More than 300 homologs were found in PanDaTox collection
for query gene Pnap_3894 on replicon NC_008781
Organism: Polaromonas naphthalenivorans CJ2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008781  Pnap_3894  response regulator receiver protein  100 
 
 
208 aa  419  1e-116  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.52621  normal  0.385193 
 
 
-
 
NC_007948  Bpro_4652  two component LuxR family transcriptional regulator  85.1 
 
 
208 aa  351  4e-96  Polaromonas sp. JS666  Bacteria  normal  0.398364  normal 
 
 
-
 
NC_008752  Aave_4653  two component LuxR family transcriptional regulator  71.98 
 
 
209 aa  291  5e-78  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_4829  response regulator receiver protein  72.33 
 
 
209 aa  288  3e-77  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.352064  normal  0.347274 
 
 
-
 
NC_010002  Daci_0846  two component LuxR family transcriptional regulator  69.08 
 
 
209 aa  280  1e-74  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_4015  response regulator receiver protein  69.3 
 
 
216 aa  270  1e-71  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_3365  two component transcriptional regulator, LuxR family  69.3 
 
 
216 aa  269  2e-71  Acidovorax ebreus TPSY  Bacteria  normal  0.7758  n/a   
 
 
-
 
NC_012791  Vapar_5156  two component transcriptional regulator, LuxR family  68.75 
 
 
208 aa  268  2.9999999999999997e-71  Variovorax paradoxus S110  Bacteria  normal  0.497351  n/a   
 
 
-
 
NC_008825  Mpe_A0209  two component LuxR family transcriptional regulator  60.1 
 
 
225 aa  238  4e-62  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.641351 
 
 
-
 
NC_007298  Daro_2996  LuxR response regulator receiver  55.56 
 
 
198 aa  214  9.999999999999999e-55  Dechloromonas aromatica RCB  Bacteria  normal  0.437807  normal 
 
 
-
 
NC_010524  Lcho_3918  two component LuxR family transcriptional regulator  59.69 
 
 
215 aa  211  4.9999999999999996e-54  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011662  Tmz1t_3400  two component transcriptional regulator, LuxR family  48.78 
 
 
201 aa  194  8.000000000000001e-49  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_3683  two component LuxR family transcriptional regulator  48.77 
 
 
205 aa  171  5e-42  Burkholderia multivorans ATCC 17616  Bacteria  hitchhiker  0.00690698  normal  0.306381 
 
 
-
 
NC_009428  Rsph17025_0245  response regulator receiver protein  48.76 
 
 
202 aa  169  3e-41  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_1779  response regulator receiver protein  42.35 
 
 
208 aa  168  5e-41  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.264941  hitchhiker  0.00228897 
 
 
-
 
NC_009049  Rsph17029_2567  response regulator receiver protein  46 
 
 
202 aa  167  1e-40  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.94208 
 
 
-
 
NC_007493  RSP_0907  two component LuxR family transcriptional regulator  46 
 
 
202 aa  167  1e-40  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.285724  n/a   
 
 
-
 
NC_007948  Bpro_2674  two component LuxR family transcriptional regulator  40.82 
 
 
208 aa  166  2.9999999999999998e-40  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3240  two component LuxR family transcriptional regulator  43.37 
 
 
207 aa  164  8e-40  Shewanella loihica PV-4  Bacteria  normal  normal  0.989265 
 
 
-
 
NC_007298  Daro_3108  LuxR response regulator receiver  48.21 
 
 
202 aa  164  1.0000000000000001e-39  Dechloromonas aromatica RCB  Bacteria  normal  0.786061  normal 
 
 
-
 
NC_007908  Rfer_1486  two component LuxR family transcriptional regulator  46.41 
 
 
214 aa  164  1.0000000000000001e-39  Rhodoferax ferrireducens T118  Bacteria  normal  0.108748  n/a   
 
 
-
 
NC_008781  Pnap_3745  response regulator receiver protein  45.45 
 
 
203 aa  162  3e-39  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.311585 
 
 
-
 
NC_012791  Vapar_2160  two component transcriptional regulator, LuxR family  41.84 
 
 
210 aa  162  4.0000000000000004e-39  Variovorax paradoxus S110  Bacteria  normal  0.563306  n/a   
 
 
-
 
NC_010322  PputGB1_2371  two component LuxR family transcriptional regulator  46.77 
 
 
209 aa  161  8.000000000000001e-39  Pseudomonas putida GB-1  Bacteria  normal  0.820742  normal 
 
 
-
 
NC_008825  Mpe_A2130  two component LuxR family transcriptional regulator  42.35 
 
 
207 aa  160  1e-38  Methylibium petroleiphilum PM1  Bacteria  normal  0.281977  normal 
 
 
-
 
NC_002947  PP_3551  LuxR family DNA-binding response regulator  46.27 
 
 
210 aa  159  2e-38  Pseudomonas putida KT2440  Bacteria  normal  0.178316  normal 
 
 
-
 
NC_009512  Pput_2223  response regulator receiver protein  46.27 
 
 
210 aa  159  2e-38  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_3982  two component LuxR family transcriptional regulator  40.82 
 
 
216 aa  160  2e-38  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.0179399 
 
 
-
 
NC_008782  Ajs_2127  two component LuxR family transcriptional regulator  40.31 
 
 
208 aa  158  5e-38  Acidovorax sp. JS42  Bacteria  normal  0.583598  normal  0.797665 
 
 
-
 
NC_011992  Dtpsy_1655  two component transcriptional regulator, LuxR family  40.31 
 
 
208 aa  158  5e-38  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2210  two component LuxR family transcriptional regulator  39.7 
 
 
208 aa  158  5e-38  Rhodoferax ferrireducens T118  Bacteria  normal  0.891166  n/a   
 
 
-
 
NC_008752  Aave_2460  two component LuxR family transcriptional regulator  39.8 
 
 
208 aa  158  7e-38  Acidovorax citrulli AAC00-1  Bacteria  normal  0.293905  normal 
 
 
-
 
NC_007347  Reut_A1301  LuxR response regulator receiver  42.93 
 
 
210 aa  157  1e-37  Ralstonia eutropha JMP134  Bacteria  normal  0.549132  n/a   
 
 
-
 
NC_008786  Veis_1921  response regulator receiver protein  40.31 
 
 
208 aa  157  1e-37  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.287441  normal  0.0849999 
 
 
-
 
NC_009379  Pnuc_0732  response regulator receiver protein  43.69 
 
 
215 aa  156  3e-37  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.298469  n/a   
 
 
-
 
NC_008391  Bamb_5346  two component LuxR family transcriptional regulator  44.55 
 
 
210 aa  155  5.0000000000000005e-37  Burkholderia ambifaria AMMD  Bacteria  normal  0.0593225  normal  0.752943 
 
 
-
 
NC_007511  Bcep18194_B2505  two component LuxR family transcriptional regulator  44.55 
 
 
210 aa  154  7e-37  Burkholderia sp. 383  Bacteria  normal  0.382458  normal  0.897172 
 
 
-
 
NC_008543  Bcen2424_3610  two component LuxR family transcriptional regulator  44.55 
 
 
210 aa  154  8e-37  Burkholderia cenocepacia HI2424  Bacteria  normal  0.603365  normal 
 
 
-
 
NC_010515  Bcenmc03_3910  two component LuxR family transcriptional regulator  44.55 
 
 
210 aa  154  8e-37  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.855973 
 
 
-
 
NC_010552  BamMC406_3516  two component LuxR family transcriptional regulator  44.06 
 
 
210 aa  154  1e-36  Burkholderia ambifaria MC40-6  Bacteria  normal  0.584359  normal  0.0331166 
 
 
-
 
NC_007973  Rmet_1194  two component LuxR family transcriptional regulator  41.46 
 
 
210 aa  154  1e-36  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00813352  normal  0.892025 
 
 
-
 
NC_007651  BTH_I1862  LuxR family DNA-binding response regulator  42.29 
 
 
212 aa  152  4e-36  Burkholderia thailandensis E264  Bacteria  normal  0.340696  n/a   
 
 
-
 
NC_008740  Maqu_2095  response regulator receiver protein  40.69 
 
 
216 aa  152  5e-36  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_1472  two component LuxR family transcriptional regulator  44.06 
 
 
214 aa  152  5e-36  Burkholderia phymatum STM815  Bacteria  normal  normal  0.781461 
 
 
-
 
NC_010524  Lcho_1644  two component LuxR family transcriptional regulator  39.7 
 
 
207 aa  151  5.9999999999999996e-36  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0578076 
 
 
-
 
NC_008542  Bcen2424_2139  two component LuxR family transcriptional regulator  42.29 
 
 
212 aa  151  8e-36  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A5445  two component LuxR family transcriptional regulator  42.29 
 
 
212 aa  151  8e-36  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_2157  two component LuxR family transcriptional regulator  42.29 
 
 
212 aa  151  8e-36  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_2176  two component LuxR family transcriptional regulator  42.29 
 
 
212 aa  151  8e-36  Burkholderia ambifaria AMMD  Bacteria  normal  0.116055  n/a   
 
 
-
 
NC_008062  Bcen_5938  two component LuxR family transcriptional regulator  41.71 
 
 
212 aa  151  8e-36  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.172889  n/a   
 
 
-
 
NC_010551  BamMC406_2049  two component LuxR family transcriptional regulator  42.29 
 
 
212 aa  151  8e-36  Burkholderia ambifaria MC40-6  Bacteria  normal  0.435361  normal 
 
 
-
 
NC_010084  Bmul_1131  two component LuxR family transcriptional regulator  42.29 
 
 
212 aa  150  1e-35  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0589444  normal  0.612677 
 
 
-
 
NC_006348  BMA1723  LuxR family DNA-binding response regulator  41.79 
 
 
212 aa  150  1e-35  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0901353  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2232  LuxR family DNA-binding response regulator  41.79 
 
 
212 aa  150  1e-35  Burkholderia mallei SAVP1  Bacteria  normal  0.97455  n/a   
 
 
-
 
NC_009076  BURPS1106A_2670  LuxR family DNA-binding response regulator  41.79 
 
 
212 aa  150  1e-35  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2748  LuxR family DNA-binding response regulator  41.79 
 
 
212 aa  150  1e-35  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_2614  LuxR family DNA-binding response regulator  41.79 
 
 
212 aa  150  1e-35  Burkholderia pseudomallei 668  Bacteria  normal  0.37823  n/a   
 
 
-
 
NC_007951  Bxe_A1539  two component LuxR family transcriptional regulator  43.56 
 
 
214 aa  150  1e-35  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.274992 
 
 
-
 
NC_008836  BMA10229_A3087  LuxR family DNA-binding response regulator  41.79 
 
 
212 aa  150  1e-35  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_2593  two component transcriptional regulator, LuxR family  43.56 
 
 
214 aa  150  1e-35  Burkholderia phytofirmans PsJN  Bacteria  normal  0.382122  hitchhiker  0.00235574 
 
 
-
 
NC_009080  BMA10247_1505  LuxR family DNA-binding response regulator  41.79 
 
 
212 aa  150  1e-35  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_5088  two component LuxR family transcriptional regulator  43 
 
 
241 aa  149  2e-35  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.685625 
 
 
-
 
NC_010681  Bphyt_2166  two component transcriptional regulator, LuxR family  41.5 
 
 
220 aa  149  2e-35  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3815  response regulator receiver protein  41.84 
 
 
212 aa  149  3e-35  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_3812  two component LuxR family transcriptional regulator  41.29 
 
 
208 aa  149  4e-35  Dechloromonas aromatica RCB  Bacteria  normal  0.922787  normal  0.026414 
 
 
-
 
NC_011662  Tmz1t_3192  two component transcriptional regulator, LuxR family  43.43 
 
 
212 aa  148  6e-35  Thauera sp. MZ1T  Bacteria  normal  0.513085  n/a   
 
 
-
 
NC_007404  Tbd_1743  two component LuxR family transcriptional regulator  44 
 
 
209 aa  147  1.0000000000000001e-34  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.518394 
 
 
-
 
NC_008463  PA14_09690  putative two-component response regulator  41.71 
 
 
214 aa  146  2.0000000000000003e-34  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.00000807943  normal 
 
 
-
 
NC_010531  Pnec_0704  two component transcriptional regulator, LuxR family  41.38 
 
 
214 aa  146  2.0000000000000003e-34  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  0.753304  normal  0.399327 
 
 
-
 
NC_009656  PSPA7_0903  putative two-component response regulator  41.71 
 
 
212 aa  146  2.0000000000000003e-34  Pseudomonas aeruginosa PA7  Bacteria  normal  0.96795  n/a   
 
 
-
 
NC_007484  Noc_2445  two component LuxR family transcriptional regulator  40.49 
 
 
208 aa  145  4.0000000000000006e-34  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2536  two component regulator  40.38 
 
 
204 aa  144  9e-34  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.378867 
 
 
-
 
NC_008228  Patl_2096  two component LuxR family transcriptional regulator  40.1 
 
 
212 aa  144  1e-33  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0686  two component LuxR family transcriptional regulator  41.26 
 
 
203 aa  143  2e-33  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A0811  two-component response regulator  40.5 
 
 
209 aa  143  2e-33  Methylibium petroleiphilum PM1  Bacteria  normal  0.184612  normal 
 
 
-
 
NC_012560  Avin_25360  Response regulator, LuxR family  40.2 
 
 
246 aa  143  2e-33  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_1701  two component LuxR family transcriptional regulator  42.5 
 
 
201 aa  142  3e-33  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0166117  n/a   
 
 
-
 
NC_003295  RSc1597  response regulator transcription regulator protein  39.61 
 
 
210 aa  142  5e-33  Ralstonia solanacearum GMI1000  Bacteria  normal  0.395881  normal 
 
 
-
 
NC_009997  Sbal195_0467  two component LuxR family transcriptional regulator  39.5 
 
 
200 aa  141  6e-33  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0451  response regulator receiver protein  39.5 
 
 
200 aa  141  7e-33  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1621  two component transcriptional regulator, LuxR family  39.61 
 
 
211 aa  141  8e-33  Ralstonia pickettii 12D  Bacteria  normal  0.171805  normal 
 
 
-
 
NC_008321  Shewmr4_0637  two component LuxR family transcriptional regulator  42.13 
 
 
203 aa  141  8e-33  Shewanella sp. MR-4  Bacteria  normal  hitchhiker  0.0000207768 
 
 
-
 
NC_010682  Rpic_1949  two component transcriptional regulator, LuxR family  39.61 
 
 
211 aa  141  9e-33  Ralstonia pickettii 12J  Bacteria  normal  0.24135  normal  0.0521212 
 
 
-
 
NC_008009  Acid345_3729  two component LuxR family transcriptional regulator  39.71 
 
 
209 aa  140  9.999999999999999e-33  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_6273  response regulator FixJ  43.72 
 
 
204 aa  140  9.999999999999999e-33  Sinorhizobium medicae WSM419  Bacteria  normal  0.664827  normal  0.544702 
 
 
-
 
NC_009485  BBta_2788  response regulator FixJ  41.41 
 
 
205 aa  140  1.9999999999999998e-32  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0210669  normal  0.0766422 
 
 
-
 
NC_010681  Bphyt_2407  two component transcriptional regulator, LuxR family  40.69 
 
 
220 aa  140  1.9999999999999998e-32  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.958584 
 
 
-
 
NC_011666  Msil_2682  two component transcriptional regulator, LuxR family  42 
 
 
222 aa  139  1.9999999999999998e-32  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010515  Bcenmc03_5090  two component LuxR family transcriptional regulator  40.7 
 
 
214 aa  139  1.9999999999999998e-32  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.159727  normal 
 
 
-
 
NC_008543  Bcen2424_5186  two component LuxR family transcriptional regulator  40.7 
 
 
214 aa  139  1.9999999999999998e-32  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.0233056 
 
 
-
 
NC_008061  Bcen_3181  two component LuxR family transcriptional regulator  40.7 
 
 
214 aa  139  1.9999999999999998e-32  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.246114  n/a   
 
 
-
 
NC_011663  Sbal223_0478  two component transcriptional regulator, LuxR family  39 
 
 
200 aa  139  3e-32  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_3866  two component transcriptional regulator, LuxR family  42.42 
 
 
224 aa  139  3e-32  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0317  LuxR family DNA-binding response regulator  41.5 
 
 
250 aa  139  3e-32  Burkholderia thailandensis E264  Bacteria  normal  0.0309445  n/a   
 
 
-
 
NC_010515  Bcenmc03_4219  two component LuxR family transcriptional regulator  43.22 
 
 
212 aa  139  3e-32  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.186755  normal  0.698621 
 
 
-
 
NC_008577  Shewana3_0637  two component LuxR family transcriptional regulator  40.61 
 
 
203 aa  139  3e-32  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.0000059529 
 
 
-
 
NC_007484  Noc_1717  two component LuxR family transcriptional regulator  41 
 
 
205 aa  139  3.9999999999999997e-32  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2041  response regulator receiver protein  41.79 
 
 
214 aa  139  3.9999999999999997e-32  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.212509  hitchhiker  0.00400016 
 
 
-
 
NC_010681  Bphyt_1685  two component transcriptional regulator, LuxR family  40.58 
 
 
215 aa  138  4.999999999999999e-32  Burkholderia phytofirmans PsJN  Bacteria  normal  0.166103  normal  0.907447 
 
 
-
 
NC_009783  VIBHAR_02672  hypothetical protein  42.41 
 
 
198 aa  138  4.999999999999999e-32  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
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