More than 300 homologs were found in PanDaTox collection
for query gene Psyr_2188 on replicon NC_007005
Organism: Pseudomonas syringae pv. syringae B728a



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007005  Psyr_2188  histidine kinase  100 
 
 
540 aa  1075    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.035953  normal 
 
 
-
 
NC_011901  Tgr7_1672  methyl-accepting chemotaxis sensory transducer  34.31 
 
 
544 aa  253  8.000000000000001e-66  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_2728  chemotaxis sensory transducer  45.92 
 
 
544 aa  243  6e-63  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.00837045  normal  0.306222 
 
 
-
 
NC_008752  Aave_0428  methyl-accepting chemotaxis sensory transducer  33.58 
 
 
597 aa  241  2.9999999999999997e-62  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_30820  putative methyl-accepting chemotaxis transducer  42.74 
 
 
535 aa  238  2e-61  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0142633  hitchhiker  0.0000000000042709 
 
 
-
 
NC_007298  Daro_2834  histidine kinase, HAMP region: chemotaxis sensory transducer  43.94 
 
 
671 aa  235  2.0000000000000002e-60  Dechloromonas aromatica RCB  Bacteria  normal  0.188903  normal 
 
 
-
 
NC_008752  Aave_2496  methyl-accepting chemotaxis sensory transducer  31.86 
 
 
537 aa  233  5e-60  Acidovorax citrulli AAC00-1  Bacteria  decreased coverage  0.00000862286  decreased coverage  0.00394801 
 
 
-
 
NC_008752  Aave_1956  methyl-accepting chemotaxis sensory transducer  32.78 
 
 
598 aa  231  3e-59  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0136938 
 
 
-
 
NC_008609  Ppro_1391  methyl-accepting chemotaxis sensory transducer  32.14 
 
 
557 aa  216  9.999999999999999e-55  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_3147  methyl-accepting chemotaxis sensory transducer  38.98 
 
 
540 aa  215  1.9999999999999998e-54  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0302394  n/a   
 
 
-
 
NC_011662  Tmz1t_1988  methyl-accepting chemotaxis sensory transducer  42.27 
 
 
674 aa  212  1e-53  Thauera sp. MZ1T  Bacteria  normal  0.588025  n/a   
 
 
-
 
NC_009654  Mmwyl1_0686  methyl-accepting chemotaxis sensory transducer  33.63 
 
 
551 aa  211  3e-53  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2933  histidine kinase, HAMP region: chemotaxis sensory transducer  32.36 
 
 
540 aa  208  2e-52  Dechloromonas aromatica RCB  Bacteria  decreased coverage  1.3489100000000001e-18  normal 
 
 
-
 
NC_009901  Spea_2398  methyl-accepting chemotaxis sensory transducer  29.51 
 
 
656 aa  206  1e-51  Shewanella pealeana ATCC 700345  Bacteria  normal  0.201842  n/a   
 
 
-
 
NC_012918  GM21_3719  methyl-accepting chemotaxis sensory transducer  31.67 
 
 
540 aa  205  2e-51  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008609  Ppro_0724  methyl-accepting chemotaxis sensory transducer  32.14 
 
 
539 aa  203  7e-51  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1033  methyl-accepting chemotaxis protein  39.87 
 
 
533 aa  202  9.999999999999999e-51  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_2644  chemotaxis transducer  43.57 
 
 
280 aa  202  1.9999999999999998e-50  Pseudomonas aeruginosa PA7  Bacteria  normal  0.120039  n/a   
 
 
-
 
NC_007005  Psyr_2240  histidine kinase, HAMP region: chemotaxis sensory transducer  40.25 
 
 
537 aa  202  1.9999999999999998e-50  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.942924 
 
 
-
 
NC_007492  Pfl01_2100  chemotaxis sensory transducer  42.77 
 
 
537 aa  201  3e-50  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.517374  normal  0.435335 
 
 
-
 
NC_002939  GSU1030  methyl-accepting chemotaxis protein  38.9 
 
 
549 aa  199  1.0000000000000001e-49  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3611  methyl-accepting chemotaxis sensory transducer  31.21 
 
 
540 aa  199  1.0000000000000001e-49  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  35.13 
 
 
637 aa  198  2.0000000000000003e-49  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_012918  GM21_2326  methyl-accepting chemotaxis sensory transducer  35.69 
 
 
547 aa  199  2.0000000000000003e-49  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008789  Hhal_0167  methyl-accepting chemotaxis sensory transducer  36.54 
 
 
540 aa  198  2.0000000000000003e-49  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1884  methyl-accepting chemotaxis sensory transducer  34.99 
 
 
547 aa  198  3e-49  Geobacter bemidjiensis Bem  Bacteria  normal  0.114501  n/a   
 
 
-
 
NC_009483  Gura_3311  methyl-accepting chemotaxis sensory transducer  35.46 
 
 
547 aa  195  2e-48  Geobacter uraniireducens Rf4  Bacteria  normal  0.691655  n/a   
 
 
-
 
NC_007298  Daro_3112  chemotaxis sensory transducer  39.68 
 
 
541 aa  195  2e-48  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_2782  methyl-accepting chemotaxis sensory transducer  38.56 
 
 
601 aa  194  3e-48  Rhodothermus marinus DSM 4252  Bacteria  normal  0.163256  n/a   
 
 
-
 
NC_008609  Ppro_1221  methyl-accepting chemotaxis sensory transducer  39.42 
 
 
544 aa  193  5e-48  Pelobacter propionicus DSM 2379  Bacteria  unclonable  0.000000143655  n/a   
 
 
-
 
NC_012793  GWCH70_1221  methyl-accepting chemotaxis sensory transducer  30.35 
 
 
564 aa  193  6e-48  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000139892  n/a   
 
 
-
 
NC_002939  GSU2942  methyl-accepting chemotaxis protein  37.28 
 
 
544 aa  191  2e-47  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0821  methyl-accepting chemotaxis sensory transducer  31.74 
 
 
545 aa  191  2e-47  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.000877148  hitchhiker  0.00000558474 
 
 
-
 
NC_002939  GSU1041  methyl-accepting chemotaxis protein  37.46 
 
 
541 aa  191  2.9999999999999997e-47  Geobacter sulfurreducens PCA  Bacteria  normal  0.893443  n/a   
 
 
-
 
NC_002939  GSU0750  methyl-accepting chemotaxis protein, putative  31.53 
 
 
539 aa  191  4e-47  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2845  methyl-accepting chemotaxis sensory transducer  35.07 
 
 
549 aa  190  5.999999999999999e-47  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000000597879  n/a   
 
 
-
 
NC_004578  PSPTO_4541  methyl-accepting chemotaxis protein  37.67 
 
 
541 aa  190  7e-47  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.726322  n/a   
 
 
-
 
NC_007005  Psyr_4218  histidine kinase, HAMP region: chemotaxis sensory transducer  32.19 
 
 
541 aa  189  1e-46  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.599163 
 
 
-
 
NC_002939  GSU1029  methyl-accepting chemotaxis protein  32.31 
 
 
549 aa  188  2e-46  Geobacter sulfurreducens PCA  Bacteria  normal  0.392996  n/a   
 
 
-
 
NC_008609  Ppro_3107  methyl-accepting chemotaxis sensory transducer  37.69 
 
 
542 aa  187  3e-46  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011313  VSAL_II0170  methyl-accepting chemotaxis protein  27.78 
 
 
543 aa  187  5e-46  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2890  methyl-accepting chemotaxis sensory transducer  37.07 
 
 
549 aa  186  7e-46  Geobacter lovleyi SZ  Bacteria  normal  0.824592  n/a   
 
 
-
 
NC_007517  Gmet_0529  methyl-accepting chemotaxis sensory transducer  37.05 
 
 
544 aa  186  7e-46  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_0798  methyl-accepting chemotaxis sensory transducer  37.85 
 
 
541 aa  186  7e-46  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2825  methyl-accepting chemotaxis sensory transducer  34.25 
 
 
570 aa  186  1.0000000000000001e-45  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.000443347 
 
 
-
 
NC_009439  Pmen_2650  methyl-accepting chemotaxis sensory transducer  34.65 
 
 
568 aa  185  2.0000000000000003e-45  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_5569  methyl-accepting chemotaxis protein  36.71 
 
 
541 aa  185  2.0000000000000003e-45  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3876  methyl-accepting chemotaxis sensory transducer  38.61 
 
 
535 aa  185  2.0000000000000003e-45  Geobacter bemidjiensis Bem  Bacteria  normal  0.74566  n/a   
 
 
-
 
NC_013501  Rmar_1624  methyl-accepting chemotaxis sensory transducer  39.49 
 
 
626 aa  184  3e-45  Rhodothermus marinus DSM 4252  Bacteria  normal  0.835429  n/a   
 
 
-
 
NC_008609  Ppro_3058  methyl-accepting chemotaxis sensory transducer  39.12 
 
 
518 aa  184  4.0000000000000006e-45  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_4297  methyl-accepting chemotaxis sensory transducer  31.99 
 
 
471 aa  184  4.0000000000000006e-45  Delftia acidovorans SPH-1  Bacteria  decreased coverage  0.00689697  normal 
 
 
-
 
NC_009483  Gura_0476  methyl-accepting chemotaxis sensory transducer  36.07 
 
 
830 aa  184  5.0000000000000004e-45  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3345  methyl-accepting chemotaxis sensory transducer  34.69 
 
 
542 aa  183  7e-45  Geobacter sp. M21  Bacteria  n/a    normal  0.0226154 
 
 
-
 
NC_010814  Glov_1041  methyl-accepting chemotaxis sensory transducer  34.87 
 
 
661 aa  183  8.000000000000001e-45  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013502  Rmar_2870  methyl-accepting chemotaxis sensory transducer  39.81 
 
 
636 aa  182  9.000000000000001e-45  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A3533  methyl-accepting chemotaxis protein  36.01 
 
 
660 aa  183  9.000000000000001e-45  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2961  methyl-accepting chemotaxis sensory transducer  31.07 
 
 
542 aa  182  1e-44  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0612  methyl-accepting chemotaxis sensory transducer  34.22 
 
 
543 aa  182  1e-44  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2776  methyl-accepting chemotaxis sensory transducer  36.94 
 
 
544 aa  182  1e-44  Geobacter lovleyi SZ  Bacteria  normal  0.839191  n/a   
 
 
-
 
NC_008609  Ppro_0142  methyl-accepting chemotaxis sensory transducer  29.84 
 
 
540 aa  182  1e-44  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0808523  n/a   
 
 
-
 
NC_012918  GM21_3964  methyl-accepting chemotaxis sensory transducer  38.29 
 
 
535 aa  182  1e-44  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000000000408371 
 
 
-
 
NC_010814  Glov_0461  methyl-accepting chemotaxis sensory transducer  36.52 
 
 
569 aa  182  1e-44  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007103  pE33L466_0016  methyl-accepting chemotaxis protein  36.01 
 
 
660 aa  181  2e-44  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0837  histidine kinase, HAMP region: chemotaxis sensory transducer  36.03 
 
 
680 aa  182  2e-44  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.0272085 
 
 
-
 
NC_011772  BCG9842_B1699  methyl-accepting chemotaxis protein  36.01 
 
 
660 aa  182  2e-44  Bacillus cereus G9842  Bacteria  normal  0.606414  hitchhiker  0.000000000000351139 
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  28.82 
 
 
543 aa  181  2.9999999999999997e-44  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_1714  methyl-accepting chemotaxis sensory transducer  35.29 
 
 
673 aa  181  2.9999999999999997e-44  Halorhodospira halophila SL1  Bacteria  normal  0.712235  n/a   
 
 
-
 
NC_002939  GSU1374  methyl-accepting chemotaxis protein  36.68 
 
 
541 aa  181  4e-44  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0380  histidine kinase, HAMP region: chemotaxis sensory transducer  34.25 
 
 
638 aa  181  4e-44  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU2579  methyl-accepting chemotaxis protein  34.73 
 
 
543 aa  180  4.999999999999999e-44  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_0317  methyl-accepting chemotaxis sensory transducer  36.31 
 
 
541 aa  180  4.999999999999999e-44  Pseudomonas putida KT2440  Bacteria  normal  0.365849  decreased coverage  0.0000342214 
 
 
-
 
NC_007517  Gmet_0712  methyl-accepting chemotaxis sensory transducer  38.54 
 
 
550 aa  180  4.999999999999999e-44  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_3709  methyl-accepting chemotaxis sensory transducer with Cache sensor  35.91 
 
 
546 aa  180  4.999999999999999e-44  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009831  Ssed_0529  methyl-accepting chemotaxis protein-like protein  32.55 
 
 
677 aa  180  5.999999999999999e-44  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1363  PAS  43.63 
 
 
544 aa  180  5.999999999999999e-44  Dechloromonas aromatica RCB  Bacteria  normal  hitchhiker  0.000284571 
 
 
-
 
NC_010322  PputGB1_0340  methyl-accepting chemotaxis sensory transducer  36.02 
 
 
541 aa  179  8e-44  Pseudomonas putida GB-1  Bacteria  normal  0.582352  normal 
 
 
-
 
NC_007517  Gmet_2828  methyl-accepting chemotaxis sensory transducer  35.8 
 
 
550 aa  179  8e-44  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.000014913 
 
 
-
 
NC_009512  Pput_0339  methyl-accepting chemotaxis sensory transducer  36.02 
 
 
541 aa  179  8e-44  Pseudomonas putida F1  Bacteria  normal  0.722367  normal 
 
 
-
 
NC_008463  PA14_43710  putative methyl-accepting chemotaxis transducer  37.89 
 
 
541 aa  179  9e-44  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU2652  methyl-accepting chemotaxis protein  34.08 
 
 
392 aa  179  1e-43  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  35.33 
 
 
640 aa  179  1e-43  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_003910  CPS_4964  methyl-accepting chemotaxis protein  35.59 
 
 
545 aa  178  2e-43  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_3666  chemotaxis transducer  36.91 
 
 
541 aa  178  2e-43  Pseudomonas aeruginosa PA7  Bacteria  normal  0.260935  n/a   
 
 
-
 
NC_004578  PSPTO_0117  methyl-accepting chemotaxis protein  35.82 
 
 
658 aa  179  2e-43  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_1266  chemotaxis sensory transducer  30.6 
 
 
562 aa  179  2e-43  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1701  methyl-accepting chemotaxis sensory transducer  34.17 
 
 
650 aa  179  2e-43  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.076135 
 
 
-
 
NC_011901  Tgr7_0157  methyl-accepting chemotaxis sensory transducer  36.22 
 
 
646 aa  178  2e-43  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.805637  n/a   
 
 
-
 
NC_013411  GYMC61_2101  methyl-accepting chemotaxis sensory transducer  30.02 
 
 
565 aa  177  3e-43  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_002939  GSU1032  methyl-accepting chemotaxis protein  36.26 
 
 
645 aa  177  3e-43  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3600  methyl-accepting chemotaxis sensory transducer  35.31 
 
 
546 aa  177  3e-43  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1286  methyl-accepting chemotaxis sensory transducer  37.43 
 
 
538 aa  178  3e-43  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2998  methyl-accepting chemotaxis sensory transducer  37.9 
 
 
549 aa  177  4e-43  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3098  methyl-accepting chemotaxis protein  35.01 
 
 
642 aa  177  5e-43  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.398555  n/a   
 
 
-
 
NC_010501  PputW619_4890  methyl-accepting chemotaxis sensory transducer  36.31 
 
 
541 aa  177  5e-43  Pseudomonas putida W619  Bacteria  normal  0.452969  normal  0.355365 
 
 
-
 
NC_011901  Tgr7_2492  methyl-accepting chemotaxis sensory transducer  34.83 
 
 
572 aa  177  5e-43  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK2273  methyl-accepting chemotaxis protein  35.75 
 
 
650 aa  177  6e-43  Bacillus cereus E33L  Bacteria  normal  0.487735  n/a   
 
 
-
 
NC_009483  Gura_0375  methyl-accepting chemotaxis sensory transducer  31.85 
 
 
674 aa  177  6e-43  Geobacter uraniireducens Rf4  Bacteria  normal  0.129925  n/a   
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  36.27 
 
 
636 aa  177  6e-43  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
NC_002939  GSU0401  methyl-accepting chemotaxis protein, putative  37.25 
 
 
539 aa  176  9e-43  Geobacter sulfurreducens PCA  Bacteria  normal  0.395676  n/a   
 
 
-
 
NC_009485  BBta_2905  putative methyl-accepting chemotaxis protein  28.85 
 
 
542 aa  176  9.999999999999999e-43  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.234112  normal  0.211145 
 
 
-
 
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