More than 300 homologs were found in PanDaTox collection
for query gene RSc3201 on replicon NC_003295
Organism: Ralstonia solanacearum GMI1000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_003295  RSc3201  oxidoreductase protein  100 
 
 
179 aa  369  1e-101  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.0457415 
 
 
-
 
NC_007794  Saro_1811  short-chain dehydrogenase/reductase SDR  43.33 
 
 
240 aa  124  6e-28  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.300255  n/a   
 
 
-
 
NC_013132  Cpin_2130  short-chain dehydrogenase/reductase SDR  40.66 
 
 
242 aa  124  8.000000000000001e-28  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_2654  short-chain dehydrogenase/reductase SDR  44.3 
 
 
241 aa  123  1e-27  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_4882  short-chain dehydrogenase/reductase SDR  41.98 
 
 
247 aa  123  2e-27  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.938804 
 
 
-
 
NC_011368  Rleg2_5163  short-chain dehydrogenase/reductase SDR  45.96 
 
 
249 aa  122  3e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.898611  normal  0.512081 
 
 
-
 
NC_009441  Fjoh_4279  short-chain dehydrogenase/reductase SDR  48.78 
 
 
241 aa  120  9.999999999999999e-27  Flavobacterium johnsoniae UW101  Bacteria  normal  0.57822  n/a   
 
 
-
 
NC_011679  PHATR_46707  predicted protein  34.83 
 
 
260 aa  119  3e-26  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  0.125621  n/a   
 
 
-
 
NC_010581  Bind_1016  short-chain dehydrogenase/reductase SDR  40.88 
 
 
257 aa  118  3.9999999999999996e-26  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.125705  normal 
 
 
-
 
NC_012912  Dd1591_3581  short-chain dehydrogenase/reductase SDR  43.59 
 
 
250 aa  117  9.999999999999999e-26  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_2005  short-chain dehydrogenase/reductase SDR  38.65 
 
 
264 aa  114  6e-25  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_1081  short-chain dehydrogenase/reductase SDR  38.93 
 
 
250 aa  112  4.0000000000000004e-24  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1691  Short-chain dehydrogenase/reductase SDR  40.52 
 
 
256 aa  110  1.0000000000000001e-23  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_2495  short-chain dehydrogenase/reductase SDR  43.67 
 
 
251 aa  110  2.0000000000000002e-23  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_2715  Short-chain dehydrogenase/reductase SDR  42.58 
 
 
254 aa  108  3e-23  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.479047 
 
 
-
 
NC_013205  Aaci_2912  short-chain dehydrogenase/reductase SDR  38.3 
 
 
253 aa  107  1e-22  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  hitchhiker  0.00176111  n/a   
 
 
-
 
NC_007492  Pfl01_2769  Short-chain dehydrogenase/reductase SDR  47.11 
 
 
252 aa  105  3e-22  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1582  oxidoreductase, short-chain dehydrogenase/reductase family  35.62 
 
 
253 aa  105  4e-22  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.518044  n/a   
 
 
-
 
NC_013132  Cpin_6716  short-chain dehydrogenase/reductase SDR  36.9 
 
 
247 aa  104  6e-22  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_3459  short-chain dehydrogenase/reductase SDR  40.26 
 
 
247 aa  104  6e-22  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_2855  short-chain dehydrogenase/reductase SDR  39.64 
 
 
253 aa  104  8e-22  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.243051  normal  0.0981468 
 
 
-
 
NC_010676  Bphyt_4099  short-chain dehydrogenase/reductase SDR  40.85 
 
 
248 aa  104  8e-22  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_1647  short-chain dehydrogenase/reductase SDR  38.96 
 
 
252 aa  103  1e-21  Variovorax paradoxus S110  Bacteria  normal  0.140341  n/a   
 
 
-
 
NC_004578  PSPTO_4065  oxidoreductase, short-chain dehydrogenase/reductase family  46.28 
 
 
252 aa  103  1e-21  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.372477  n/a   
 
 
-
 
NC_013132  Cpin_4321  short-chain dehydrogenase/reductase SDR  45.22 
 
 
260 aa  103  1e-21  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.488757  normal  0.0305569 
 
 
-
 
NC_012912  Dd1591_2458  short-chain dehydrogenase/reductase SDR  45.22 
 
 
251 aa  103  1e-21  Dickeya zeae Ech1591  Bacteria  normal  0.315729  n/a   
 
 
-
 
BN001305  ANIA_05556  conserved hypothetical protein  39.64 
 
 
266 aa  103  2e-21  Aspergillus nidulans FGSC A4  Eukaryota  normal  normal 
 
 
-
 
NC_013421  Pecwa_3205  short-chain dehydrogenase/reductase SDR  42.86 
 
 
253 aa  101  5e-21  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010510  Mrad2831_5866  short-chain dehydrogenase/reductase SDR  45.31 
 
 
256 aa  99.8  2e-20  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.117974  normal  0.033856 
 
 
-
 
NC_013132  Cpin_6680  short-chain dehydrogenase/reductase SDR  34.15 
 
 
258 aa  98.6  4e-20  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_2956  short-chain dehydrogenase/reductase SDR  37.01 
 
 
252 aa  98.2  6e-20  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.717982 
 
 
-
 
BN001302  ANIA_10469  oxidoreductase, short-chain dehydrogenase/reductase family (AFU_orthologue; AFUA_1G01330)  35.76 
 
 
264 aa  97.8  7e-20  Aspergillus nidulans FGSC A4  Eukaryota  normal  0.331607  normal 
 
 
-
 
NC_008255  CHU_2258  oxidoreductase  35.26 
 
 
244 aa  97.8  7e-20  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.188796  normal 
 
 
-
 
NC_008009  Acid345_4583  short-chain dehydrogenase/reductase SDR  37.36 
 
 
264 aa  97.4  9e-20  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.427609  normal 
 
 
-
 
NC_007802  Jann_3548  short-chain dehydrogenase/reductase SDR  32.75 
 
 
278 aa  97.1  1e-19  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_4345  short-chain dehydrogenase/reductase SDR  37.89 
 
 
253 aa  95.5  3e-19  Burkholderia phytofirmans PsJN  Bacteria  normal  0.120533  normal 
 
 
-
 
NC_011894  Mnod_2222  short-chain dehydrogenase/reductase SDR  42.19 
 
 
256 aa  95.1  5e-19  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.434402  n/a   
 
 
-
 
NC_013132  Cpin_2065  short-chain dehydrogenase/reductase SDR  34.13 
 
 
248 aa  93.6  1e-18  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A1732  putative short-chain dehydrogenase/reductase SDR  30.73 
 
 
257 aa  92.8  2e-18  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5083  short-chain dehydrogenase/reductase SDR  39.5 
 
 
250 aa  93.2  2e-18  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.130584  normal 
 
 
-
 
NC_008061  Bcen_3162  short-chain dehydrogenase/reductase SDR  37.75 
 
 
252 aa  92  4e-18  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_5071  short-chain dehydrogenase/reductase SDR  37.75 
 
 
252 aa  92  4e-18  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_5206  short-chain dehydrogenase/reductase SDR  37.75 
 
 
252 aa  92  4e-18  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.0231345 
 
 
-
 
NC_008528  OEOE_0044  D-alanine transfer protein, short-chain dehydrogenase  32.74 
 
 
263 aa  89.4  3e-17  Oenococcus oeni PSU-1  Bacteria  normal  0.170136  n/a   
 
 
-
 
NC_013521  Sked_16840  short-chain dehydrogenase, teichoic and lipoteichoic acid D-alanine esterification  38.46 
 
 
256 aa  87  1e-16  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.0203884 
 
 
-
 
NC_013730  Slin_3678  short-chain dehydrogenase/reductase SDR  33.73 
 
 
241 aa  85.9  3e-16  Spirosoma linguale DSM 74  Bacteria  normal  0.200672  normal  0.523007 
 
 
-
 
NC_013061  Phep_2442  short-chain dehydrogenase/reductase SDR  36.77 
 
 
262 aa  83.6  0.000000000000001  Pedobacter heparinus DSM 2366  Bacteria  normal  0.191582  normal 
 
 
-
 
NC_013730  Slin_2448  short-chain dehydrogenase/reductase SDR  30.3 
 
 
257 aa  81.3  0.000000000000006  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_3329  short-chain dehydrogenase/reductase SDR  33.75 
 
 
256 aa  80.9  0.000000000000009  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.227726  hitchhiker  0.00265893 
 
 
-
 
NC_013132  Cpin_5005  short-chain dehydrogenase/reductase SDR  36.78 
 
 
246 aa  80.5  0.00000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.277781  normal  0.0166501 
 
 
-
 
NC_009727  CBUD_1145  short chain dehydrogenase  32.12 
 
 
321 aa  79.7  0.00000000000002  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1015  short chain dehydrogenase/reductase family oxidoreductase  32.12 
 
 
263 aa  79  0.00000000000003  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3794  short-chain dehydrogenase/reductase SDR  30.49 
 
 
262 aa  78.6  0.00000000000004  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP2049  short chain dehydrogenase/reductase family oxidoreductase  35.45 
 
 
230 aa  77.4  0.0000000000001  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_5627  short-chain dehydrogenase/reductase SDR  32.37 
 
 
282 aa  76.6  0.0000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.193827 
 
 
-
 
NC_009715  CCV52592_1418  short chain dehydrogenase/reductase family oxidoreductase  31.4 
 
 
248 aa  76.3  0.0000000000002  Campylobacter curvus 525.92  Bacteria  hitchhiker  0.0000653973  n/a   
 
 
-
 
NC_003912  CJE0920  short chain dehydrogenase/reductase family oxidoreductase  30.83 
 
 
249 aa  75.9  0.0000000000003  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_1181  short chain dehydrogenase/reductase family oxidoreductase  30.83 
 
 
249 aa  76.3  0.0000000000003  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_2396  short-chain dehydrogenase/reductase SDR  29.31 
 
 
321 aa  75.5  0.0000000000004  Salinispora tropica CNB-440  Bacteria  normal  0.13478  normal 
 
 
-
 
NC_008787  CJJ81176_0850  short chain dehydrogenase/reductase family oxidoreductase  30 
 
 
249 aa  75.1  0.0000000000004  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_0764  short-chain dehydrogenase/reductase SDR  35.45 
 
 
270 aa  74.7  0.0000000000007  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.4598  n/a   
 
 
-
 
NC_010086  Bmul_5043  short-chain dehydrogenase/reductase SDR  31.98 
 
 
300 aa  74.3  0.0000000000008  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.680577 
 
 
-
 
NC_007348  Reut_B5157  Short-chain dehydrogenase/reductase SDR  29.1 
 
 
271 aa  73.9  0.000000000001  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_0951  short chain dehydrogenase  30.18 
 
 
268 aa  73.6  0.000000000001  Psychromonas ingrahamii 37  Bacteria  normal  0.333261  normal 
 
 
-
 
NC_013947  Snas_5541  short-chain dehydrogenase/reductase SDR  37.93 
 
 
254 aa  73.2  0.000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.260797 
 
 
-
 
NC_010552  BamMC406_3569  short-chain dehydrogenase/reductase SDR  32.78 
 
 
308 aa  73.2  0.000000000002  Burkholderia ambifaria MC40-6  Bacteria  normal  0.683076  hitchhiker  0.00146118 
 
 
-
 
NC_010511  M446_3686  short-chain dehydrogenase/reductase SDR  29.34 
 
 
273 aa  73.6  0.000000000002  Methylobacterium sp. 4-46  Bacteria  normal  hitchhiker  0.00031135 
 
 
-
 
NC_008061  Bcen_4697  short-chain dehydrogenase/reductase SDR  31.67 
 
 
300 aa  72.8  0.000000000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.858083  n/a   
 
 
-
 
NC_008543  Bcen2424_3665  short-chain dehydrogenase/reductase SDR  31.67 
 
 
300 aa  72.8  0.000000000002  Burkholderia cenocepacia HI2424  Bacteria  normal  0.196954  normal 
 
 
-
 
NC_010515  Bcenmc03_3856  short-chain dehydrogenase/reductase SDR  31.67 
 
 
300 aa  72.8  0.000000000003  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.514987 
 
 
-
 
NC_010655  Amuc_0363  short-chain dehydrogenase/reductase SDR  33.57 
 
 
281 aa  72  0.000000000004  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_5413  short-chain dehydrogenase/reductase SDR  32.78 
 
 
308 aa  72  0.000000000004  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B2443  Short-chain dehydrogenase/reductase SDR  32.22 
 
 
300 aa  71.6  0.000000000005  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008527  LACR_0143  Short-chain dehydrogenase (D-alanine transfer protein)  32.39 
 
 
261 aa  71.6  0.000000000005  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_3131  short-chain dehydrogenase/reductase SDR  32.31 
 
 
258 aa  71.6  0.000000000006  Pedobacter heparinus DSM 2366  Bacteria  normal  0.859893  normal 
 
 
-
 
NC_009456  VC0395_0137  short chain dehydrogenase  30.06 
 
 
265 aa  71.6  0.000000000006  Vibrio cholerae O395  Bacteria  normal  0.122699  n/a   
 
 
-
 
NC_009565  TBFG_12242  short chain dehydrogenase  32.5 
 
 
592 aa  71.2  0.000000000007  Mycobacterium tuberculosis F11  Bacteria  normal  0.0208017  normal  0.29752 
 
 
-
 
NC_009953  Sare_2544  short-chain dehydrogenase/reductase SDR  30.36 
 
 
313 aa  70.9  0.000000000008  Salinispora arenicola CNS-205  Bacteria  normal  0.638785  decreased coverage  0.00000422955 
 
 
-
 
NC_013739  Cwoe_5665  short-chain dehydrogenase/reductase SDR  31.4 
 
 
275 aa  71.2  0.000000000008  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_1320  short-chain dehydrogenase/reductase SDR  35.34 
 
 
269 aa  70.5  0.00000000001  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_012792  Vapar_6205  short chain dehydrogenase  31.58 
 
 
274 aa  70.5  0.00000000001  Variovorax paradoxus S110  Bacteria  normal  0.218013  n/a   
 
 
-
 
NC_010338  Caul_0512  short-chain dehydrogenase/reductase SDR  34.51 
 
 
269 aa  70.5  0.00000000001  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0649  short chain dehydrogenase  31.4 
 
 
261 aa  70.5  0.00000000001  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_2884  short-chain dehydrogenase/reductase SDR  31.75 
 
 
273 aa  70.1  0.00000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_0089  short-chain dehydrogenase/reductase SDR  31.4 
 
 
264 aa  70.5  0.00000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A0036  putative short chain dehydrogenase  31.29 
 
 
232 aa  70.9  0.00000000001  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00856815  normal  0.0949052 
 
 
-
 
BN001308  ANIA_00179  oxidoreductase, short chain dehydrogenase/reductase family (AFU_orthologue; AFUA_5G11240)  34.68 
 
 
313 aa  69.7  0.00000000002  Aspergillus nidulans FGSC A4  Eukaryota  normal  0.983253  normal 
 
 
-
 
NC_013204  Elen_1205  short-chain dehydrogenase/reductase SDR  37.5 
 
 
256 aa  69.7  0.00000000002  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.12589 
 
 
-
 
NC_002947  PP_2711  short chain dehydrogenase  30.46 
 
 
268 aa  69.7  0.00000000002  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_7169  short chain dehydrogenase  32.91 
 
 
238 aa  69.7  0.00000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5699  short-chain dehydrogenase/reductase SDR  34.95 
 
 
265 aa  69.7  0.00000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.542454 
 
 
-
 
NC_010501  PputW619_3311  short chain dehydrogenase  30.46 
 
 
268 aa  69.7  0.00000000002  Pseudomonas putida W619  Bacteria  normal  0.0701949  normal 
 
 
-
 
NC_013093  Amir_2216  short-chain dehydrogenase/reductase SDR  33.04 
 
 
266 aa  70.1  0.00000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_4692  short-chain dehydrogenase/reductase SDR  31.71 
 
 
274 aa  69.7  0.00000000002  Methylobacterium populi BJ001  Bacteria  normal  0.169711  normal  0.0760952 
 
 
-
 
NC_011071  Smal_1569  short-chain dehydrogenase/reductase SDR  34.56 
 
 
245 aa  69.3  0.00000000003  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_2977  short-chain dehydrogenase/reductase SDR  36.04 
 
 
268 aa  69.3  0.00000000003  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.690113 
 
 
-
 
NC_007512  Plut_2026  short chain dehydrogenase/reductase family oxidoreductase  30.43 
 
 
227 aa  68.9  0.00000000003  Chlorobium luteolum DSM 273  Bacteria  normal  normal  0.293852 
 
 
-
 
NC_009512  Pput_3041  short chain dehydrogenase  30.46 
 
 
268 aa  69.3  0.00000000003  Pseudomonas putida F1  Bacteria  normal  0.631041  normal 
 
 
-
 
NC_009436  Ent638_1939  3-hydroxy acid dehydrogenase  29.6 
 
 
248 aa  68.9  0.00000000004  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A3915  putative short-chain dehydrogenase/reductase SDR  29.1 
 
 
248 aa  68.6  0.00000000004  Burkholderia xenovorans LB400  Bacteria  normal  0.29888  normal  0.0896324 
 
 
-
 
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