19 homologs were found in PanDaTox collection
for query gene PputW619_0884 on replicon NC_010501
Organism: Pseudomonas putida W619



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004578  PSPTO_1238  alginate biosynthesis protein AlgG  71.54 
 
 
536 aa  780    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_10920  Mannuronan C-5-Epimerase  62.93 
 
 
526 aa  691    Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_0884  carbohydrate-binding and sugar hydrolysis  100 
 
 
519 aa  1065    Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_4566  carbohydrate-binding and sugar hydrolysis  95.57 
 
 
519 aa  999    Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_1600  alginate-c5-mannuronan-epimerase AlgG  69.17 
 
 
539 aa  734    Pseudomonas aeruginosa PA7  Bacteria  normal  0.911541  n/a   
 
 
-
 
NC_009512  Pput_4442  carbohydrate-binding and sugar hydrolysis  94.41 
 
 
519 aa  993    Pseudomonas putida F1  Bacteria  normal  0.094084  normal  0.778652 
 
 
-
 
NC_009439  Pmen_1026  carbohydrate-binding and sugar hydrolysis  65.35 
 
 
511 aa  674    Pseudomonas mendocina ymp  Bacteria  normal  0.931695  normal 
 
 
-
 
NC_008463  PA14_18500  alginate-c5-mannuronan-epimerase AlgG  69.17 
 
 
543 aa  734    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0371446  normal 
 
 
-
 
NC_007492  Pfl01_0955  carbohydrate binding and sugar hydrolysis  81.52 
 
 
523 aa  880    Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.21055  normal 
 
 
-
 
NC_007005  Psyr_1058  parallel beta-helix repeat-containing protein  71.7 
 
 
536 aa  770    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0674089  normal 
 
 
-
 
NC_002947  PP_1283  carbohydrate-binding and sugar hydrolysis  94.8 
 
 
557 aa  999    Pseudomonas putida KT2440  Bacteria  normal  0.465255  normal 
 
 
-
 
NC_009921  Franean1_6675  parallel beta-helix repeat-containing protein  30.71 
 
 
497 aa  99.4  1e-19  Frankia sp. EAN1pec  Bacteria  normal  0.500799  normal  0.284088 
 
 
-
 
NC_009439  Pmen_1667  hypothetical protein  24.62 
 
 
493 aa  76.3  0.000000000001  Pseudomonas mendocina ymp  Bacteria  normal  0.240625  normal 
 
 
-
 
NC_008553  Mthe_1273  parallel beta-helix repeat-containing protein  27.12 
 
 
510 aa  48.5  0.0003  Methanosaeta thermophila PT  Archaea  normal  0.429071  n/a   
 
 
-
 
NC_007796  Mhun_0949  TPR repeat-containing protein  39.24 
 
 
1121 aa  45.8  0.002  Methanospirillum hungatei JF-1  Archaea  normal  0.0849269  normal  0.0980091 
 
 
-
 
NC_007005  Psyr_3823  putative hemolysin-type calcium-binding region  22.37 
 
 
1610 aa  45.4  0.002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  hitchhiker  0.00466543 
 
 
-
 
NC_009921  Franean1_7282  hypothetical protein  23 
 
 
867 aa  45.4  0.003  Frankia sp. EAN1pec  Bacteria  normal  0.827215  normal  0.313024 
 
 
-
 
NC_012560  Avin_51170  Secreted mannuronan C-5 epimerase  25.95 
 
 
1839 aa  43.9  0.006  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_4084  mannuronan C-5-epimerase, putative  22.37 
 
 
1610 aa  43.9  0.007  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.202459  n/a   
 
 
-
 
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