12 homologs were found in PanDaTox collection
for query gene RPD_1974 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007958  RPD_1974  hypothetical protein  100 
 
 		 434 aa  888    Rhodopseudomonas palustris BisB5  Bacteria  decreased coverage  0.00010435  normal  0.369682 
 
 
-
 
NC_007973  Rmet_2667  McrBC 5-methylcytosine restriction system component-like protein  29.37 
 
 		 424 aa  115  2.0000000000000002e-24  Cupriavidus metallidurans CH34  Bacteria  normal  0.0475891  normal  0.959156 
 
 
-
 
NC_008312  Tery_3582  McrBC 5-methylcytosine restriction system component-like  25.38 
 
 		 405 aa  65.1  0.000000002  Trichodesmium erythraeum IMS101  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012028  Hlac_2767  hypothetical protein  23.18 
 
 		 585 aa  65.1  0.000000002  Halorubrum lacusprofundi ATCC 49239  Archaea  n/a    n/a   
 
 
-
 
NC_013922  Nmag_0380  hypothetical protein  23.58 
 
 		 586 aa  58.2  0.0000003  Natrialba magadii ATCC 43099  Archaea  normal  0.163878  n/a   
 
 
-
 
NC_013158  Huta_1703  McrBC 5-methylcytosine restriction system component-like protein  23.68 
 
 		 421 aa  55.1  0.000002  Halorhabdus utahensis DSM 12940  Archaea  normal  1  n/a   
 
 
-
 
NC_010718  Nther_0806  McrBC 5-methylcytosine restriction system component-like protein  21.7 
 
 		 383 aa  52  0.00002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.0894928  hitchhiker  0.000053751 
 
 
-
 
NC_011769  DvMF_0230  McrBC 5-methylcytosine restriction system component-like protein  21.53 
 
 		 397 aa  50.4  0.00006  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.012519 
 
 
-
 
NC_013440  Hoch_2863  5-methylcytosine restriction system component- like protein  25.38 
 
 		 404 aa  49.3  0.0001  Haliangium ochraceum DSM 14365  Bacteria  normal  0.104188  normal  1 
 
 
-
 
CP001509  ECD_04211  5-methylcytosine-specific restriction enzyme McrBC, subunit McrC  28.69 
 
 		 348 aa  47  0.0007  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
NC_012892  B21_04175  hypothetical protein  28.69 
 
 		 348 aa  47  0.0007  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
CP001637  EcDH1_3652  5-methylcytosine-specific restriction enzyme subunit McrC  27.87 
 
 		 348 aa  45.4  0.002  Escherichia coli DH1  Bacteria  normal  1  n/a   
 
 
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