12 homologs were found in PanDaTox collection
for query gene RPB_3520 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007778  RPB_3520  hypothetical protein  100 
 
 
313 aa  603  1.0000000000000001e-171  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.936766  normal  0.749977 
 
 
-
 
NC_007958  RPD_1939  hypothetical protein  66.67 
 
 
302 aa  346  3e-94  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0577581  normal  0.305533 
 
 
-
 
NC_011004  Rpal_2056  hypothetical protein  56.23 
 
 
292 aa  277  2e-73  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_2628  hypothetical protein  44.24 
 
 
305 aa  200  1.9999999999999998e-50  Nitrobacter hamburgensis X14  Bacteria  normal  0.460391  n/a   
 
 
-
 
NC_007925  RPC_1773  hypothetical protein  43.98 
 
 
334 aa  175  9.999999999999999e-43  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.185989  decreased coverage  0.00548408 
 
 
-
 
NC_007406  Nwi_2228  hypothetical protein  36.72 
 
 
274 aa  149  8e-35  Nitrobacter winogradskyi Nb-255  Bacteria  hitchhiker  0.00178512  normal 
 
 
-
 
NC_009485  BBta_3041  hypothetical protein  39.29 
 
 
321 aa  135  9.999999999999999e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_3320  hypothetical protein  34.62 
 
 
263 aa  43.5  0.004  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4496  hypothetical protein  44.19 
 
 
282 aa  43.9  0.004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008530  LGAS_1663  hypothetical protein  33.71 
 
 
2449 aa  42.7  0.007  Lactobacillus gasseri ATCC 33323  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_1645  hypothetical protein  41.3 
 
 
393 aa  42.7  0.007  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.46786 
 
 
-
 
NC_013721  HMPREF0424_0610  pullulanase, type I  28.41 
 
 
1888 aa  42.7  0.008  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
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