More than 300 homologs were found in PanDaTox collection
for query gene RSP_0684 on replicon NC_007493
Organism: Rhodobacter sphaeroides 2.4.1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007493  RSP_0684  oxidoreductase  100 
 
 
269 aa  539  9.999999999999999e-153  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2339  short-chain dehydrogenase/reductase SDR  100 
 
 
269 aa  539  9.999999999999999e-153  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.256384 
 
 
-
 
NC_009428  Rsph17025_0546  short-chain dehydrogenase/reductase SDR  96.65 
 
 
269 aa  524  1e-148  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0672  short-chain dehydrogenase/reductase SDR  61.71 
 
 
268 aa  340  1e-92  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_2532  short-chain dehydrogenase/reductase SDR  61.48 
 
 
267 aa  333  1e-90  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3883  short-chain dehydrogenase/reductase SDR  59.11 
 
 
269 aa  323  3e-87  Jannaschia sp. CCS1  Bacteria  normal  normal  0.0678915 
 
 
-
 
NC_008686  Pden_1754  short-chain dehydrogenase/reductase SDR  58.05 
 
 
269 aa  295  4e-79  Paracoccus denitrificans PD1222  Bacteria  hitchhiker  0.00112045  normal  0.182102 
 
 
-
 
NC_009667  Oant_1182  short-chain dehydrogenase/reductase SDR  41.13 
 
 
263 aa  177  1e-43  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2089  short-chain dehydrogenase/reductase SDR  40 
 
 
276 aa  174  9.999999999999999e-43  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.185872  hitchhiker  0.0000125896 
 
 
-
 
NC_008254  Meso_3434  short-chain dehydrogenase/reductase SDR  37.31 
 
 
263 aa  162  4.0000000000000004e-39  Chelativorans sp. BNC1  Bacteria  normal  0.101369  n/a   
 
 
-
 
NC_008781  Pnap_1241  short-chain dehydrogenase/reductase SDR  37.59 
 
 
260 aa  161  9e-39  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0407787  normal  0.415093 
 
 
-
 
NC_007948  Bpro_3536  short-chain dehydrogenase/reductase SDR  38.02 
 
 
274 aa  156  3e-37  Polaromonas sp. JS666  Bacteria  normal  normal  0.446578 
 
 
-
 
NC_008752  Aave_2790  short-chain dehydrogenase/reductase SDR  36.9 
 
 
269 aa  156  3e-37  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008347  Mmar10_2573  short-chain dehydrogenase/reductase SDR  35.41 
 
 
267 aa  155  9e-37  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_2046  short-chain dehydrogenase/reductase SDR  36.08 
 
 
263 aa  154  1e-36  Acidovorax sp. JS42  Bacteria  decreased coverage  0.00404736  normal 
 
 
-
 
NC_011992  Dtpsy_1869  short-chain dehydrogenase/reductase SDR  36.08 
 
 
263 aa  154  2e-36  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_4309  short-chain dehydrogenase/reductase SDR  36.72 
 
 
257 aa  145  7.0000000000000006e-34  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.313012  normal 
 
 
-
 
NC_008825  Mpe_A2921  dehydrogenase  35.27 
 
 
261 aa  140  1.9999999999999998e-32  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.932836 
 
 
-
 
NC_011894  Mnod_2723  short-chain dehydrogenase/reductase SDR  34.48 
 
 
251 aa  135  6.0000000000000005e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_1178  short-chain dehydrogenase/reductase SDR  38.1 
 
 
262 aa  132  6e-30  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010085  Nmar_0634  short-chain dehydrogenase/reductase SDR  32.31 
 
 
253 aa  131  1.0000000000000001e-29  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_013202  Hmuk_1523  short-chain dehydrogenase/reductase SDR  34.34 
 
 
269 aa  130  2.0000000000000002e-29  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_009429  Rsph17025_3588  hypothetical protein  35.38 
 
 
254 aa  130  2.0000000000000002e-29  Rhodobacter sphaeroides ATCC 17025  Bacteria  decreased coverage  0.00208776  normal  0.410255 
 
 
-
 
NC_009439  Pmen_2306  short-chain dehydrogenase/reductase SDR  33.73 
 
 
284 aa  130  2.0000000000000002e-29  Pseudomonas mendocina ymp  Bacteria  normal  0.361211  hitchhiker  0.00000740353 
 
 
-
 
NC_011894  Mnod_5444  short-chain dehydrogenase/reductase SDR  34.08 
 
 
255 aa  130  2.0000000000000002e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.844576  n/a   
 
 
-
 
NC_011004  Rpal_4070  short-chain dehydrogenase/reductase SDR  36.76 
 
 
275 aa  129  6e-29  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0214725  n/a   
 
 
-
 
NC_012856  Rpic12D_2582  short chain dehydrogenase  30.92 
 
 
269 aa  128  9.000000000000001e-29  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_1641  short-chain dehydrogenase/reductase SDR  32.44 
 
 
255 aa  128  1.0000000000000001e-28  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.000170009  n/a   
 
 
-
 
NC_010335  Caul_5136  short-chain dehydrogenase/reductase SDR  34.9 
 
 
254 aa  128  1.0000000000000001e-28  Caulobacter sp. K31  Bacteria  normal  0.708802  normal 
 
 
-
 
NC_010682  Rpic_2992  short chain dehydrogenase  30.53 
 
 
269 aa  127  2.0000000000000002e-28  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_0121  short-chain dehydrogenase/reductase SDR  32.56 
 
 
286 aa  127  2.0000000000000002e-28  Geobacter sp. M21  Bacteria  n/a    normal  0.984934 
 
 
-
 
NC_013946  Mrub_1897  short-chain dehydrogenase/reductase SDR  33.73 
 
 
247 aa  127  2.0000000000000002e-28  Meiothermus ruber DSM 1279  Bacteria  normal  hitchhiker  0.00100219 
 
 
-
 
NC_010511  M446_1803  short-chain dehydrogenase/reductase SDR  38.37 
 
 
262 aa  127  2.0000000000000002e-28  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.225984 
 
 
-
 
NC_013037  Dfer_0261  short-chain dehydrogenase/reductase SDR  34.11 
 
 
285 aa  126  5e-28  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.566144  normal 
 
 
-
 
NC_007492  Pfl01_2468  Short-chain dehydrogenase/reductase SDR  33.59 
 
 
254 aa  125  5e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_0138  short-chain dehydrogenase/reductase SDR  32.43 
 
 
286 aa  125  6e-28  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_4745  Short-chain dehydrogenase/reductase SDR  33.21 
 
 
254 aa  125  8.000000000000001e-28  Cupriavidus metallidurans CH34  Bacteria  normal  0.146753  normal  0.0678899 
 
 
-
 
NC_010623  Bphy_4948  3-ketoacyl-(acyl-carrier-protein) reductase  31.82 
 
 
250 aa  125  8.000000000000001e-28  Burkholderia phymatum STM815  Bacteria  normal  0.539161  normal 
 
 
-
 
BN001307  ANIA_01763  oxidoreductase, short-chain dehydrogenase/reductase family (AFU_orthologue; AFUA_6G09140)  33.33 
 
 
257 aa  125  9e-28  Aspergillus nidulans FGSC A4  Eukaryota  normal  0.134641  normal 
 
 
-
 
NC_009012  Cthe_0934  3-oxoacyl-[acyl-carrier-protein] reductase  32.68 
 
 
247 aa  125  1e-27  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00491532  n/a   
 
 
-
 
NC_010511  M446_0236  short-chain dehydrogenase/reductase SDR  32.69 
 
 
255 aa  124  1e-27  Methylobacterium sp. 4-46  Bacteria  normal  hitchhiker  0.00815339 
 
 
-
 
NC_009719  Plav_0273  short-chain dehydrogenase/reductase SDR  33.73 
 
 
254 aa  124  2e-27  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_010513  Xfasm12_1940  tropinone reductase  30.86 
 
 
258 aa  124  2e-27  Xylella fastidiosa M12  Bacteria  normal  0.803191  n/a   
 
 
-
 
NC_010508  Bcenmc03_0588  short chain dehydrogenase  31.8 
 
 
260 aa  123  3e-27  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.194347  normal  0.0391008 
 
 
-
 
NC_009654  Mmwyl1_4175  short-chain dehydrogenase/reductase SDR  30.27 
 
 
258 aa  123  3e-27  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_04045  tropinone reductase  31.64 
 
 
258 aa  123  3e-27  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1520  short-chain dehydrogenase/reductase SDR  31.42 
 
 
287 aa  123  3e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007510  Bcep18194_A3702  short chain dehydrogenase  32.18 
 
 
260 aa  122  4e-27  Burkholderia sp. 383  Bacteria  normal  0.709318  normal  0.605964 
 
 
-
 
NC_010577  XfasM23_1875  tropinone reductase  30.86 
 
 
258 aa  123  4e-27  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_1018  short-chain dehydrogenase/reductase SDR  30.83 
 
 
285 aa  122  5e-27  Methylobacterium extorquens PA1  Bacteria  normal  0.136189  normal 
 
 
-
 
NC_007517  Gmet_2194  Short-chain dehydrogenase/reductase SDR  31.01 
 
 
255 aa  122  6e-27  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00000131904  normal  0.0140674 
 
 
-
 
NC_011757  Mchl_0766  short-chain dehydrogenase/reductase SDR  30.83 
 
 
285 aa  122  6e-27  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.717925 
 
 
-
 
NC_008686  Pden_1255  3-ketoacyl-(acyl-carrier-protein) reductase  32.44 
 
 
247 aa  122  6e-27  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_0706  short-chain dehydrogenase/reductase SDR  30.47 
 
 
287 aa  122  6e-27  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_006685  CNC05340  d-arabinitol 2-dehydrogenase, putative  32 
 
 
355 aa  122  8e-27  Cryptococcus neoformans var. neoformans JEC21  Eukaryota  normal  0.656485  n/a   
 
 
-
 
NC_007958  RPD_4158  short-chain dehydrogenase/reductase SDR  34.13 
 
 
262 aa  122  8e-27  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.526951  normal 
 
 
-
 
NC_007348  Reut_B4043  Short-chain dehydrogenase/reductase SDR  33.21 
 
 
254 aa  122  9e-27  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_0224  7-alpha-hydroxysteroid dehydrogenase  31.87 
 
 
255 aa  121  9.999999999999999e-27  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.717009 
 
 
-
 
NC_010830  Aasi_0105  3-oxoacyl-(acyl-carrier-protein) reductase  31.1 
 
 
248 aa  121  9.999999999999999e-27  Candidatus Amoebophilus asiaticus 5a2  Bacteria  n/a    normal 
 
 
-
 
NC_008060  Bcen_0137  short chain dehydrogenase  31.42 
 
 
260 aa  121  9.999999999999999e-27  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0600475  n/a   
 
 
-
 
NC_009441  Fjoh_1994  short-chain dehydrogenase/reductase SDR  31.7 
 
 
245 aa  121  9.999999999999999e-27  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_6198  short-chain dehydrogenase/reductase SDR  31.92 
 
 
260 aa  121  9.999999999999999e-27  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008542  Bcen2424_0620  short chain dehydrogenase  31.42 
 
 
260 aa  121  9.999999999999999e-27  Burkholderia cenocepacia HI2424  Bacteria  normal  0.822121  n/a   
 
 
-
 
NC_011898  Ccel_1173  short-chain dehydrogenase/reductase SDR  31.92 
 
 
256 aa  121  9.999999999999999e-27  Clostridium cellulolyticum H10  Bacteria  normal  0.0283651  n/a   
 
 
-
 
NC_011071  Smal_3595  tropinone reductase  32.69 
 
 
258 aa  121  9.999999999999999e-27  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.855153  normal 
 
 
-
 
NC_013526  Tter_1966  short-chain dehydrogenase/reductase SDR  32.17 
 
 
254 aa  120  1.9999999999999998e-26  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2662  short-chain dehydrogenase/reductase SDR  35.74 
 
 
266 aa  120  1.9999999999999998e-26  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.783199  n/a   
 
 
-
 
NC_014165  Tbis_1608  short-chain dehydrogenase/reductase SDR  33.59 
 
 
250 aa  121  1.9999999999999998e-26  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_5059  short-chain dehydrogenase/reductase SDR  32.95 
 
 
266 aa  120  1.9999999999999998e-26  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_0669  short-chain dehydrogenase/reductase SDR  32.42 
 
 
255 aa  120  1.9999999999999998e-26  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2206  Short-chain dehydrogenase/reductase SDR  32.03 
 
 
254 aa  120  1.9999999999999998e-26  Geobacter metallireducens GS-15  Bacteria  normal  0.0824665  hitchhiker  0.00853535 
 
 
-
 
NC_010483  TRQ2_0608  short-chain dehydrogenase/reductase SDR  32.43 
 
 
251 aa  120  1.9999999999999998e-26  Thermotoga sp. RQ2  Bacteria  normal  0.236394  n/a   
 
 
-
 
NC_009513  Lreu_1659  short-chain dehydrogenase/reductase SDR  30.38 
 
 
251 aa  120  1.9999999999999998e-26  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_3906  short-chain dehydrogenase/reductase SDR  33.71 
 
 
253 aa  120  1.9999999999999998e-26  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.476334 
 
 
-
 
NC_009486  Tpet_0594  short-chain dehydrogenase/reductase SDR  32.43 
 
 
251 aa  120  1.9999999999999998e-26  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000000426585  n/a   
 
 
-
 
NC_010725  Mpop_1330  short-chain dehydrogenase/reductase SDR  31.2 
 
 
285 aa  120  3e-26  Methylobacterium populi BJ001  Bacteria  normal  normal  0.359984 
 
 
-
 
NC_013739  Cwoe_0833  short-chain dehydrogenase/reductase SDR  34.47 
 
 
264 aa  120  3e-26  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.943755 
 
 
-
 
NC_007348  Reut_B3470  short chain dehydrogenase  34.48 
 
 
262 aa  120  3e-26  Ralstonia eutropha JMP134  Bacteria  normal  0.698077  n/a   
 
 
-
 
NC_007434  BURPS1710b_3485  short chain dehydrogenase  31.7 
 
 
269 aa  120  3e-26  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_0774  3-ketoacyl-(acyl-carrier-protein) reductase  34.36 
 
 
246 aa  120  3e-26  Jannaschia sp. CCS1  Bacteria  normal  0.448664  normal 
 
 
-
 
NC_013132  Cpin_4842  short-chain dehydrogenase/reductase SDR  31.91 
 
 
249 aa  120  3e-26  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.00384997  hitchhiker  0.000208801 
 
 
-
 
NC_007963  Csal_1129  short-chain dehydrogenase/reductase SDR  32.68 
 
 
254 aa  119  3.9999999999999996e-26  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.40266  n/a   
 
 
-
 
NC_006348  BMA2487  short chain dehydrogenase  31.7 
 
 
269 aa  119  4.9999999999999996e-26  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_3298  short chain dehydrogenase  31.7 
 
 
259 aa  119  4.9999999999999996e-26  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1267  short chain dehydrogenase  31.7 
 
 
259 aa  119  4.9999999999999996e-26  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0407  short chain dehydrogenase  31.7 
 
 
259 aa  119  4.9999999999999996e-26  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009427  Saro_3607  short-chain dehydrogenase/reductase SDR  33.46 
 
 
261 aa  119  6e-26  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.197864  n/a   
 
 
-
 
NC_011661  Dtur_1771  short-chain dehydrogenase/reductase SDR  31.13 
 
 
252 aa  119  6e-26  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3449  short chain dehydrogenase  31.7 
 
 
259 aa  119  6e-26  Burkholderia pseudomallei 668  Bacteria  normal  0.93684  n/a   
 
 
-
 
NC_007963  Csal_0064  short-chain dehydrogenase/reductase SDR  30.59 
 
 
284 aa  119  7e-26  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3487  short chain dehydrogenase  31.7 
 
 
259 aa  119  7e-26  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_1429  3-ketoacyl-(acyl-carrier-protein) reductase  32.58 
 
 
256 aa  119  7e-26  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.865814 
 
 
-
 
NC_009512  Pput_3743  short-chain dehydrogenase/reductase SDR  33.2 
 
 
254 aa  118  7.999999999999999e-26  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B2590  short chain dehydrogenase  31.44 
 
 
263 aa  119  7.999999999999999e-26  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A2811  short chain dehydrogenase  31.44 
 
 
263 aa  119  7.999999999999999e-26  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_012792  Vapar_5326  short-chain dehydrogenase/reductase SDR  33.71 
 
 
256 aa  118  7.999999999999999e-26  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C2705  short chain dehydrogenase  31.44 
 
 
263 aa  119  7.999999999999999e-26  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.856225  normal 
 
 
-
 
NC_011094  SeSA_A2681  short chain dehydrogenase  31.44 
 
 
263 aa  119  7.999999999999999e-26  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A2639  short chain dehydrogenase  31.44 
 
 
263 aa  119  7.999999999999999e-26  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1651  short-chain dehydrogenase/reductase SDR  33.98 
 
 
254 aa  118  9e-26  Pseudomonas mendocina ymp  Bacteria  normal  0.44826  normal 
 
 
-
 
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