More than 300 homologs were found in PanDaTox collection
for query gene Rcas_3669 on replicon NC_009767
Organism: Roseiflexus castenholzii DSM 13941



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009767  Rcas_3669  response regulator receiver protein  100 
 
 
127 aa  251  2.0000000000000002e-66  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_4041  response regulator receiver protein  96.06 
 
 
127 aa  243  6e-64  Roseiflexus sp. RS-1  Bacteria  normal  0.557093  normal 
 
 
-
 
NC_011831  Cagg_3065  response regulator receiver protein  86.61 
 
 
128 aa  225  2e-58  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.735156  hitchhiker  0.0000890784 
 
 
-
 
NC_009972  Haur_3092  response regulator receiver protein  65.57 
 
 
128 aa  171  2.9999999999999996e-42  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0109887  n/a   
 
 
-
 
NC_009767  Rcas_0993  response regulator receiver protein  39.13 
 
 
127 aa  86.7  1e-16  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.250481  normal 
 
 
-
 
NC_002977  MCA3100  response regulator  40.68 
 
 
122 aa  83.2  0.000000000000001  Methylococcus capsulatus str. Bath  Bacteria  normal  0.182729  n/a   
 
 
-
 
NC_011831  Cagg_2396  response regulator receiver protein  34.45 
 
 
126 aa  82.8  0.000000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.612966  normal  0.464694 
 
 
-
 
NC_009767  Rcas_1967  response regulator receiver protein  37.93 
 
 
141 aa  80.9  0.000000000000006  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0246648  normal 
 
 
-
 
NC_009523  RoseRS_3814  response regulator receiver protein  36.52 
 
 
127 aa  80.5  0.000000000000008  Roseiflexus sp. RS-1  Bacteria  normal  0.466742  normal  0.446242 
 
 
-
 
NC_002947  PP_2942  response regulator  39.68 
 
 
456 aa  79.3  0.00000000000002  Pseudomonas putida KT2440  Bacteria  normal  0.714666  normal  0.271158 
 
 
-
 
NC_009512  Pput_2745  response regulator receiver protein  39.5 
 
 
456 aa  78.2  0.00000000000004  Pseudomonas putida F1  Bacteria  normal  0.862781  normal 
 
 
-
 
NC_009523  RoseRS_0338  response regulator receiver modulated metal dependent phosphohydrolase  38.6 
 
 
513 aa  77.4  0.00000000000006  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.102838 
 
 
-
 
NC_009767  Rcas_1114  response regulator receiver modulated serine phosphatase  37.72 
 
 
391 aa  77  0.00000000000007  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_0150  response regulator receiver protein  36 
 
 
141 aa  75.9  0.0000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0560518  normal  0.0737587 
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  33.61 
 
 
454 aa  75.5  0.0000000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_3026  signal transduction histidine kinase, nitrogen specific, NtrB  35.66 
 
 
819 aa  75.5  0.0000000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.956622  normal 
 
 
-
 
NC_009675  Anae109_4257  two component, sigma54 specific, Fis family transcriptional regulator  42.45 
 
 
463 aa  75.9  0.0000000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_2709  response regulator receiver sensor signal transduction histidine kinase  39.22 
 
 
501 aa  75.1  0.0000000000003  Desulfovibrio vulgaris DP4  Bacteria  normal  0.710197  normal  0.745824 
 
 
-
 
NC_007947  Mfla_0911  two component, sigma54 specific, Fis family transcriptional regulator  39.66 
 
 
456 aa  74.7  0.0000000000004  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1055  two component, sigma54 specific, Fis family transcriptional regulator  39.66 
 
 
456 aa  74.7  0.0000000000004  Methylobacillus flagellatus KT  Bacteria  normal  0.523432  normal 
 
 
-
 
NC_011769  DvMF_2107  response regulator receiver protein  36.97 
 
 
768 aa  72.8  0.000000000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011769  DvMF_1260  two component, sigma54 specific, transcriptional regulator, Fis family  38.53 
 
 
452 aa  72  0.000000000003  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    hitchhiker  0.0000000000141339 
 
 
-
 
NC_013173  Dbac_2668  response regulator receiver protein  33.87 
 
 
675 aa  72  0.000000000003  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1041  signal transduction histidine kinase, nitrogen specific, NtrB  32.23 
 
 
1121 aa  72  0.000000000003  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.700011  n/a   
 
 
-
 
NC_009675  Anae109_1530  response regulator receiver protein  36.21 
 
 
127 aa  72  0.000000000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.754323  normal 
 
 
-
 
NC_011145  AnaeK_0313  two component, sigma54 specific, transcriptional regulator, Fis family  40.57 
 
 
465 aa  71.2  0.000000000004  Anaeromyxobacter sp. K  Bacteria  normal  0.0494225  n/a   
 
 
-
 
NC_009523  RoseRS_2709  response regulator receiver protein  34.43 
 
 
135 aa  71.2  0.000000000004  Roseiflexus sp. RS-1  Bacteria  normal  0.755164  normal 
 
 
-
 
NC_011891  A2cp1_0324  two component, sigma54 specific, transcriptional regulator, Fis family  36.28 
 
 
465 aa  71.2  0.000000000004  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.266606  n/a   
 
 
-
 
NC_008554  Sfum_3765  two component, sigma54 specific, Fis family transcriptional regulator  40.37 
 
 
463 aa  71.2  0.000000000004  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.000821276  normal 
 
 
-
 
NC_007517  Gmet_2679  response regulator receiver domain-containing protein  32.48 
 
 
129 aa  70.5  0.000000000007  Geobacter metallireducens GS-15  Bacteria  normal  0.380915  normal  0.27601 
 
 
-
 
NC_008609  Ppro_0435  response regulator receiver protein  34.19 
 
 
124 aa  70.5  0.000000000007  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00876892  n/a   
 
 
-
 
NC_010571  Oter_1914  PAS/PAC sensor hybrid histidine kinase  30.58 
 
 
815 aa  70.5  0.000000000008  Opitutus terrae PB90-1  Bacteria  normal  0.979442  normal 
 
 
-
 
NC_002939  GSU1117  response regulator  33.05 
 
 
127 aa  70.1  0.000000000009  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1320  sigma-54 dependent DNA-binding response regulator  38.02 
 
 
460 aa  70.1  0.000000000009  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0198  two component, sigma54 specific, transcriptional regulator, Fis family  33.62 
 
 
461 aa  70.1  0.000000000009  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0845  response regulator receiver modulated metal dependent phosphohydrolase  35.29 
 
 
508 aa  69.7  0.00000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.903712  hitchhiker  0.00198769 
 
 
-
 
NC_009483  Gura_0009  multi-sensor signal transduction histidine kinase  35.4 
 
 
508 aa  69.7  0.00000000001  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_6827  response regulator receiver protein  34.26 
 
 
389 aa  69.7  0.00000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_2406  response regulator receiver domain-containing protein  32.76 
 
 
124 aa  70.1  0.00000000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2738  response regulator receiver domain-containing protein  35.45 
 
 
194 aa  70.1  0.00000000001  Rhodoferax ferrireducens T118  Bacteria  hitchhiker  0.000186206  n/a   
 
 
-
 
NC_013739  Cwoe_1190  response regulator receiver modulated FAD- dependent pyridine nucleotide-disulphide oxidoreductase  37.78 
 
 
560 aa  69.3  0.00000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.716725  unclonable  0.0000120152 
 
 
-
 
NC_013037  Dfer_1604  two component transcriptional regulator, AraC family  34.43 
 
 
904 aa  69.3  0.00000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2553  response regulator receiver protein  33.33 
 
 
126 aa  68.9  0.00000000002  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.1194499999999997e-20 
 
 
-
 
NC_010814  Glov_1657  two component, sigma54 specific, transcriptional regulator, Fis family  39.17 
 
 
456 aa  69.3  0.00000000002  Geobacter lovleyi SZ  Bacteria  normal  0.0365007  n/a   
 
 
-
 
NC_007348  Reut_B4471  PAS/PAC sensor hybrid histidine kinase  35.04 
 
 
678 aa  69.3  0.00000000002  Ralstonia eutropha JMP134  Bacteria  hitchhiker  0.00885051  n/a   
 
 
-
 
NC_007492  Pfl01_4550  response regulator receiver domain-containing protein  37.39 
 
 
451 aa  69.3  0.00000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.01769  normal 
 
 
-
 
NC_009767  Rcas_2148  multi-sensor hybrid histidine kinase  35.83 
 
 
819 aa  68.9  0.00000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.233006  hitchhiker  0.00949178 
 
 
-
 
NC_011831  Cagg_2013  multi-sensor hybrid histidine kinase  33.33 
 
 
801 aa  68.9  0.00000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_010512  Bcenmc03_6441  response regulator receiver modulated metal dependent phosphohydrolase  38.89 
 
 
470 aa  69.3  0.00000000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_1450  two component, sigma54 specific, Fis family transcriptional regulator  40.74 
 
 
448 aa  69.3  0.00000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0846  response regulator receiver protein  35.4 
 
 
139 aa  68.9  0.00000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  hitchhiker  0.00282438 
 
 
-
 
NC_011145  AnaeK_2412  two component, sigma54 specific, transcriptional regulator, Fis family  40.74 
 
 
448 aa  69.3  0.00000000002  Anaeromyxobacter sp. K  Bacteria  normal  0.408341  n/a   
 
 
-
 
NC_011146  Gbem_1660  response regulator receiver protein  33.33 
 
 
126 aa  68.9  0.00000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2499  two component, sigma54 specific, transcriptional regulator, Fis family  40.74 
 
 
448 aa  69.3  0.00000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0553938  n/a   
 
 
-
 
NC_007509  Bcep18194_C7223  response regulator receiver modulated metal dependent phosphohydrolase  37.74 
 
 
473 aa  68.2  0.00000000003  Burkholderia sp. 383  Bacteria  normal  0.58817  normal  0.218696 
 
 
-
 
NC_010814  Glov_1568  response regulator receiver protein  32.2 
 
 
262 aa  68.6  0.00000000003  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I0615  response regulator  40.57 
 
 
484 aa  68.6  0.00000000003  Burkholderia thailandensis E264  Bacteria  normal  0.177724  n/a   
 
 
-
 
NC_012912  Dd1591_3018  hybrid sensory kinase in two-component regulatory system with RcsB and YojN  36.61 
 
 
955 aa  68.6  0.00000000003  Dickeya zeae Ech1591  Bacteria  normal  0.0433784  n/a   
 
 
-
 
NC_010814  Glov_3603  response regulator receiver protein  34.82 
 
 
131 aa  68.6  0.00000000003  Geobacter lovleyi SZ  Bacteria  normal  0.656399  n/a   
 
 
-
 
NC_009674  Bcer98_3857  response regulator receiver protein  29.91 
 
 
122 aa  68.6  0.00000000003  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.161717  n/a   
 
 
-
 
NC_002939  GSU2693  response regulator  34.51 
 
 
128 aa  68.2  0.00000000004  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1973  response regulator receiver protein  34.43 
 
 
127 aa  68.2  0.00000000004  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.00115006  hitchhiker  0.0000141072 
 
 
-
 
NC_007760  Adeh_0302  two component, sigma54 specific, Fis family transcriptional regulator  35.96 
 
 
465 aa  67.8  0.00000000004  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3740  two component, sigma-54 specific, Fis family transcriptional regulator  34.48 
 
 
454 aa  68.2  0.00000000004  Geobacter uraniireducens Rf4  Bacteria  normal  0.0840186  n/a   
 
 
-
 
NC_008062  Bcen_5575  response regulator receiver modulated metal dependent phosphohydrolase  37.96 
 
 
472 aa  68.2  0.00000000004  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_5939  response regulator receiver modulated metal dependent phosphohydrolase  37.96 
 
 
472 aa  68.2  0.00000000004  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.862183 
 
 
-
 
NC_009523  RoseRS_0337  response regulator receiver protein  35.71 
 
 
139 aa  67.8  0.00000000004  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0132867 
 
 
-
 
NC_009080  BMA10247_2469  response regulator  39.5 
 
 
481 aa  67.8  0.00000000005  Burkholderia mallei NCTC 10247  Bacteria  normal  0.129941  n/a   
 
 
-
 
NC_009076  BURPS1106A_0757  response regulator/HD domain-containing protein  39.5 
 
 
481 aa  67.8  0.00000000005  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_4008  response regulator receiver  31.67 
 
 
1374 aa  67.8  0.00000000005  Pedobacter heparinus DSM 2366  Bacteria  normal  0.702059  normal 
 
 
-
 
NC_008785  BMASAVP1_A2689  response regulator  39.5 
 
 
481 aa  67.8  0.00000000005  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_0114  Signal transduction histidine kinase  35.59 
 
 
939 aa  67.8  0.00000000005  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.153209 
 
 
-
 
NC_007434  BURPS1710b_0923  response regulator  39.5 
 
 
481 aa  67.8  0.00000000005  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1977  response regulator receiver protein  34.48 
 
 
265 aa  67.8  0.00000000005  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2820  multi-sensor hybrid histidine kinase / cell cycle control histidine kinase CckA  34.75 
 
 
829 aa  67.8  0.00000000005  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_1267  response regulator receiver sensor signal transduction histidine kinase  32.5 
 
 
542 aa  67.8  0.00000000005  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_0252  response regulator receiver protein  30.83 
 
 
239 aa  67.8  0.00000000005  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.114255 
 
 
-
 
NC_008836  BMA10229_A2388  response regulator  39.5 
 
 
481 aa  67.8  0.00000000005  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_1426  response regulator receiver protein  33.93 
 
 
118 aa  67.8  0.00000000005  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1854  histidine kinase  38.94 
 
 
1111 aa  67.4  0.00000000006  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.131557  normal 
 
 
-
 
NC_007298  Daro_0040  PAS/PAC sensor hybrid histidine kinase  38.46 
 
 
1193 aa  67.4  0.00000000006  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.802864 
 
 
-
 
NC_009523  RoseRS_3770  response regulator receiver protein  33.33 
 
 
391 aa  67.4  0.00000000006  Roseiflexus sp. RS-1  Bacteria  normal  unclonable  0.0000112062 
 
 
-
 
NC_010184  BcerKBAB4_5134  response regulator receiver protein  29.91 
 
 
122 aa  67.4  0.00000000006  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0135031  n/a   
 
 
-
 
NC_008751  Dvul_0092  response regulator receiver protein  35.04 
 
 
682 aa  67.4  0.00000000006  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_0318  two component, sigma54 specific, transcriptional regulator, Fis family  37.61 
 
 
444 aa  67.4  0.00000000007  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.623728  n/a   
 
 
-
 
NC_009457  VC0395_A0606  response regulator  35.4 
 
 
447 aa  67.4  0.00000000007  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2934  response regulator receiver protein  32.76 
 
 
129 aa  67.4  0.00000000007  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000852899  n/a   
 
 
-
 
NC_013216  Dtox_0055  response regulator receiver protein  31.62 
 
 
133 aa  67.4  0.00000000007  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.0166098  hitchhiker  0.000805427 
 
 
-
 
NC_008554  Sfum_0621  two component, sigma54 specific, Fis family transcriptional regulator  34.48 
 
 
472 aa  67  0.00000000007  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0298  sigma-54 dependent DNA-binding response regulator, interruption-C  38.89 
 
 
332 aa  67  0.00000000008  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0673  two component, sigma54 specific, transcriptional regulator, Fis family  36.44 
 
 
457 aa  67  0.00000000008  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2017  response regulator CheY  33.33 
 
 
129 aa  67  0.00000000008  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0673  two component, sigma54 specific, transcriptional regulator, Fis family  36.44 
 
 
458 aa  67  0.00000000009  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_2550  multi-sensor signal transduction histidine kinase  33.62 
 
 
685 aa  66.2  0.0000000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_010465  YPK_2844  hybrid sensory kinase in two-component regulatory system with RcsB and YojN  35.09 
 
 
957 aa  66.2  0.0000000001  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.436473  n/a   
 
 
-
 
NC_009485  BBta_5491  cell cycle control histidine kinase CckA  31.93 
 
 
892 aa  66.2  0.0000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.606378  normal 
 
 
-
 
NC_009943  Dole_1649  two component, sigma54 specific, Fis family transcriptional regulator  34.19 
 
 
479 aa  66.2  0.0000000001  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_0891  response regulator receiver domain-containing protein  33.33 
 
 
137 aa  66.6  0.0000000001  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_3263  two component, sigma54 specific, Fis family transcriptional regulator  37.78 
 
 
464 aa  66.6  0.0000000001  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00000000257125 
 
 
-
 
NC_011830  Dhaf_4841  response regulator receiver protein  32.48 
 
 
118 aa  66.6  0.0000000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.202718  n/a   
 
 
-
 
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