58 homologs were found in PanDaTox collection
for query gene Pnap_2248 on replicon NC_008781
Organism: Polaromonas naphthalenivorans CJ2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008781  Pnap_2248  TP901 family phage tail tape measure protein  100 
 
 
914 aa  1797    Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.678247  hitchhiker  0.00399711 
 
 
-
 
NC_010182  BcerKBAB4_5330  TP901 family phage tail tape measure protein  35.46 
 
 
1127 aa  164  6e-39  Bacillus weihenstephanensis KBAB4  Bacteria  n/a    n/a   
 
 
-
 
NC_011773  BCAH820_4374  phage tail tape measure protein, family, core region  31 
 
 
1549 aa  150  1.0000000000000001e-34  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_008576  Mmc1_1338  TP901 family phage tail tape measure protein  32.8 
 
 
1183 aa  150  1.0000000000000001e-34  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.413563 
 
 
-
 
NC_008576  Mmc1_2562  TP901 family phage tail tape measure protein  32.8 
 
 
1183 aa  150  1.0000000000000001e-34  Magnetococcus sp. MC-1  Bacteria  normal  0.881784  normal  0.265945 
 
 
-
 
NC_008576  Mmc1_2733  TP901 family phage tail tape measure protein  32.8 
 
 
1183 aa  150  1.0000000000000001e-34  Magnetococcus sp. MC-1  Bacteria  normal  0.332181  hitchhiker  0.00107852 
 
 
-
 
NC_008576  Mmc1_1272  TP901 family phage tail tape measure protein  32.8 
 
 
1183 aa  149  2.0000000000000003e-34  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.0574053 
 
 
-
 
NC_008576  Mmc1_2805  TP901 family phage tail tape measure protein  32.17 
 
 
1183 aa  143  9.999999999999999e-33  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_2882  TP901 family phage tail tape measure protein  31.85 
 
 
1183 aa  143  1.9999999999999998e-32  Magnetococcus sp. MC-1  Bacteria  normal  0.143408  normal  0.327483 
 
 
-
 
NC_008576  Mmc1_2034  TP901 family phage tail tape measure protein  31.85 
 
 
1183 aa  142  3e-32  Magnetococcus sp. MC-1  Bacteria  normal  0.5433  normal  0.337313 
 
 
-
 
NC_009487  SaurJH9_1070  TP901 family phage tail tape measure protein  29.92 
 
 
2066 aa  140  1e-31  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.917843  n/a   
 
 
-
 
NC_009632  SaurJH1_1091  TP901 family phage tail tape measure protein  29.92 
 
 
2066 aa  140  1e-31  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_2935  TP901 family phage tail tape measure protein  33.11 
 
 
975 aa  129  2.0000000000000002e-28  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_008265  CPR_C0004  phage tail tape measure protein, TP901 family, core region domain protein  30.47 
 
 
1178 aa  125  4e-27  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_0994  phage tail tape measure protein, TP901 family  32.65 
 
 
1173 aa  117  6.9999999999999995e-25  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_007519  Dde_3386  Phage tail tape measure protein TP901, core region  33.23 
 
 
733 aa  115  4.0000000000000004e-24  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.576804  n/a   
 
 
-
 
NC_009997  Sbal195_2891  TP901 family phage tail tape measure protein  31.76 
 
 
1216 aa  111  5e-23  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_0868  phage tail tape measure protein, TP901 family  28.03 
 
 
981 aa  101  5e-20  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_0550  TP901 family phage tail tape measure protein  32.56 
 
 
969 aa  100  9e-20  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3478  TP901 family phage tail tape measure protein  29.45 
 
 
809 aa  92.8  2e-17  Enterobacter sp. 638  Bacteria  normal  0.790573  normal  0.139413 
 
 
-
 
NC_009674  Bcer98_2586  TP901 family phage tail tape measure protein  32.38 
 
 
1346 aa  93.2  2e-17  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_4245  phage tail tape measure protein, TP901 family  27.98 
 
 
1478 aa  92.8  3e-17  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_4349  TP901 family phage tail tape measure protein  31.74 
 
 
815 aa  90.9  1e-16  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.186092 
 
 
-
 
NC_011353  ECH74115_3026  phage tail tape measure protein, TP901 family  30.67 
 
 
815 aa  89.7  2e-16  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.0149182 
 
 
-
 
NC_010465  YPK_2303  TP901 family phage tail tape measure protein  28.19 
 
 
971 aa  86.7  0.000000000000002  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.841337  n/a   
 
 
-
 
NC_007963  Csal_1375  Phage tail tape measure protein TP901, core region  27.4 
 
 
877 aa  84  0.00000000000001  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A2632  phage tail tape measure protein, family  30.88 
 
 
1283 aa  82.8  0.00000000000002  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_2350  TP901 family phage tail tape measure protein  28.67 
 
 
971 aa  82  0.00000000000005  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.5162  n/a   
 
 
-
 
NC_013440  Hoch_0659  phage tail tape measure protein, TP901 family  29.91 
 
 
936 aa  80.5  0.0000000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_0849  phage tail tape measure protein, TP901 family  29 
 
 
936 aa  80.1  0.0000000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.259729  normal 
 
 
-
 
NC_011080  SNSL254_A4387  gp24  31.34 
 
 
813 aa  79.3  0.0000000000003  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.0182 
 
 
-
 
NC_011772  BCG9842_B2400  phage protein  30.08 
 
 
1297 aa  78.2  0.0000000000006  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_1175  phage tail tape measure protein, TP901 family  36.32 
 
 
1343 aa  78.2  0.0000000000006  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A2248  putative prophage LambdaBa02, tape measure protein  34.08 
 
 
1671 aa  77.8  0.0000000000008  Bacillus cereus AH187  Bacteria  normal  0.0144482  n/a   
 
 
-
 
NC_005945  BAS3793  prophage LambdaBa02, tape measure protein  33.33 
 
 
959 aa  77.4  0.000000000001  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4082  prophage LambdaBa02, tape measure protein  33.33 
 
 
959 aa  77.4  0.000000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.27862  n/a   
 
 
-
 
NC_010002  Daci_3444  phage tape measure protein  36.92 
 
 
904 aa  77  0.000000000002  Delftia acidovorans SPH-1  Bacteria  normal  0.144492  normal 
 
 
-
 
NC_009667  Oant_0888  TP901 family phage tail tape measure protein  25.17 
 
 
757 aa  73.2  0.00000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.322682  n/a   
 
 
-
 
NC_013093  Amir_5635  phage tail tape measure protein, TP901 family  30.88 
 
 
1371 aa  71.6  0.00000000006  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_1457  TP901 family phage tail tape measure protein  30 
 
 
1409 aa  68.9  0.0000000004  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.143459  normal  0.730205 
 
 
-
 
NC_008752  Aave_4099  phage tape measure protein  39.6 
 
 
1137 aa  63.2  0.00000002  Acidovorax citrulli AAC00-1  Bacteria  normal  hitchhiker  0.00245804 
 
 
-
 
NC_008752  Aave_2890  phage tape measure protein  39.6 
 
 
1137 aa  63.2  0.00000002  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.132683 
 
 
-
 
NC_013204  Elen_2636  phage tail tape measure protein, TP901 family  26.01 
 
 
805 aa  62.4  0.00000004  Eggerthella lenta DSM 2243  Bacteria  normal  hitchhiker  0.0092648 
 
 
-
 
NC_009632  SaurJH1_2046  TP901 family phage tail tape measure protein  22.41 
 
 
1510 aa  59.3  0.0000003  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_2010  TP901 family phage tail tape measure protein  22.41 
 
 
1510 aa  59.3  0.0000003  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009975  MmarC6_0079  TP901 family phage tail tape measure protein  21.39 
 
 
987 aa  58.9  0.0000005  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0993  hypothetical protein  33.57 
 
 
361 aa  53.5  0.00002  Escherichia coli E24377A  Bacteria  normal  0.600478  n/a   
 
 
-
 
NC_011988  Avi_6196  phage tail protein  41.18 
 
 
759 aa  53.5  0.00002  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_1213  phage tail tape measure protein, TP901 family  22.78 
 
 
1245 aa  52.8  0.00003  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.73999 
 
 
-
 
NC_009972  Haur_0549  TP901 family phage tail tape measure protein  27.4 
 
 
1347 aa  51.2  0.00009  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.321201  n/a   
 
 
-
 
NC_009972  Haur_1369  TP901 family phage tail tape measure protein  26.61 
 
 
1347 aa  49.7  0.0002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.275102  n/a   
 
 
-
 
NC_014150  Bmur_1303  phage tail tape measure protein, TP901 family  24.77 
 
 
1156 aa  48.1  0.0008  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_1687  phage tail tape measure protein, TP901 family  24.77 
 
 
1156 aa  48.1  0.0008  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_2263  phage tail tape measure protein, TP901 family  24.77 
 
 
1156 aa  48.1  0.0008  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3658  phage tail tape measure protein, TP901 family  25.08 
 
 
733 aa  47.8  0.001  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_004116  SAG1844  hypothetical protein  27.5 
 
 
911 aa  47.8  0.001  Streptococcus agalactiae 2603V/R  Bacteria  unclonable  0.00878784  n/a   
 
 
-
 
NC_007778  RPB_3315  Phage tail tape measure protein  28.25 
 
 
858 aa  46.6  0.002  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0157558  normal  0.305468 
 
 
-
 
NC_013170  Ccur_02660  phage tail tape measure protein, TP901 family  23.35 
 
 
1095 aa  44.3  0.01  Cryptobacterium curtum DSM 15641  Bacteria  normal  hitchhiker  0.00000000274947 
 
 
-
 
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