9 homologs were found in PanDaTox collection
for query gene RPD_0008 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007958  RPD_0008  divergent AAA region  100 
 
 
412 aa  836    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_1340  putative transcriptional regulator  33.73 
 
 
519 aa  209  5e-53  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_3426  putative transcriptional regulator  30.95 
 
 
438 aa  171  2e-41  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_1088  putative transcriptional regulator  31.72 
 
 
346 aa  105  1e-21  Thermosipho melanesiensis BI429  Bacteria  normal  0.41484  n/a   
 
 
-
 
NC_002936  DET1111  ATP-binding protein, putative  29.8 
 
 
359 aa  85.1  0.000000000000002  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0799  putative transcriptional regulator  26.77 
 
 
374 aa  48.1  0.0003  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_2084  divergent AAA region  33.33 
 
 
135 aa  47.8  0.0004  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.497784  normal 
 
 
-
 
NC_009012  Cthe_2890  putative transcriptional regulator  26.83 
 
 
389 aa  47.4  0.0004  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_2947  hypothetical protein  31.58 
 
 
356 aa  43.9  0.005  Cytophaga hutchinsonii ATCC 33406  Bacteria  hitchhiker  0.000000155126  hitchhiker  0.00244258 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>