11 homologs were found in PanDaTox collection
for query gene RPC_R0033 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007925  RPC_R0033  tRNA-Cys  100 
 
 
74 bp  147  4.0000000000000006e-34  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.0980795  normal  0.992488 
 
 
-
 
NC_007778  RPB_R0038  tRNA-Cys  98.65 
 
 
74 bp  139  1e-31  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.28254  normal 
 
 
-
 
NC_007958  RPD_R0042  tRNA-Cys  98.65 
 
 
74 bp  139  1e-31  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.217311  normal  0.0105918 
 
 
-
 
NC_007964  Nham_R0031  tRNA-Cys  90.54 
 
 
74 bp  91.7  2e-17  Nitrobacter hamburgensis X14  Bacteria  normal  0.392405  n/a   
 
 
-
 
NC_009485  BBta_tRNA45  tRNA-Cys  95.65 
 
 
74 bp  75.8  0.000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_R0027    95.24 
 
 
74 bp  67.9  0.0000000003  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.583398  normal  0.0425769 
 
 
-
 
NC_011004  Rpal_R0027  tRNA-Cys  95.24 
 
 
74 bp  67.9  0.0000000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.925736  n/a   
 
 
-
 
NC_009719  Plav_R0044  tRNA-Cys  85.14 
 
 
74 bp  60  0.00000007  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.373232 
 
 
-
 
NC_009720  Xaut_R0054  tRNA-Cys  85.14 
 
 
74 bp  60  0.00000007  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.762647 
 
 
-
 
NC_007794  Saro_R0007  tRNA-Cys  89.8 
 
 
74 bp  58  0.0000003  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_013926  Aboo_R0035  tRNA-Cys  96.15 
 
 
72 bp  44.1  0.004  Aciduliprofundum boonei T469  Archaea  decreased coverage  0.00020868  n/a   
 
 
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