13 homologs were found in PanDaTox collection
for query gene RPB_3688 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007778  RPB_3688  signal transduction protein  100 
 
 		 252 aa  461  1e-129  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
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NC_007958  RPD_1772  calcium-binding EF-hand  70.16 
 
 		 254 aa  238  5.999999999999999e-62  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.389103  normal  0.418687 
 
 
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NC_011004  Rpal_4339  putative signal transduction protein with EFhand domain  57.79 
 
 		 256 aa  189  5e-47  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.1378  n/a   
 
 
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NC_007925  RPC_1615  calcium-binding EF-hand  56.76 
 
 		 262 aa  139  3e-32  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.959507  normal  1 
 
 
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NC_009485  BBta_5331  calcium-binding domain-containing protein  49.47 
 
 		 256 aa  121  9.999999999999999e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0194602  normal  0.50977 
 
 
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NC_009361  OSTLU_32593  predicted protein  35.09 
 
 		 350 aa  47.4  0.0002  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  1  normal  0.0289606 
 
 
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NC_013595  Sros_2609  hypothetical protein  44.23 
 
 		 181 aa  47.4  0.0002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.339179  normal  0.690137 
 
 
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NC_013093  Amir_3842  putative signal transduction protein with EFhand domain  39.62 
 
 		 178 aa  46.2  0.0005  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.00258503  n/a   
 
 
-
 
NC_014210  Ndas_1450  putative signal transduction protein with EFhand domain  45.28 
 
 		 174 aa  45.4  0.0008  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.755568  normal  0.113909 
 
 
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NC_009719  Plav_0950  signal transduction protein  38.46 
 
 		 242 aa  43.5  0.003  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
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NC_014210  Ndas_1449  putative signal transduction protein with EFhand domain  42.11 
 
 		 175 aa  43.5  0.003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  0.181348 
 
 
-
 
NC_007492  Pfl01_4199  signal transduction protein  43.08 
 
 		 282 aa  43.1  0.004  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007778  RPB_2375  calcium-binding EF-hand protein  41.38 
 
 		 169 aa  42.4  0.007  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  0.572136 
 
 
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