More than 300 homologs were found in PanDaTox collection
for query gene PputW619_4451 on replicon NC_010501
Organism: Pseudomonas putida W619



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010501  PputW619_4451  short chain dehydrogenase/reductase family oxidoreductase  100 
 
 
232 aa  473  1e-132  Pseudomonas putida W619  Bacteria  normal  0.928751  normal 
 
 
-
 
NC_010322  PputGB1_0779  short chain dehydrogenase/reductase family oxidoreductase  69.4 
 
 
232 aa  330  1e-89  Pseudomonas putida GB-1  Bacteria  normal  0.0946861  normal 
 
 
-
 
NC_002947  PP_0738  hypothetical protein  66.81 
 
 
232 aa  324  6e-88  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0766  hypothetical protein  65.55 
 
 
209 aa  291  7e-78  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4738  Short-chain dehydrogenase/reductase SDR  31.17 
 
 
260 aa  125  6e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.9226  normal  0.284155 
 
 
-
 
NC_009439  Pmen_1069  short-chain dehydrogenase/reductase SDR  32.56 
 
 
251 aa  121  9.999999999999999e-27  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_3172  short-chain dehydrogenase/reductase SDR  33.96 
 
 
250 aa  118  7e-26  Pseudomonas putida W619  Bacteria  normal  0.0471693  normal 
 
 
-
 
NC_007005  Psyr_0959  Short-chain dehydrogenase/reductase SDR  31.25 
 
 
262 aa  112  6e-24  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1119  oxidoreductase, short chain dehydrogenase/reductase family  32.73 
 
 
262 aa  108  6e-23  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2737  short chain dehydrogenase/reductase family oxidoreductase  32.55 
 
 
250 aa  95.5  7e-19  Pseudomonas putida KT2440  Bacteria  normal  0.420132  normal 
 
 
-
 
NC_009512  Pput_3016  short-chain dehydrogenase/reductase SDR  32.55 
 
 
250 aa  93.6  2e-18  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2099  short-chain dehydrogenase/reductase SDR  32.26 
 
 
250 aa  91.7  8e-18  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0463  short-chain dehydrogenase/reductase SDR  29.23 
 
 
264 aa  86.3  4e-16  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3066  short-chain dehydrogenase/reductase SDR  29.81 
 
 
266 aa  83.2  0.000000000000003  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3052  short-chain dehydrogenase/reductase SDR  32.21 
 
 
266 aa  83.6  0.000000000000003  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1311  short-chain dehydrogenase/reductase SDR  30.92 
 
 
266 aa  80.5  0.00000000000002  Shewanella baltica OS223  Bacteria  normal  normal  0.978372 
 
 
-
 
NC_009438  Sputcn32_2712  short-chain dehydrogenase/reductase SDR  31.09 
 
 
275 aa  80.9  0.00000000000002  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_4073  short-chain dehydrogenase/reductase SDR  28.7 
 
 
252 aa  80.5  0.00000000000002  Marinomonas sp. MWYL1  Bacteria  normal  0.576341  normal 
 
 
-
 
NC_008740  Maqu_1484  short-chain dehydrogenase/reductase SDR  30.2 
 
 
260 aa  80.5  0.00000000000002  Marinobacter aquaeolei VT8  Bacteria  normal  0.591298  n/a   
 
 
-
 
NC_008322  Shewmr7_1238  short-chain dehydrogenase/reductase SDR  29.86 
 
 
266 aa  79.7  0.00000000000004  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_3034  short-chain dehydrogenase/reductase SDR  31.05 
 
 
249 aa  79  0.00000000000007  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.377805  n/a   
 
 
-
 
NC_009997  Sbal195_3209  short-chain dehydrogenase/reductase SDR  30.43 
 
 
266 aa  78.6  0.00000000000008  Shewanella baltica OS195  Bacteria  normal  normal  0.857449 
 
 
-
 
NC_008321  Shewmr4_1167  short-chain dehydrogenase/reductase SDR  29.38 
 
 
266 aa  78.2  0.00000000000009  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1168  short-chain dehydrogenase/reductase SDR  29.86 
 
 
266 aa  77.8  0.0000000000001  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3382  short chain dehydrogenase/reductase family oxidoreductase  31.91 
 
 
266 aa  75.1  0.0000000000009  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010557  BamMC406_6492  short-chain dehydrogenase/reductase SDR  29 
 
 
282 aa  72.8  0.000000000005  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_01434  Short chain dehydrogenase family protein  25.12 
 
 
239 aa  71.6  0.000000000008  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008392  Bamb_5739  short-chain dehydrogenase/reductase SDR  29 
 
 
282 aa  71.2  0.00000000001  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.749773 
 
 
-
 
NC_008709  Ping_1000  short-chain dehydrogenase/reductase SDR  26.98 
 
 
240 aa  69.7  0.00000000003  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B2319  putative short-chain dehydrogenase/reductase SDR  29.36 
 
 
259 aa  69.3  0.00000000004  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_0468  short-chain dehydrogenase/reductase SDR  28.84 
 
 
257 aa  69.3  0.00000000005  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011369  Rleg2_1783  short-chain dehydrogenase/reductase SDR  27.16 
 
 
247 aa  68.9  0.00000000006  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0185042  normal  0.0937687 
 
 
-
 
NC_007912  Sde_2469  TonB-dependent receptor  26.54 
 
 
265 aa  68.6  0.00000000007  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_0085  gluconate 5-dehydrogenase  26.77 
 
 
256 aa  67.8  0.0000000001  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4573  short-chain dehydrogenase/reductase SDR  28.36 
 
 
280 aa  67.8  0.0000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
BN001307  ANIA_02039  short chain oxidoreductase (CsgA), putative (AFU_orthologue; AFUA_4G00910)  33.79 
 
 
251 aa  66.2  0.0000000004  Aspergillus nidulans FGSC A4  Eukaryota  normal  0.049775  normal  0.21203 
 
 
-
 
NC_009436  Ent638_2039  short-chain dehydrogenase/reductase SDR  29.33 
 
 
249 aa  66.2  0.0000000004  Enterobacter sp. 638  Bacteria  normal  0.292922  normal  0.566372 
 
 
-
 
NC_008700  Sama_0813  short chain dehydrogenase/reductase family oxidoreductase  28.14 
 
 
253 aa  65.9  0.0000000005  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_0245  short-chain dehydrogenase/reductase SDR  26.45 
 
 
272 aa  65.5  0.0000000006  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.25903 
 
 
-
 
NC_011901  Tgr7_1398  short-chain dehydrogenase/reductase SDR  28.11 
 
 
249 aa  65.5  0.0000000007  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.646056  n/a   
 
 
-
 
NC_013501  Rmar_2801  3-oxoacyl-(acyl-carrier-protein) reductase  25.94 
 
 
249 aa  65.1  0.0000000008  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_1727  short-chain dehydrogenase/reductase SDR  26.54 
 
 
265 aa  64.7  0.000000001  Acidiphilium cryptum JF-5  Bacteria  normal  0.218017  n/a   
 
 
-
 
NC_012880  Dd703_1248  short chain dehydrogenase  28.21 
 
 
282 aa  65.1  0.000000001  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2130  3-hydroxy acid dehydrogenase  31.3 
 
 
249 aa  64.3  0.000000002  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_4680  short-chain dehydrogenase/reductase SDR  25 
 
 
276 aa  63.2  0.000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_4296  short chain dehydrogenase  31.25 
 
 
280 aa  62.8  0.000000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6145  short-chain dehydrogenase/reductase SDR  26.32 
 
 
258 aa  62.8  0.000000005  Burkholderia phytofirmans PsJN  Bacteria  normal  0.899344  normal 
 
 
-
 
NC_013757  Gobs_3795  short-chain dehydrogenase/reductase SDR  26.81 
 
 
252 aa  62  0.000000008  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.586754  n/a   
 
 
-
 
NC_008048  Sala_0078  short-chain dehydrogenase/reductase SDR  33.9 
 
 
283 aa  61.6  0.000000009  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.406068  normal 
 
 
-
 
NC_013131  Caci_3280  short-chain dehydrogenase/reductase SDR  30.2 
 
 
232 aa  61.6  0.000000009  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.798057  normal 
 
 
-
 
NC_012850  Rleg_4560  short chain dehydrogenase  28.72 
 
 
280 aa  61.6  0.00000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0967831  normal 
 
 
-
 
NC_013093  Amir_5128  short-chain dehydrogenase/reductase SDR  29.65 
 
 
270 aa  61.2  0.00000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1893  3-hydroxy acid dehydrogenase  30.53 
 
 
249 aa  61.6  0.00000001  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3010  short-chain dehydrogenase/reductase SDR  29.19 
 
 
276 aa  61.2  0.00000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    decreased coverage  0.000215509 
 
 
-
 
NC_009436  Ent638_1490  short-chain dehydrogenase/reductase SDR  27.4 
 
 
239 aa  61.6  0.00000001  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1619  short-chain dehydrogenase/reductase SDR  26.21 
 
 
277 aa  60.8  0.00000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.44916 
 
 
-
 
NC_011894  Mnod_3075  short-chain dehydrogenase/reductase SDR  25.74 
 
 
261 aa  60.8  0.00000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2050  3-hydroxy acid dehydrogenase  29.01 
 
 
249 aa  59.7  0.00000003  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.309895  n/a   
 
 
-
 
NC_009439  Pmen_3735  short chain dehydrogenase  25.54 
 
 
281 aa  59.7  0.00000003  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_6457  short-chain dehydrogenase/reductase SDR  26.29 
 
 
252 aa  60.1  0.00000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.805943 
 
 
-
 
NC_013037  Dfer_3040  short-chain dehydrogenase/reductase SDR  24.45 
 
 
247 aa  60.1  0.00000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.0850209 
 
 
-
 
NC_013037  Dfer_1115  short-chain dehydrogenase/reductase SDR  37.93 
 
 
281 aa  60.1  0.00000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.299534  normal  0.313819 
 
 
-
 
NC_009425  Ent638_4222  short-chain dehydrogenase/reductase SDR  28.5 
 
 
242 aa  60.1  0.00000003  Enterobacter sp. 638  Bacteria  normal  0.186526  normal 
 
 
-
 
NC_013421  Pecwa_2351  3-hydroxy acid dehydrogenase  29.01 
 
 
249 aa  60.1  0.00000003  Pectobacterium wasabiae WPP163  Bacteria  normal  0.11526  n/a   
 
 
-
 
NC_013422  Hneap_1889  short-chain dehydrogenase/reductase SDR  25.81 
 
 
256 aa  59.7  0.00000004  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_12680  short chain dehydrogenase  27.17 
 
 
278 aa  59.7  0.00000004  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_5047  short-chain dehydrogenase/reductase SDR  29.32 
 
 
281 aa  59.7  0.00000004  Actinosynnema mirum DSM 43827  Bacteria  normal  0.243534  n/a   
 
 
-
 
NC_013132  Cpin_3299  short-chain dehydrogenase/reductase SDR  37.21 
 
 
279 aa  59.7  0.00000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  hitchhiker  0.0000868521 
 
 
-
 
NC_010506  Swoo_2775  short-chain dehydrogenase/reductase SDR  27.94 
 
 
238 aa  59.3  0.00000005  Shewanella woodyi ATCC 51908  Bacteria  normal  0.88847  normal  0.739494 
 
 
-
 
NC_009675  Anae109_1109  short-chain dehydrogenase/reductase SDR  33.33 
 
 
254 aa  59.3  0.00000005  Anaeromyxobacter sp. Fw109-5  Bacteria  hitchhiker  0.00727999  normal  0.180483 
 
 
-
 
NC_012912  Dd1591_3324  short-chain dehydrogenase/reductase SDR  23.64 
 
 
273 aa  58.5  0.00000009  Dickeya zeae Ech1591  Bacteria  normal  0.180623  n/a   
 
 
-
 
NC_008757  Pnap_4147  2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase  31.78 
 
 
276 aa  58.5  0.00000009  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.180269 
 
 
-
 
NC_007519  Dde_1841  short chain dehydrogenase/reductase family oxidoreductase  27.87 
 
 
250 aa  58.2  0.0000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00165114  n/a   
 
 
-
 
NC_010622  Bphy_2346  short-chain dehydrogenase/reductase SDR  25.97 
 
 
257 aa  57.8  0.0000001  Burkholderia phymatum STM815  Bacteria  normal  0.605108  normal  0.0943454 
 
 
-
 
NC_007948  Bpro_4205  short chain dehydrogenase  25.35 
 
 
249 aa  57.8  0.0000001  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A4299  putative short-chain dehydrogenase/reductase SDR  27.27 
 
 
291 aa  58.2  0.0000001  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C1192  2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase  32.61 
 
 
277 aa  58.2  0.0000001  Burkholderia xenovorans LB400  Bacteria  normal  0.872437  normal 
 
 
-
 
NC_009485  BBta_4730  putative short-chain dehydrogenases/reductases (SDR) family protein  27.32 
 
 
260 aa  58.2  0.0000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_1840  short-chain dehydrogenase/reductase SDR  33.33 
 
 
279 aa  58.2  0.0000001  Flavobacterium johnsoniae UW101  Bacteria  normal  0.205485  n/a   
 
 
-
 
NC_009707  JJD26997_1181  short chain dehydrogenase/reductase family oxidoreductase  23.79 
 
 
249 aa  57.8  0.0000002  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2076  short chain dehydrogenase/reductase family oxidoreductase  31.21 
 
 
248 aa  57  0.0000002  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3251  putative short-chain dehydrogenase  31.21 
 
 
248 aa  57  0.0000002  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B0244  Short-chain dehydrogenase/reductase SDR  32.41 
 
 
291 aa  57.4  0.0000002  Burkholderia sp. 383  Bacteria  normal  normal  0.864634 
 
 
-
 
NC_009080  BMA10247_1944  short chain dehydrogenase/reductase family oxidoreductase  31.21 
 
 
248 aa  57  0.0000002  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2666  short chain dehydrogenase/reductase family oxidoreductase  31.21 
 
 
248 aa  57  0.0000002  Burkholderia mallei NCTC 10229  Bacteria  normal  0.99175  n/a   
 
 
-
 
NC_009074  BURPS668_3198  short chain dehydrogenase/reductase family oxidoreductase  31.21 
 
 
248 aa  57  0.0000002  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008787  CJJ81176_0850  short chain dehydrogenase/reductase family oxidoreductase  23.79 
 
 
249 aa  57  0.0000002  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A2674  short chain dehydrogenase  27.89 
 
 
286 aa  57.4  0.0000002  Burkholderia xenovorans LB400  Bacteria  normal  0.570073  normal 
 
 
-
 
NC_008785  BMASAVP1_A0832  short chain dehydrogenase/reductase family oxidoreductase  31.21 
 
 
248 aa  57  0.0000002  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3236  short chain dehydrogenase/reductase family oxidoreductase  31.21 
 
 
248 aa  57  0.0000002  Burkholderia pseudomallei 1106a  Bacteria  normal  0.964469  n/a   
 
 
-
 
NC_013132  Cpin_2894  short-chain dehydrogenase/reductase SDR  25.46 
 
 
287 aa  57.4  0.0000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_3313  short-chain dehydrogenase/reductase SDR  25.26 
 
 
281 aa  57.4  0.0000002  Trichodesmium erythraeum IMS101  Bacteria  normal  0.320524  normal  0.08809 
 
 
-
 
NC_009656  PSPA7_3225  bacilysin biosynthesis oxidoreductase BacC  29.41 
 
 
242 aa  56.6  0.0000003  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_006055  Mfl173  dehydrogenase  24.06 
 
 
278 aa  56.6  0.0000003  Mesoplasma florum L1  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_4247  short-chain dehydrogenase/reductase SDR  34.55 
 
 
275 aa  56.6  0.0000003  Actinosynnema mirum DSM 43827  Bacteria  normal  0.286455  n/a   
 
 
-
 
NC_012856  Rpic12D_0723  short-chain dehydrogenase/reductase SDR  29.77 
 
 
250 aa  57  0.0000003  Ralstonia pickettii 12D  Bacteria  normal  0.335838  normal  0.191484 
 
 
-
 
NC_007777  Francci3_4138  short chain dehydrogenase  28.37 
 
 
303 aa  57  0.0000003  Frankia sp. CcI3  Bacteria  normal  0.452621  normal 
 
 
-
 
NC_010515  Bcenmc03_3883  short-chain dehydrogenase/reductase SDR  24.04 
 
 
248 aa  57  0.0000003  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.445893 
 
 
-
 
NC_011662  Tmz1t_0629  short-chain dehydrogenase/reductase SDR  29.33 
 
 
248 aa  56.6  0.0000003  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_3638  short-chain dehydrogenase/reductase SDR  24.04 
 
 
248 aa  56.6  0.0000003  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0316279  normal 
 
 
-
 
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