-19  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_4431  urease accessory protein UreD  30.52 
 
 
281 aa  94.7  1e-18  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.645112  normal 
 
 
-
 
NC_008060  Bcen_0424  urease accessory protein UreD  35.98 
 
 
291 aa  94.4  2e-18  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0903  urease accessory protein UreD  35.47 
 
 
291 aa  94.7  2e-18  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1430  urease accessory protein UreD  29.85 
 
 
288 aa  93.2  4e-18  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I1499  urease accessory protein UreD  36.68 
 
 
321 aa  93.2  5e-18  Burkholderia thailandensis E264  Bacteria  normal  0.502389  n/a   
 
 
-
 
NC_006348  BMA2181  urease accessory protein UreD  33.59 
 
 
291 aa  91.3  1e-17  Burkholderia mallei ATCC 23344  Bacteria  normal  0.670086  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0727  urease accessory protein UreD  33.59 
 
 
291 aa  91.3  1e-17  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2560  urease accessory protein UreD  33.59 
 
 
291 aa  91.3  1e-17  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3072  urease accessory protein UreD  33.59 
 
 
291 aa  91.3  1e-17  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3108  urease accessory protein UreD  33.59 
 
 
291 aa  91.3  1e-17  Burkholderia pseudomallei 1106a  Bacteria  normal  0.890859  n/a   
 
 
-
 
NC_009080  BMA10247_2053  urease accessory protein UreD  33.59 
 
 
291 aa  91.3  1e-17  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3132  UreD-family accessory protein  33.59 
 
 
346 aa  91.3  2e-17  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_2444  urease accessory protein UreD  35.59 
 
 
274 aa  90.9  2e-17  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.792758  n/a   
 
 
-
 
NC_007510  Bcep18194_A4009  urease accessory protein UreD  38.16 
 
 
291 aa  89.7  4e-17  Burkholderia sp. 383  Bacteria  normal  0.343107  normal  0.276957 
 
 
-
 
NC_012560  Avin_09910  Urease accessory protein UreD  29.2 
 
 
279 aa  89.4  6e-17  Azotobacter vinelandii DJ  Bacteria  normal  0.930917  n/a   
 
 
-
 
NC_010508  Bcenmc03_0873  urease accessory protein UreD  34.48 
 
 
291 aa  88.6  9e-17  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_3622  urease accessory protein UreD  29.13 
 
 
279 aa  88.6  1e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.768941 
 
 
-
 
NC_008390  Bamb_0782  urease accessory protein UreD  36.31 
 
 
291 aa  88.6  1e-16  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2273  Urease accessory protein UreD  28.06 
 
 
284 aa  87.8  2e-16  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_0793  urease accessory protein UreD  36.31 
 
 
291 aa  87.8  2e-16  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_2487  urease accessory protein UreD  33 
 
 
291 aa  86.7  4e-16  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007513  Syncc9902_2254  urease accessory protein D  33.52 
 
 
325 aa  85.9  6e-16  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_2718  urease accessory protein UreD  33.16 
 
 
308 aa  85.9  7e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  0.274036  normal 
 
 
-
 
NC_007516  Syncc9605_2624  urease accessory protein D  33.15 
 
 
327 aa  84.3  0.000000000000002  Synechococcus sp. CC9605  Bacteria  normal  0.829261  normal  0.578413 
 
 
-
 
NC_008820  P9303_29781  urease accessory protein UreD  29.29 
 
 
299 aa  83.2  0.000000000000004  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_009512  Pput_2847  urease accessory protein UreD  27.63 
 
 
278 aa  83.2  0.000000000000005  Pseudomonas putida F1  Bacteria  normal  0.598121  normal 
 
 
-
 
NC_007947  Mfla_1770  urease accessory protein UreD  34.23 
 
 
285 aa  82.4  0.000000000000006  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2414  urease accessory protein UreD  28.8 
 
 
277 aa  82  0.000000000000008  Pseudomonas putida W619  Bacteria  normal  0.406296  normal 
 
 
-
 
NC_010322  PputGB1_2938  urease accessory protein UreD  27.6 
 
 
277 aa  81.6  0.00000000000001  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_2188  Urease accessory protein UreD  31.32 
 
 
295 aa  81.3  0.00000000000002  Ralstonia pickettii 12J  Bacteria  normal  normal  0.125939 
 
 
-
 
NC_002947  PP_2842  urease accessory protein UreD  27.24 
 
 
277 aa  80.5  0.00000000000003  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_0181  urease accessory protein UreD  31.22 
 
 
293 aa  80.5  0.00000000000003  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.31708  normal 
 
 
-
 
NC_010681  Bphyt_0949  Urease accessory protein UreD  32.39 
 
 
293 aa  79.7  0.00000000000004  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1865  Urease accessory protein UreD  30.46 
 
 
295 aa  79.3  0.00000000000006  Ralstonia pickettii 12D  Bacteria  normal  normal  0.479381 
 
 
-
 
NC_011662  Tmz1t_3936  Urease accessory protein UreD  30.52 
 
 
292 aa  79  0.00000000000008  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc2036  urease accessory protein ureD  29.21 
 
 
295 aa  77.8  0.0000000000002  Ralstonia solanacearum GMI1000  Bacteria  normal  0.133178  normal  0.368181 
 
 
-
 
NC_007951  Bxe_A3688  putative urease accessory protein  31.76 
 
 
293 aa  77.4  0.0000000000002  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.139672 
 
 
-
 
NC_013411  GYMC61_2767  Urease accessory protein UreD  25.83 
 
 
271 aa  77  0.0000000000003  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007973  Rmet_0957  urease accessory protein UreD  27.09 
 
 
293 aa  76.6  0.0000000000004  Cupriavidus metallidurans CH34  Bacteria  normal  0.0865404  normal  0.0764365 
 
 
-
 
NC_007347  Reut_A0991  urease accessory protein UreD  29.52 
 
 
289 aa  75.1  0.000000000001  Ralstonia eutropha JMP134  Bacteria  normal  0.271998  n/a   
 
 
-
 
NC_009436  Ent638_3463  urease accessory protein UreD  22.84 
 
 
274 aa  75.1  0.000000000001  Enterobacter sp. 638  Bacteria  hitchhiker  0.00000478315  normal  0.195729 
 
 
-
 
NC_011901  Tgr7_3101  Urease accessory protein UreD  29.21 
 
 
277 aa  73.9  0.000000000003  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.877297  n/a   
 
 
-
 
NC_008463  PA14_64335  urease accessory protein  27.42 
 
 
280 aa  73.6  0.000000000004  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.164957  normal 
 
 
-
 
NC_009656  PSPA7_5585  urease accessory protein  27.42 
 
 
280 aa  73.6  0.000000000004  Pseudomonas aeruginosa PA7  Bacteria  normal  0.244983  n/a   
 
 
-
 
NC_008781  Pnap_1004  urease accessory protein UreD  28.46 
 
 
276 aa  73.2  0.000000000005  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3376  urease accessory protein UreD  31.43 
 
 
276 aa  72.4  0.000000000007  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1812  urease accessory protein UreD  27.93 
 
 
262 aa  72  0.00000000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_009091  P9301_08901  urease accessory protein UreD  30.2 
 
 
300 aa  71.6  0.00000000001  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  0.697976  n/a   
 
 
-
 
NC_007969  Pcryo_0879  urease accessory protein UreD  28.66 
 
 
302 aa  70.1  0.00000000003  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2062  Urease accessory protein UreD  30.57 
 
 
315 aa  70.1  0.00000000003  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000769283  n/a   
 
 
-
 
NC_008752  Aave_1082  urease accessory protein UreD  30.72 
 
 
276 aa  69.7  0.00000000005  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1463  Urease accessory protein UreD  29.15 
 
 
311 aa  69.3  0.00000000007  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1301  urease accessory protein UreD  29.15 
 
 
311 aa  69.3  0.00000000007  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007577  PMT9312_0833  urease accessory protein UreD  29.17 
 
 
300 aa  68.6  0.0000000001  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
NC_008816  A9601_08921  urease accessory protein UreD  24.59 
 
 
300 aa  68.6  0.0000000001  Prochlorococcus marinus str. AS9601  Bacteria  decreased coverage  0.00733999  n/a   
 
 
-
 
NC_008786  Veis_1390  urease accessory protein UreD  24.33 
 
 
276 aa  68.2  0.0000000002  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.469833  normal 
 
 
-
 
NC_007963  Csal_2308  urease accessory protein UreD  28.34 
 
 
313 aa  67.4  0.0000000003  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008532  STER_0329  urease accessory protein  23.18 
 
 
279 aa  67.4  0.0000000003  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_5120  Urease accessory protein UreD  28.46 
 
 
311 aa  66.6  0.0000000004  Methylobacterium populi BJ001  Bacteria  normal  normal  0.827882 
 
 
-
 
NC_012791  Vapar_3971  Urease accessory protein UreD  29.29 
 
 
276 aa  66.2  0.0000000005  Variovorax paradoxus S110  Bacteria  normal  0.853701  n/a   
 
 
-
 
NC_007335  PMN2A_1052  urease accessory protein UreD  26.81 
 
 
307 aa  65.1  0.000000001  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0953  urease accessory protein UreD  27.5 
 
 
312 aa  65.1  0.000000001  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
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