More than 300 homologs were found in PanDaTox collection
for query gene Ppha_0658 on replicon NC_011060
Organism: Pelodictyon phaeoclathratiforme BU-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011060  Ppha_0658  crossover junction endodeoxyribonuclease RuvC  100 
 
 
191 aa  390  1e-108  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.545827  n/a   
 
 
-
 
NC_008639  Cpha266_0539  crossover junction endodeoxyribonuclease RuvC  67.91 
 
 
187 aa  253  2.0000000000000002e-66  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_0476  crossover junction endodeoxyribonuclease RuvC  65.26 
 
 
190 aa  238  2.9999999999999997e-62  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_0164  crossover junction endodeoxyribonuclease RuvC  63.87 
 
 
192 aa  235  4e-61  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_1642  crossover junction endodeoxyribonuclease RuvC  57.75 
 
 
191 aa  215  2.9999999999999998e-55  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_011059  Paes_0497  crossover junction endodeoxyribonuclease RuvC  53.44 
 
 
187 aa  201  4e-51  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.655461  normal 
 
 
-
 
NC_010831  Cphamn1_0543  crossover junction endodeoxyribonuclease RuvC  54.26 
 
 
186 aa  199  3e-50  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_2183  Holliday junction resolvase  40.22 
 
 
200 aa  154  6e-37  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.198911 
 
 
-
 
NC_009783  VIBHAR_01598  Holliday junction resolvase  49.34 
 
 
173 aa  143  2e-33  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011312  VSAL_I1887  Holliday junction resolvase  48.99 
 
 
173 aa  142  3e-33  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.903201  n/a   
 
 
-
 
NC_010718  Nther_1798  Holliday junction endonuclease RuvC  40.67 
 
 
161 aa  140  8e-33  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  hitchhiker  0.000582609 
 
 
-
 
NC_013730  Slin_2240  crossover junction endodeoxyribonuclease RuvC  37.3 
 
 
182 aa  140  9.999999999999999e-33  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_0400  crossover junction endodeoxyribonuclease RuvC  36.31 
 
 
187 aa  140  1.9999999999999998e-32  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.253093 
 
 
-
 
NC_010830  Aasi_0769  Holliday junction resolvase  36.76 
 
 
182 aa  140  1.9999999999999998e-32  Candidatus Amoebophilus asiaticus 5a2  Bacteria  n/a    normal 
 
 
-
 
NC_009457  VC0395_A1438  Holliday junction resolvase  49.34 
 
 
173 aa  139  1.9999999999999998e-32  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000000000786785  n/a   
 
 
-
 
NC_013132  Cpin_1243  crossover junction endodeoxyribonuclease RuvC  37.3 
 
 
202 aa  137  6e-32  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_003924  crossover junction endodeoxyribonuclease RuvC  47.65 
 
 
173 aa  137  6e-32  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00124897  n/a   
 
 
-
 
NC_013162  Coch_0079  Holliday junction resolvase  36.41 
 
 
181 aa  135  3.0000000000000003e-31  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3314  Holliday junction resolvase  44.17 
 
 
164 aa  135  3.0000000000000003e-31  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0995  crossover junction endodeoxyribonuclease RuvC  43.9 
 
 
183 aa  134  9.999999999999999e-31  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.410626  normal 
 
 
-
 
NC_012918  GM21_0932  Holliday junction resolvase  46 
 
 
164 aa  133  1.9999999999999998e-30  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000000000000174044 
 
 
-
 
NC_013216  Dtox_1109  Holliday junction resolvase  42.67 
 
 
159 aa  132  3.9999999999999996e-30  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.000000183978  normal 
 
 
-
 
NC_002950  PG1324  Holliday junction resolvase  38.22 
 
 
189 aa  130  1.0000000000000001e-29  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_009439  Pmen_1270  Holliday junction resolvase  44.12 
 
 
174 aa  130  1.0000000000000001e-29  Pseudomonas mendocina ymp  Bacteria  normal  0.460583  normal  0.748169 
 
 
-
 
NC_008740  Maqu_1706  crossover junction endodeoxyribonuclease RuvC  50 
 
 
175 aa  130  1.0000000000000001e-29  Marinobacter aquaeolei VT8  Bacteria  normal  0.0826466  n/a   
 
 
-
 
NC_009253  Dred_1660  crossover junction endodeoxyribonuclease RuvC  39.33 
 
 
163 aa  129  2.0000000000000002e-29  Desulfotomaculum reducens MI-1  Bacteria  normal  0.183319  n/a   
 
 
-
 
NC_012034  Athe_1114  Holliday junction resolvase  39.1 
 
 
164 aa  129  2.0000000000000002e-29  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1747  Holliday junction resolvase  47.37 
 
 
170 aa  130  2.0000000000000002e-29  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.607448  normal  0.595925 
 
 
-
 
NC_007005  Psyr_1408  Holliday junction resolvase  46.31 
 
 
174 aa  128  4.0000000000000003e-29  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0741674  normal 
 
 
-
 
NC_004578  PSPTO_3979  crossover junction endodeoxyribonuclease RuvC  46 
 
 
176 aa  127  8.000000000000001e-29  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.175883  n/a   
 
 
-
 
NC_008609  Ppro_2672  Holliday junction resolvase  42.94 
 
 
176 aa  127  8.000000000000001e-29  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00163378  n/a   
 
 
-
 
NC_007492  Pfl01_4409  Holliday junction resolvase  44.67 
 
 
175 aa  126  2.0000000000000002e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.049138  normal 
 
 
-
 
NC_007517  Gmet_0744  Holliday junction resolvase  42.94 
 
 
164 aa  126  2.0000000000000002e-28  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.000123972  normal 
 
 
-
 
NC_011883  Ddes_0740  Holliday junction resolvase  41.18 
 
 
173 aa  126  2.0000000000000002e-28  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.100777  n/a   
 
 
-
 
NC_009483  Gura_1415  Holliday junction resolvase  44.67 
 
 
171 aa  126  2.0000000000000002e-28  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00000523238  n/a   
 
 
-
 
NC_012880  Dd703_2157  Holliday junction resolvase  47.79 
 
 
173 aa  125  3e-28  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2182  Holliday junction resolvase  45.7 
 
 
173 aa  125  3e-28  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.64085  n/a   
 
 
-
 
NC_008463  PA14_51800  Holliday junction resolvase  44.3 
 
 
174 aa  125  3e-28  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000486306 
 
 
-
 
NC_011769  DvMF_3202  Holliday junction resolvase  43.92 
 
 
197 aa  125  4.0000000000000003e-28  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.0673445 
 
 
-
 
NC_009656  PSPA7_4543  Holliday junction resolvase  44.3 
 
 
174 aa  125  4.0000000000000003e-28  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1075  Holliday junction resolvase  45.33 
 
 
164 aa  125  5e-28  Geobacter sulfurreducens PCA  Bacteria  normal  0.228203  n/a   
 
 
-
 
NC_011899  Hore_12330  crossover junction endodeoxyribonuclease RuvC  38.67 
 
 
165 aa  125  5e-28  Halothermothrix orenii H 168  Bacteria  normal  0.128626  n/a   
 
 
-
 
NC_008309  HS_0509  Holliday junction resolvase  47.06 
 
 
189 aa  124  6e-28  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1346  Holliday junction resolvase  38 
 
 
166 aa  124  7e-28  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.000000795843  n/a   
 
 
-
 
NC_008709  Ping_0716  crossover junction endodeoxyribonuclease RuvC  41.61 
 
 
173 aa  124  9e-28  Psychromonas ingrahamii 37  Bacteria  normal  0.075927  normal  0.655045 
 
 
-
 
NC_008009  Acid345_3618  crossover junction endodeoxyribonuclease RuvC  45.1 
 
 
166 aa  124  1e-27  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.1831  normal  0.457471 
 
 
-
 
NC_009441  Fjoh_1377  Holliday junction resolvase  34.24 
 
 
184 aa  123  1e-27  Flavobacterium johnsoniae UW101  Bacteria  normal  0.180632  n/a   
 
 
-
 
NC_009708  YpsIP31758_2032  Holliday junction resolvase  49.26 
 
 
173 aa  123  2e-27  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.000234301  n/a   
 
 
-
 
NC_013501  Rmar_2400  crossover junction endodeoxyribonuclease RuvC  36.76 
 
 
191 aa  123  2e-27  Rhodothermus marinus DSM 4252  Bacteria  normal  0.553379  n/a   
 
 
-
 
NC_012917  PC1_1818  Holliday junction resolvase  45.59 
 
 
173 aa  123  2e-27  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.311556  n/a   
 
 
-
 
NC_010159  YpAngola_A2423  Holliday junction resolvase  49.26 
 
 
173 aa  123  2e-27  Yersinia pestis Angola  Bacteria  normal  0.0385722  normal  0.655907 
 
 
-
 
NC_010465  YPK_2145  Holliday junction resolvase  49.26 
 
 
173 aa  123  2e-27  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.25841  n/a   
 
 
-
 
NC_012912  Dd1591_2259  Holliday junction resolvase  46.32 
 
 
173 aa  122  3e-27  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2102  Holliday junction resolvase  45.59 
 
 
173 aa  122  3e-27  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_2024  crossover junction endodeoxyribonuclease RuvC  37.21 
 
 
174 aa  121  5e-27  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.270217  normal 
 
 
-
 
NC_009712  Mboo_0111  Holliday junction resolvase  42.76 
 
 
156 aa  121  7e-27  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_007973  Rmet_0426  Holliday junction resolvase  43.33 
 
 
181 aa  121  7e-27  Cupriavidus metallidurans CH34  Bacteria  normal  0.633574  normal  0.046933 
 
 
-
 
NC_009436  Ent638_2431  Holliday junction resolvase  46.32 
 
 
173 aa  120  8e-27  Enterobacter sp. 638  Bacteria  normal  0.0114674  normal 
 
 
-
 
NC_007796  Mhun_0890  Holliday junction resolvase  38 
 
 
164 aa  120  9e-27  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.0795494 
 
 
-
 
NC_007204  Psyc_0699  Holliday junction resolvase  43.51 
 
 
194 aa  120  9.999999999999999e-27  Psychrobacter arcticus 273-4  Bacteria  normal  0.207762  normal 
 
 
-
 
NC_007519  Dde_2324  Holliday junction resolvase  44.44 
 
 
166 aa  120  9.999999999999999e-27  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.747333  n/a   
 
 
-
 
NC_007969  Pcryo_0671  Holliday junction resolvase  43.51 
 
 
194 aa  120  9.999999999999999e-27  Psychrobacter cryohalolentis K5  Bacteria  normal  0.674635  normal 
 
 
-
 
NC_010320  Teth514_1452  Holliday junction resolvase  39.33 
 
 
182 aa  120  9.999999999999999e-27  Thermoanaerobacter sp. X514  Bacteria  normal  0.883917  n/a   
 
 
-
 
NC_013171  Apre_0903  crossover junction endodeoxyribonuclease RuvC  34.57 
 
 
164 aa  119  1.9999999999999998e-26  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_2778  Holliday junction resolvase  45.59 
 
 
173 aa  119  1.9999999999999998e-26  Serratia proteamaculans 568  Bacteria  normal  0.0426005  normal  0.0283844 
 
 
-
 
NC_011830  Dhaf_3627  Holliday junction resolvase  39.33 
 
 
165 aa  120  1.9999999999999998e-26  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00535771  n/a   
 
 
-
 
NC_008751  Dvul_0987  Holliday junction resolvase  39.87 
 
 
166 aa  119  1.9999999999999998e-26  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.221378 
 
 
-
 
NC_007984  BCI_0314  crossover junction endodeoxyribonuclease RuvC  43.38 
 
 
173 aa  119  3e-26  Baumannia cicadellinicola str. Hc (Homalodisca coagulata)  Bacteria  normal  0.290454  n/a   
 
 
-
 
NC_002977  MCA1221  crossover junction endodeoxyribonuclease RuvC  44 
 
 
165 aa  119  3.9999999999999996e-26  Methylococcus capsulatus str. Bath  Bacteria  normal  0.69785  n/a   
 
 
-
 
NC_008599  CFF8240_1822  Holliday junction resolvase  40.94 
 
 
157 aa  119  3.9999999999999996e-26  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.21855  n/a   
 
 
-
 
NC_009012  Cthe_0180  Holliday junction resolvase  36.67 
 
 
162 aa  118  4.9999999999999996e-26  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1846  crossover junction endodeoxyribonuclease RuvC  44.85 
 
 
186 aa  118  6e-26  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.018832  n/a   
 
 
-
 
NC_011205  SeD_A1349  Holliday junction resolvase  46.32 
 
 
173 aa  117  9e-26  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  hitchhiker  0.00353939 
 
 
-
 
NC_011094  SeSA_A2052  Holliday junction resolvase  46.32 
 
 
173 aa  117  9e-26  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A2057  Holliday junction resolvase  46.32 
 
 
173 aa  117  9e-26  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.0681914 
 
 
-
 
NC_011149  SeAg_B1225  Holliday junction resolvase  46.32 
 
 
173 aa  117  9e-26  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.177509  n/a   
 
 
-
 
NC_011083  SeHA_C2112  Holliday junction resolvase  46.32 
 
 
173 aa  117  9e-26  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.0214105 
 
 
-
 
NC_010682  Rpic_0379  Holliday junction resolvase  40.67 
 
 
181 aa  117  9.999999999999999e-26  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_2364  Holliday junction resolvase  45.39 
 
 
173 aa  117  9.999999999999999e-26  Shewanella pealeana ATCC 700345  Bacteria  decreased coverage  0.00103097  n/a   
 
 
-
 
NC_013385  Adeg_1632  crossover junction endodeoxyribonuclease RuvC  38.16 
 
 
160 aa  117  9.999999999999999e-26  Ammonifex degensii KC4  Bacteria  normal  0.286173  n/a   
 
 
-
 
NC_009801  EcE24377A_2093  Holliday junction resolvase  46.32 
 
 
173 aa  117  9.999999999999999e-26  Escherichia coli E24377A  Bacteria  hitchhiker  0.00029798  n/a   
 
 
-
 
NC_003910  CPS_2115  crossover junction endodeoxyribonuclease RuvC  44.53 
 
 
175 aa  116  1.9999999999999998e-25  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_04920  Holliday junction resolvase  32.8 
 
 
184 aa  116  1.9999999999999998e-25  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_01834  Holliday junction resolvase  45.59 
 
 
173 aa  115  3e-25  Escherichia coli BL21(DE3)  Bacteria  normal  0.837934  n/a   
 
 
-
 
CP001637  EcDH1_1777  crossover junction endodeoxyribonuclease RuvC  45.59 
 
 
173 aa  115  3e-25  Escherichia coli DH1  Bacteria  hitchhiker  0.00202932  n/a   
 
 
-
 
NC_010498  EcSMS35_1323  Holliday junction resolvase  45.59 
 
 
173 aa  115  3e-25  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_01822  hypothetical protein  45.59 
 
 
173 aa  115  3e-25  Escherichia coli BL21  Bacteria  normal  0.621329  n/a   
 
 
-
 
NC_010468  EcolC_1769  Holliday junction resolvase  45.59 
 
 
173 aa  115  3e-25  Escherichia coli ATCC 8739  Bacteria  normal  0.0125353  normal 
 
 
-
 
NC_009800  EcHS_A1956  Holliday junction resolvase  45.59 
 
 
173 aa  115  3e-25  Escherichia coli HS  Bacteria  normal  0.396234  n/a   
 
 
-
 
NC_010658  SbBS512_E1109  Holliday junction resolvase  45.59 
 
 
173 aa  115  3e-25  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_0394  Holliday junction resolvase  40.67 
 
 
181 aa  115  3e-25  Ralstonia pickettii 12D  Bacteria  normal  normal  0.638558 
 
 
-
 
NC_011353  ECH74115_2599  Holliday junction resolvase  45.59 
 
 
173 aa  115  3e-25  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.109079  normal 
 
 
-
 
NC_002947  PP_1215  Holliday junction resolvase  44.97 
 
 
174 aa  115  3.9999999999999997e-25  Pseudomonas putida KT2440  Bacteria  normal  0.0458654  normal 
 
 
-
 
NC_007484  Noc_0138  crossover junction endodeoxyribonuclease RuvC  45.52 
 
 
174 aa  115  3.9999999999999997e-25  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2946  Holliday junction resolvase  44.12 
 
 
173 aa  115  3.9999999999999997e-25  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.185202  n/a   
 
 
-
 
NC_008346  Swol_1433  hypothetical protein  41.45 
 
 
172 aa  115  3.9999999999999997e-25  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  hitchhiker  0.000000864662  n/a   
 
 
-
 
NC_009379  Pnuc_1878  Holliday junction resolvase  43.71 
 
 
172 aa  115  3.9999999999999997e-25  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  hitchhiker  0.00784729  n/a   
 
 
-
 
NC_010322  PputGB1_4203  Holliday junction resolvase  44.97 
 
 
174 aa  115  5e-25  Pseudomonas putida GB-1  Bacteria  normal  0.0438295  normal 
 
 
-
 
NC_009512  Pput_1244  Holliday junction resolvase  44.97 
 
 
174 aa  115  5e-25  Pseudomonas putida F1  Bacteria  normal  0.61539  normal 
 
 
-
 
NC_009524  PsycPRwf_1433  Holliday junction resolvase  42.58 
 
 
194 aa  114  7.999999999999999e-25  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
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