23 homologs were found in PanDaTox collection
for query gene Pput_4003 on replicon NC_009512
Organism: Pseudomonas putida F1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_002947  PP_1716  Cro/CI family transcriptional regulator  100 
 
 		 112 aa  216  7.999999999999999e-56  Pseudomonas putida KT2440  Bacteria  hitchhiker  0.000130124  normal  0.0231665 
 
 
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NC_009512  Pput_4003  XRE family transcriptional regulator  100 
 
 		 112 aa  216  7.999999999999999e-56  Pseudomonas putida F1  Bacteria  hitchhiker  0.00000134059  normal  1 
 
 
-
 
NC_010322  PputGB1_1308  XRE family transcriptional regulator  96.43 
 
 		 112 aa  206  8e-53  Pseudomonas putida GB-1  Bacteria  hitchhiker  0.0000019995  normal  0.279059 
 
 
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NC_010501  PputW619_1266  XRE family transcriptional regulator  89.29 
 
 		 112 aa  195  1.0000000000000001e-49  Pseudomonas putida W619  Bacteria  hitchhiker  0.0000000461097  normal  0.0226828 
 
 
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NC_007005  Psyr_1596  helix-hairpin-helix DNA-binding motif-containing protein  56.48 
 
 		 112 aa  128  3e-29  Pseudomonas syringae pv. syringae B728a  Bacteria  hitchhiker  0.0000735944  normal  0.0306402 
 
 
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NC_004578  PSPTO_3888  hypothetical protein  59.09 
 
 		 113 aa  125  1.0000000000000001e-28  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  hitchhiker  0.0000176936  n/a   
 
 
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NC_007492  Pfl01_1673  XRE family transcriptional regulator  56.64 
 
 		 113 aa  124  6e-28  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.0000189543  normal  0.0572625 
 
 
-
 
NC_009439  Pmen_1317  XRE family transcriptional regulator  57.8 
 
 		 106 aa  121  4e-27  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00000865545  normal  1 
 
 
-
 
NC_008463  PA14_21850  putative transcriptional regulator  50.94 
 
 		 103 aa  98.6  3e-20  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.00000342125  hitchhiker  0.00251437 
 
 
-
 
NC_009656  PSPA7_1864  putative transcriptional regulator  48.11 
 
 		 103 aa  81.3  0.000000000000005  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0233232  n/a   
 
 
-
 
NC_012560  Avin_35190  DNA-binding protein  58.62 
 
 		 65 aa  76.6  0.0000000000001  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_007498  Pcar_1786  helix-turn-helix transcriptional regulator  36.07 
 
 		 124 aa  53.9  0.0000008  Pelobacter carbinolicus DSM 2380  Bacteria  normal  1  n/a   
 
 
-
 
NC_011060  Ppha_0986  transcriptional regulator, XRE family  29.17 
 
 		 130 aa  52.4  0.000002  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009664  Krad_1778  transcriptional regulator, XRE family  46.15 
 
 		 88 aa  45.8  0.0002  Kineococcus radiotolerans SRS30216  Bacteria  normal  1  normal  0.815074 
 
 
-
 
NC_007484  Noc_2542  XRE family transcriptional regulator  32.11 
 
 		 165 aa  45.4  0.0003  Nitrosococcus oceani ATCC 19707  Bacteria  normal  1  n/a   
 
 
-
 
NC_013947  Snas_5338  transcriptional regulator, XRE family  35.29 
 
 		 503 aa  44.7  0.0005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  0.81894 
 
 
-
 
NC_013385  Adeg_0019  transcriptional regulator, XRE family  32.69 
 
 		 144 aa  42.4  0.002  Ammonifex degensii KC4  Bacteria  normal  0.0401744  n/a   
 
 
-
 
NC_013421  Pecwa_0405  transcriptional regulator, XRE family  30.7 
 
 		 123 aa  42  0.002  Pectobacterium wasabiae WPP163  Bacteria  normal  0.267838  n/a   
 
 
-
 
NC_009485  BBta_6629  putative Phage-related transcriptional regulator  34.92 
 
 		 143 aa  40.8  0.006  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  0.275503 
 
 
-
 
NC_011898  Ccel_1150  XRE family plasmid maintenance system antidote protein  41.38 
 
 		 230 aa  40.8  0.006  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.000248041  n/a   
 
 
-
 
NC_011894  Mnod_0604  transcriptional regulator, XRE family  27.41 
 
 		 138 aa  40.8  0.007  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_011658  BCAH187_A0631  hypothetical protein  34.78 
 
 		 73 aa  40.4  0.008  Bacillus cereus AH187  Bacteria  normal  1  n/a   
 
 
-
 
NC_009050  Rsph17029_3349  XRE family transcriptional regulator  38 
 
 		 115 aa  40  0.01  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  0.185008 
 
 
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