289 homologs were found in PanDaTox collection
for query gene Pnuc_0613 on replicon NC_009379
Organism: Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009379  Pnuc_0613  rRNA large subunit methyltransferase  100 
 
 
147 aa  303  5.0000000000000004e-82  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_010531  Pnec_1242  rRNA large subunit methyltransferase  88.44 
 
 
135 aa  255  1e-67  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1296  rRNA large subunit methyltransferase  60.65 
 
 
156 aa  193  6e-49  Burkholderia phytofirmans PsJN  Bacteria  normal  0.433807  normal  0.073248 
 
 
-
 
NC_012856  Rpic12D_1993  rRNA large subunit methyltransferase  60.65 
 
 
156 aa  192  2e-48  Ralstonia pickettii 12D  Bacteria  normal  0.350093  normal  0.83098 
 
 
-
 
NC_010682  Rpic_2393  rRNA large subunit methyltransferase  60 
 
 
156 aa  191  4e-48  Ralstonia pickettii 12J  Bacteria  normal  0.147472  normal 
 
 
-
 
NC_007951  Bxe_A3264  rRNA large subunit methyltransferase  59.35 
 
 
156 aa  190  6e-48  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_2069  rRNA large subunit methyltransferase  59.35 
 
 
156 aa  189  1e-47  Burkholderia phymatum STM815  Bacteria  normal  0.608211  normal  0.214177 
 
 
-
 
NC_008390  Bamb_2337  rRNA large subunit methyltransferase  57.42 
 
 
156 aa  188  2e-47  Burkholderia ambifaria AMMD  Bacteria  normal  0.390809  n/a   
 
 
-
 
NC_007510  Bcep18194_A5626  rRNA large subunit methyltransferase  57.42 
 
 
156 aa  187  2.9999999999999997e-47  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_2322  rRNA large subunit methyltransferase  57.42 
 
 
156 aa  187  2.9999999999999997e-47  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.810756  normal  0.749932 
 
 
-
 
NC_008060  Bcen_1687  rRNA large subunit methyltransferase  57.42 
 
 
156 aa  187  2.9999999999999997e-47  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_2299  rRNA large subunit methyltransferase  57.42 
 
 
156 aa  187  2.9999999999999997e-47  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0979  rRNA large subunit methyltransferase  57.42 
 
 
156 aa  187  4e-47  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0495213  normal 
 
 
-
 
NC_007651  BTH_I1010  rRNA large subunit methyltransferase  57.42 
 
 
156 aa  186  7e-47  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_2216  rRNA large subunit methyltransferase  56.77 
 
 
156 aa  186  8e-47  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc2195  rRNA large subunit methyltransferase  57.42 
 
 
156 aa  184  4e-46  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_009074  BURPS668_1226  rRNA large subunit methyltransferase  56.13 
 
 
156 aa  183  7e-46  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA1889  rRNA large subunit methyltransferase  56.13 
 
 
156 aa  183  7e-46  Burkholderia mallei ATCC 23344  Bacteria  normal  0.841126  n/a   
 
 
-
 
NC_007434  BURPS1710b_1379  rRNA large subunit methyltransferase  56.13 
 
 
156 aa  183  7e-46  Burkholderia pseudomallei 1710b  Bacteria  normal  0.588338  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1070  rRNA large subunit methyltransferase  56.13 
 
 
156 aa  183  7e-46  Burkholderia mallei SAVP1  Bacteria  normal  0.503879  n/a   
 
 
-
 
NC_008836  BMA10229_A0797  rRNA large subunit methyltransferase  56.13 
 
 
156 aa  183  7e-46  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_0353  rRNA large subunit methyltransferase  56.13 
 
 
156 aa  183  7e-46  Burkholderia mallei NCTC 10247  Bacteria  normal  0.389517  n/a   
 
 
-
 
NC_009076  BURPS1106A_1235  rRNA large subunit methyltransferase  56.13 
 
 
156 aa  183  7e-46  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_0780  rRNA large subunit methyltransferase  55.06 
 
 
159 aa  182  2.0000000000000003e-45  Cupriavidus metallidurans CH34  Bacteria  normal  0.329962  normal  0.230436 
 
 
-
 
NC_010002  Daci_3525  rRNA large subunit methyltransferase  51.61 
 
 
155 aa  166  9e-41  Delftia acidovorans SPH-1  Bacteria  normal  0.144296  normal  0.0487834 
 
 
-
 
NC_007347  Reut_A2527  rRNA large subunit methyltransferase  54.43 
 
 
159 aa  164  4e-40  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_3199  rRNA large subunit methyltransferase  51.61 
 
 
155 aa  164  5e-40  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0492492  normal 
 
 
-
 
NC_007948  Bpro_1973  rRNA large subunit methyltransferase  52.26 
 
 
155 aa  163  5.9999999999999996e-40  Polaromonas sp. JS666  Bacteria  normal  normal  0.597244 
 
 
-
 
NC_012791  Vapar_2688  rRNA large subunit methyltransferase  51.61 
 
 
155 aa  161  2.0000000000000002e-39  Variovorax paradoxus S110  Bacteria  normal  0.169878  n/a   
 
 
-
 
NC_008782  Ajs_1902  rRNA large subunit methyltransferase  50.97 
 
 
155 aa  161  3e-39  Acidovorax sp. JS42  Bacteria  normal  0.0816634  normal  0.498603 
 
 
-
 
NC_007908  Rfer_2080  rRNA large subunit methyltransferase  52.26 
 
 
155 aa  160  4.0000000000000004e-39  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2624  rRNA large subunit methyltransferase  50.97 
 
 
155 aa  160  7e-39  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0866518  normal  0.117363 
 
 
-
 
NC_007298  Daro_0171  rRNA large subunit methyltransferase  49.68 
 
 
156 aa  159  8.000000000000001e-39  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_1707  rRNA large subunit methyltransferase  50.32 
 
 
155 aa  160  8.000000000000001e-39  Acidovorax ebreus TPSY  Bacteria  normal  0.11098  n/a   
 
 
-
 
NC_008781  Pnap_1733  rRNA large subunit methyltransferase  51.61 
 
 
155 aa  158  2e-38  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A1342  rRNA large subunit methyltransferase  50.64 
 
 
156 aa  156  9e-38  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_2439  hypothetical protein  50.64 
 
 
173 aa  155  1e-37  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A0362  hypothetical protein  46.45 
 
 
156 aa  154  3e-37  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0592  rRNA large subunit methyltransferase  50.32 
 
 
155 aa  154  4e-37  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.338399 
 
 
-
 
NC_013422  Hneap_1738  protein of unknown function DUF163  45.51 
 
 
156 aa  153  6e-37  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1948  rRNA large subunit methyltransferase  46.79 
 
 
156 aa  149  8e-36  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009654  Mmwyl1_2849  hypothetical protein  45.16 
 
 
155 aa  147  5e-35  Marinomonas sp. MWYL1  Bacteria  normal  0.158377  hitchhiker  0.0000000861677 
 
 
-
 
NC_008740  Maqu_2414  hypothetical protein  45.81 
 
 
156 aa  145  1.0000000000000001e-34  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00000142803  n/a   
 
 
-
 
NC_007963  Csal_1544  hypothetical protein  47.1 
 
 
155 aa  144  3e-34  Chromohalobacter salexigens DSM 3043  Bacteria  decreased coverage  0.00441553  n/a   
 
 
-
 
NC_010506  Swoo_3707  rRNA large subunit methyltransferase  46.15 
 
 
156 aa  144  5e-34  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000116859  decreased coverage  0.000000222893 
 
 
-
 
NC_009092  Shew_2934  rRNA large subunit methyltransferase  46.79 
 
 
156 aa  144  6e-34  Shewanella loihica PV-4  Bacteria  decreased coverage  0.000000178909  decreased coverage  0.00747753 
 
 
-
 
NC_011138  MADE_01658  rRNA large subunit methyltransferase  44.23 
 
 
156 aa  143  8.000000000000001e-34  Alteromonas macleodii 'Deep ecotype'  Bacteria  hitchhiker  0.000106355  n/a   
 
 
-
 
NC_012880  Dd703_1093  rRNA large subunit methyltransferase  45.51 
 
 
156 aa  143  8.000000000000001e-34  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_2273  SPOUT methyltransferase superfamily protein  42.95 
 
 
156 aa  142  1e-33  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.246773  n/a   
 
 
-
 
NC_012912  Dd1591_2963  rRNA large subunit methyltransferase  46.15 
 
 
156 aa  142  1e-33  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3149  rRNA large subunit methyltransferase  46.15 
 
 
156 aa  142  2e-33  Pectobacterium wasabiae WPP163  Bacteria  normal  0.788661  n/a   
 
 
-
 
NC_012917  PC1_1182  rRNA large subunit methyltransferase  46.15 
 
 
156 aa  142  2e-33  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.159956  n/a   
 
 
-
 
NC_009832  Spro_1202  hypothetical protein  46.15 
 
 
156 aa  141  2e-33  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_3822  rRNA large subunit methyltransferase  44.23 
 
 
156 aa  140  4e-33  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3484  rRNA large subunit methyltransferase  44.87 
 
 
156 aa  141  4e-33  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000336055  unclonable  0.0000000000393257 
 
 
-
 
NC_013889  TK90_2126  protein of unknown function DUF163  42.58 
 
 
156 aa  140  5e-33  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.933959  normal  0.0354668 
 
 
-
 
NC_008700  Sama_2587  rRNA large subunit methyltransferase  44.87 
 
 
156 aa  140  6e-33  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.00000227435  normal  0.158924 
 
 
-
 
NC_009052  Sbal_3274  rRNA large subunit methyltransferase  44.23 
 
 
156 aa  139  9e-33  Shewanella baltica OS155  Bacteria  unclonable  0.000000000453128  n/a   
 
 
-
 
NC_011663  Sbal223_1093  rRNA large subunit methyltransferase  44.23 
 
 
156 aa  139  9e-33  Shewanella baltica OS223  Bacteria  unclonable  0.000000000256643  hitchhiker  0.000000000516486 
 
 
-
 
NC_009997  Sbal195_3452  rRNA large subunit methyltransferase  44.23 
 
 
156 aa  139  9e-33  Shewanella baltica OS195  Bacteria  hitchhiker  0.0000535521  hitchhiker  0.00271543 
 
 
-
 
NC_009665  Shew185_3316  rRNA large subunit methyltransferase  44.23 
 
 
156 aa  139  9e-33  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000308815  n/a   
 
 
-
 
NC_007954  Sden_0856  rRNA large subunit methyltransferase  44.87 
 
 
156 aa  139  9.999999999999999e-33  Shewanella denitrificans OS217  Bacteria  unclonable  0.0000000000031317  n/a   
 
 
-
 
NC_011312  VSAL_I0986  rRNA large subunit methyltransferase  44.23 
 
 
156 aa  139  9.999999999999999e-33  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_2659  hypothetical protein  41.94 
 
 
157 aa  139  1.9999999999999998e-32  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0267321  n/a   
 
 
-
 
NC_009901  Spea_3148  rRNA large subunit methyltransferase  44.23 
 
 
156 aa  138  1.9999999999999998e-32  Shewanella pealeana ATCC 700345  Bacteria  unclonable  0.000000000132782  n/a   
 
 
-
 
NC_010159  YpAngola_A1847  rRNA large subunit methyltransferase  45.51 
 
 
156 aa  138  1.9999999999999998e-32  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_3020  rRNA large subunit methyltransferase  45.51 
 
 
156 aa  138  1.9999999999999998e-32  Yersinia pseudotuberculosis YPIII  Bacteria  hitchhiker  0.0000384125  n/a   
 
 
-
 
NC_009708  YpsIP31758_2948  rRNA large subunit methyltransferase  45.51 
 
 
156 aa  138  1.9999999999999998e-32  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0113814  n/a   
 
 
-
 
NC_009438  Sputcn32_2868  rRNA large subunit methyltransferase  42.95 
 
 
156 aa  139  1.9999999999999998e-32  Shewanella putrefaciens CN-32  Bacteria  unclonable  0.000000000163704  n/a   
 
 
-
 
NC_003910  CPS_1716  rRNA large subunit methyltransferase  43.59 
 
 
156 aa  138  3e-32  Colwellia psychrerythraea 34H  Bacteria  normal  0.962175  n/a   
 
 
-
 
NC_008322  Shewmr7_1057  rRNA large subunit methyltransferase  42.31 
 
 
156 aa  137  3.9999999999999997e-32  Shewanella sp. MR-7  Bacteria  hitchhiker  0.0000490967  hitchhiker  0.00601071 
 
 
-
 
NC_009457  VC0395_A0474  rRNA large subunit methyltransferase  43.59 
 
 
156 aa  137  6e-32  Vibrio cholerae O395  Bacteria  normal  0.0372612  n/a   
 
 
-
 
NC_002977  MCA0377  rRNA large subunit methyltransferase  41.29 
 
 
155 aa  137  7e-32  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_0992  rRNA large subunit methyltransferase  42.31 
 
 
156 aa  137  7e-32  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000000354968  normal  0.0933085 
 
 
-
 
NC_008577  Shewana3_0996  rRNA large subunit methyltransferase  42.31 
 
 
156 aa  137  7e-32  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000270066  normal  0.150944 
 
 
-
 
NC_004347  SO_1169  rRNA large subunit methyltransferase  41.67 
 
 
156 aa  135  1e-31  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007520  Tcr_0486  hypothetical protein  44.52 
 
 
145 aa  136  1e-31  Thiomicrospira crunogena XCL-2  Bacteria  decreased coverage  0.0000000000000178654  n/a   
 
 
-
 
NC_008345  Sfri_0700  rRNA large subunit methyltransferase  42.95 
 
 
156 aa  135  1e-31  Shewanella frigidimarina NCIMB 400  Bacteria  decreased coverage  0.00000000637083  n/a   
 
 
-
 
NC_011083  SeHA_C0757  rRNA large subunit methyltransferase  44.72 
 
 
155 aa  135  2e-31  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  hitchhiker  0.00922876  normal 
 
 
-
 
NC_011094  SeSA_A0801  rRNA large subunit methyltransferase  44.72 
 
 
155 aa  135  2e-31  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  decreased coverage  0.000227115  normal 
 
 
-
 
NC_011205  SeD_A0743  rRNA large subunit methyltransferase  44.72 
 
 
155 aa  135  2e-31  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  hitchhiker  0.000786877  normal 
 
 
-
 
NC_011080  SNSL254_A0697  rRNA large subunit methyltransferase  44.72 
 
 
155 aa  135  2e-31  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  hitchhiker  0.00566103  normal 
 
 
-
 
NC_011149  SeAg_B0683  rRNA large subunit methyltransferase  44.72 
 
 
155 aa  135  2e-31  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  decreased coverage  0.00000000000302367  n/a   
 
 
-
 
NC_009783  VIBHAR_01218  rRNA large subunit methyltransferase  42.31 
 
 
156 aa  135  3.0000000000000003e-31  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
CP001509  ECD_00605  hypothetical protein  44.1 
 
 
155 aa  132  9.999999999999999e-31  Escherichia coli BL21(DE3)  Bacteria  hitchhiker  0.000332715  n/a   
 
 
-
 
CP001637  EcDH1_2990  protein of unknown function DUF163  44.1 
 
 
155 aa  132  9.999999999999999e-31  Escherichia coli DH1  Bacteria  hitchhiker  0.0000000000000047133  n/a   
 
 
-
 
NC_002947  PP_4808  rRNA large subunit methyltransferase  41.03 
 
 
155 aa  132  9.999999999999999e-31  Pseudomonas putida KT2440  Bacteria  normal  normal  0.24458 
 
 
-
 
NC_009801  EcE24377A_0662  rRNA large subunit methyltransferase  44.1 
 
 
155 aa  132  9.999999999999999e-31  Escherichia coli E24377A  Bacteria  hitchhiker  0.0000000000637947  n/a   
 
 
-
 
NC_010658  SbBS512_E0615  rRNA large subunit methyltransferase  44.1 
 
 
155 aa  132  9.999999999999999e-31  Shigella boydii CDC 3083-94  Bacteria  decreased coverage  0.0000000000000121913  n/a   
 
 
-
 
NC_010498  EcSMS35_0656  rRNA large subunit methyltransferase  44.1 
 
 
155 aa  132  9.999999999999999e-31  Escherichia coli SMS-3-5  Bacteria  unclonable  0.000000000108281  normal 
 
 
-
 
NC_009800  EcHS_A0688  rRNA large subunit methyltransferase  44.1 
 
 
155 aa  132  9.999999999999999e-31  Escherichia coli HS  Bacteria  hitchhiker  0.0000000000000154252  n/a   
 
 
-
 
NC_011353  ECH74115_0725  rRNA large subunit methyltransferase  44.1 
 
 
155 aa  132  9.999999999999999e-31  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.000000708993  normal  0.106325 
 
 
-
 
NC_009512  Pput_4683  rRNA large subunit methyltransferase  41.03 
 
 
155 aa  132  9.999999999999999e-31  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_3009  rRNA large subunit methyltransferase  44.1 
 
 
155 aa  132  9.999999999999999e-31  Escherichia coli ATCC 8739  Bacteria  hitchhiker  0.000000239477  normal 
 
 
-
 
NC_012892  B21_00594  hypothetical protein  44.1 
 
 
155 aa  132  9.999999999999999e-31  Escherichia coli BL21  Bacteria  hitchhiker  0.000243444  n/a   
 
 
-
 
NC_004578  PSPTO_4826  hypothetical protein  39.74 
 
 
155 aa  131  3e-30  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.715352  n/a   
 
 
-
 
NC_007005  Psyr_4366  rRNA large subunit methyltransferase  39.74 
 
 
155 aa  131  3e-30  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.712545  normal  0.959916 
 
 
-
 
NC_007912  Sde_3342  rRNA large subunit methyltransferase  41.94 
 
 
155 aa  131  3e-30  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.000000127948  normal  0.0166889 
 
 
-
 
NC_010322  PputGB1_4861  rRNA large subunit methyltransferase  40.38 
 
 
155 aa  131  3e-30  Pseudomonas putida GB-1  Bacteria  normal  0.394825  normal 
 
 
-
 
NC_010501  PputW619_0613  rRNA large subunit methyltransferase  40.38 
 
 
155 aa  130  3.9999999999999996e-30  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>