8 homologs were found in PanDaTox collection
for query gene Rfer_3837 on replicon NC_007908
Organism: Rhodoferax ferrireducens T118



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007908  Rfer_3837  hypothetical protein  100 
 
 
453 aa  906    Rhodoferax ferrireducens T118  Bacteria  normal  0.714122  n/a   
 
 
-
 
NC_008228  Patl_2757  hypothetical protein  32 
 
 
623 aa  158  2e-37  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.0366387  n/a   
 
 
-
 
NC_013132  Cpin_1738  PKD domain containing protein  29.49 
 
 
2972 aa  83.6  0.000000000000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2196  PKD domain containing protein  30.86 
 
 
1389 aa  63.5  0.000000008  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.00127205  decreased coverage  0.00000000000751433 
 
 
-
 
NC_013061  Phep_1530  PKD domain containing protein  25.84 
 
 
1162 aa  60.8  0.00000005  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.975674 
 
 
-
 
NC_008255  CHU_1799  hypothetical protein  28.85 
 
 
742 aa  60.5  0.00000006  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.541739  normal 
 
 
-
 
NC_013132  Cpin_1739  PKD domain containing protein  25.25 
 
 
1371 aa  55.5  0.000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.665566  normal 
 
 
-
 
NC_013132  Cpin_2195  PKD domain containing protein  29.09 
 
 
2980 aa  55.5  0.000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  hitchhiker  0.00000175311 
 
 
-
 
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