17 homologs were found in PanDaTox collection
for query gene Rfer_0033 on replicon NC_007908
Organism: Rhodoferax ferrireducens T118



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007908  Rfer_0033  hypothetical protein  100 
 
 
91 aa  191  3e-48  Rhodoferax ferrireducens T118  Bacteria  normal  0.520432  n/a   
 
 
-
 
NC_011901  Tgr7_0622  type I restriction modification system, restriction subunit  66.67 
 
 
140 aa  79  0.00000000000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3512  type III restriction protein res subunit  45.71 
 
 
924 aa  62  0.000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0087  type III restriction enzyme, res subunit  48.39 
 
 
925 aa  61.2  0.000000004  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.517588  n/a   
 
 
-
 
NC_008146  Mmcs_3779  type III restriction enzyme, res subunit  48.39 
 
 
803 aa  61.2  0.000000004  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3852  type III restriction enzyme, res subunit  48.39 
 
 
803 aa  61.2  0.000000004  Mycobacterium sp. KMS  Bacteria  normal  0.345387  normal  0.793201 
 
 
-
 
NC_009338  Mflv_2408  type III restriction enzyme, res subunit  46.77 
 
 
907 aa  57  0.00000008  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0853  type III restriction enzyme, res subunit  47.54 
 
 
921 aa  55.5  0.0000003  Desulfovibrio vulgaris DP4  Bacteria  normal  0.237382  normal  0.0361479 
 
 
-
 
NC_007955  Mbur_0509  type III restriction enzyme, res subunit  40.98 
 
 
918 aa  52.8  0.000002  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_002967  TDE2747  type I restriction-modification system, R subunit  50 
 
 
934 aa  51.6  0.000004  Treponema denticola ATCC 35405  Bacteria  normal  0.504328  n/a   
 
 
-
 
NC_007355  Mbar_A3274  type I site-specific deoxyribonuclease  42.62 
 
 
917 aa  50.1  0.00001  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal  0.3318 
 
 
-
 
NC_007484  Noc_1205  hypothetical protein  35.23 
 
 
919 aa  47  0.0001  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.326173  n/a   
 
 
-
 
NC_008340  Mlg_1126  hypothetical protein  48.84 
 
 
69 aa  45.8  0.0002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.851712 
 
 
-
 
NC_008639  Cpha266_1495  type III restriction enzyme, res subunit  37.7 
 
 
931 aa  43.5  0.001  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0831  hypothetical protein  57.58 
 
 
35 aa  42.4  0.002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.0782191  normal  0.438318 
 
 
-
 
NC_011761  AFE_0682  hypothetical protein  57.58 
 
 
35 aa  42.4  0.002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0605  type I restriction modification system, restriction subunit  58.33 
 
 
44 aa  40.4  0.009  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.366326  n/a   
 
 
-
 
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