186 homologs were found in PanDaTox collection
for query gene Pnap_0398 on replicon NC_008781
Organism: Polaromonas naphthalenivorans CJ2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008781  Pnap_0398  response regulator receiver protein  100 
 
 
132 aa  268  1e-71  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.151817 
 
 
-
 
NC_012791  Vapar_1259  response regulator receiver protein  46.96 
 
 
136 aa  114  5e-25  Variovorax paradoxus S110  Bacteria  normal  0.499071  n/a   
 
 
-
 
NC_007948  Bpro_0882  response regulator receiver domain-containing protein  46.55 
 
 
131 aa  113  8.999999999999998e-25  Polaromonas sp. JS666  Bacteria  normal  0.489217  normal  0.567354 
 
 
-
 
NC_007948  Bpro_4742  response regulator receiver domain-containing protein  49.14 
 
 
133 aa  108  3e-23  Polaromonas sp. JS666  Bacteria  normal  0.881112  normal 
 
 
-
 
NC_010002  Daci_1810  response regulator receiver protein  43.86 
 
 
142 aa  105  3e-22  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2831  response regulator receiver protein  41.22 
 
 
136 aa  103  6e-22  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3508  response regulator receiver protein  43.31 
 
 
136 aa  102  1e-21  Acidovorax sp. JS42  Bacteria  normal  0.790659  normal 
 
 
-
 
NC_008786  Veis_0033  response regulator receiver protein  41.88 
 
 
153 aa  102  2e-21  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.315681  normal 
 
 
-
 
NC_007948  Bpro_2455  response regulator receiver domain-containing protein  41.79 
 
 
156 aa  100  5e-21  Polaromonas sp. JS666  Bacteria  normal  0.275006  normal  0.0886076 
 
 
-
 
NC_008752  Aave_3861  response regulator receiver protein  41.38 
 
 
131 aa  99.4  1e-20  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.766529 
 
 
-
 
NC_008781  Pnap_0923  response regulator receiver protein  42.24 
 
 
132 aa  96.3  1e-19  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_3636  response regulator receiver protein  38.1 
 
 
126 aa  94.7  3e-19  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4107  response regulator receiver protein  37.8 
 
 
137 aa  93.2  1e-18  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_2734  response regulator receiver protein  42.24 
 
 
130 aa  91.7  3e-18  Variovorax paradoxus S110  Bacteria  normal  0.434991  n/a   
 
 
-
 
NC_008825  Mpe_A2901  putative transcription regulator protein  40.71 
 
 
132 aa  91.7  3e-18  Methylibium petroleiphilum PM1  Bacteria  normal  0.0194664  normal 
 
 
-
 
NC_012792  Vapar_6326  response regulator receiver protein  43.97 
 
 
123 aa  85.9  2e-16  Variovorax paradoxus S110  Bacteria  normal  0.212906  n/a   
 
 
-
 
NC_008781  Pnap_3994  response regulator receiver protein  38.39 
 
 
146 aa  84.3  5e-16  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.73116  normal  0.876977 
 
 
-
 
NC_007948  Bpro_0607  response regulator receiver domain-containing protein  37.61 
 
 
129 aa  80.5  0.000000000000007  Polaromonas sp. JS666  Bacteria  hitchhiker  0.00000161034  normal 
 
 
-
 
NC_007908  Rfer_1872  response regulator receiver domain-containing protein  35.09 
 
 
139 aa  80.5  0.000000000000008  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc0291  putative transcription regulator protein  32.79 
 
 
146 aa  67  0.00000000008  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_0152  response regulator receiver protein  32.79 
 
 
146 aa  66.6  0.0000000001  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0091  response regulator receiver domain-containing protein  33.33 
 
 
135 aa  65.9  0.0000000002  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0144  response regulator receiver protein  32.79 
 
 
146 aa  65.5  0.0000000002  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A0122  response regulator receiver  32.79 
 
 
136 aa  63.9  0.0000000007  Ralstonia eutropha JMP134  Bacteria  normal  0.940533  n/a   
 
 
-
 
NC_007404  Tbd_2236  response regulator receiver domain-containing protein  32.81 
 
 
155 aa  60.8  0.000000005  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B1664  response regulator receiver domain-containing protein  32.8 
 
 
134 aa  59.7  0.00000001  Burkholderia sp. 383  Bacteria  normal  0.0208755  normal  0.0661696 
 
 
-
 
NC_010086  Bmul_4264  response regulator receiver protein  32 
 
 
134 aa  57.8  0.00000005  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.167858  normal 
 
 
-
 
NC_011662  Tmz1t_0475  response regulator receiver protein  34.68 
 
 
143 aa  57  0.00000009  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_5998  response regulator receiver protein  30.95 
 
 
136 aa  56.6  0.0000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4011  response regulator receiver protein  30.95 
 
 
136 aa  56.6  0.0000001  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4356  response regulator receiver protein  30.95 
 
 
136 aa  56.6  0.0000001  Burkholderia cenocepacia HI2424  Bacteria  normal  0.140431  normal 
 
 
-
 
NC_007951  Bxe_A1461  response regulator receiver domain-containing protein  29.69 
 
 
149 aa  55.1  0.0000003  Burkholderia xenovorans LB400  Bacteria  normal  0.544855  normal  0.363371 
 
 
-
 
NC_010681  Bphyt_2655  response regulator receiver protein  30.47 
 
 
142 aa  55.1  0.0000003  Burkholderia phytofirmans PsJN  Bacteria  normal  0.822475  normal  0.523205 
 
 
-
 
NC_013510  Tcur_0500  two component transcriptional regulator, LuxR family  33.7 
 
 
226 aa  52.4  0.000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_4145  two component transcriptional regulator, LuxR family  36.67 
 
 
216 aa  52.4  0.000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_3505  LuxR family two component transcriptional regulator  32.26 
 
 
213 aa  52.8  0.000002  Thermobispora bispora DSM 43833  Bacteria  normal  0.345096  normal 
 
 
-
 
NC_013501  Rmar_2436  response regulator receiver protein  30 
 
 
124 aa  50.8  0.000006  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_13154  two component system transcriptional regulatory protein DevR  32.63 
 
 
217 aa  50.1  0.000009  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2950  LuxR response regulator receiver  30.85 
 
 
221 aa  50.1  0.00001  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1883  two component transcriptional regulator, LuxR family  34.04 
 
 
222 aa  49.7  0.00001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_2227  two component transcriptional regulator, LuxR family  35.48 
 
 
217 aa  50.1  0.00001  Rhodothermus marinus DSM 4252  Bacteria  normal  0.632961  n/a   
 
 
-
 
NC_008578  Acel_0262  response regulator receiver protein  27.42 
 
 
155 aa  49.7  0.00001  Acidothermus cellulolyticus 11B  Bacteria  normal  0.62327  normal 
 
 
-
 
NC_010676  Bphyt_6315  transcriptional regulator, Crp/Fnr family  32.79 
 
 
403 aa  50.1  0.00001  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1402  two component LuxR family transcriptional regulator  26.19 
 
 
211 aa  50.1  0.00001  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007333  Tfu_3035  LuxR response regulator receiver  27.78 
 
 
223 aa  49.3  0.00002  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3524  response regulator receiver protein  29.03 
 
 
214 aa  48.5  0.00003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0390864  normal 
 
 
-
 
NC_012791  Vapar_0939  two component transcriptional regulator, LuxR family  29.73 
 
 
247 aa  48.1  0.00004  Variovorax paradoxus S110  Bacteria  normal  0.224899  n/a   
 
 
-
 
NC_007498  Pcar_1400  two component signal transduction response regulator  22.13 
 
 
214 aa  48.1  0.00004  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_4126  two component LuxR family transcriptional regulator  31.58 
 
 
220 aa  48.1  0.00004  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4201  two component LuxR family transcriptional regulator  31.58 
 
 
215 aa  47.8  0.00005  Mycobacterium sp. KMS  Bacteria  normal  0.180608  normal 
 
 
-
 
NC_009077  Mjls_4357  two component LuxR family transcriptional regulator  31.58 
 
 
215 aa  47.8  0.00005  Mycobacterium sp. JLS  Bacteria  normal  normal  0.171113 
 
 
-
 
NC_008726  Mvan_2548  two component LuxR family transcriptional regulator  32.63 
 
 
216 aa  47.8  0.00006  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.971783  normal 
 
 
-
 
NC_013947  Snas_3811  two component transcriptional regulator, LuxR family  28.57 
 
 
206 aa  47.4  0.00006  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  hitchhiker  0.00252848 
 
 
-
 
NC_010524  Lcho_3952  two component LuxR family transcriptional regulator  32.23 
 
 
222 aa  47.4  0.00007  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.173353 
 
 
-
 
NC_007974  Rmet_4986  two component LuxR family transcriptional regulator  33.73 
 
 
237 aa  47  0.00008  Cupriavidus metallidurans CH34  Bacteria  normal  0.170484  normal  0.313407 
 
 
-
 
NC_008148  Rxyl_0094  two component LuxR family transcriptional regulator  30.43 
 
 
222 aa  47  0.00008  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_00310  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  28.79 
 
 
213 aa  47  0.00009  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0094  two component transcriptional regulator, LuxR family  30.11 
 
 
233 aa  47  0.00009  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0277195 
 
 
-
 
NC_012912  Dd1591_1518  response regulator  25.58 
 
 
220 aa  46.2  0.0001  Dickeya zeae Ech1591  Bacteria  normal  0.121615  n/a   
 
 
-
 
NC_010552  BamMC406_4239  response regulator receiver protein  32.74 
 
 
135 aa  46.6  0.0001  Burkholderia ambifaria MC40-6  Bacteria  normal  0.04072  normal 
 
 
-
 
NC_007948  Bpro_4295  response regulator receiver domain-containing protein  34.09 
 
 
142 aa  47  0.0001  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1769  two component transcriptional regulator, LuxR family  29 
 
 
219 aa  46.6  0.0001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.221401  normal  0.0578747 
 
 
-
 
NC_013124  Afer_1446  two component transcriptional regulator, LuxR family  28 
 
 
223 aa  46.6  0.0001  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_5812  response regulator receiver protein  33.64 
 
 
138 aa  46.6  0.0001  Burkholderia phymatum STM815  Bacteria  normal  normal  0.113001 
 
 
-
 
NC_007498  Pcar_0978  two component signal transduction response regulator  23.53 
 
 
223 aa  45.4  0.0002  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0402933  n/a   
 
 
-
 
NC_008146  Mmcs_1076  two component LuxR family transcriptional regulator  31.25 
 
 
228 aa  45.4  0.0002  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1092  two component LuxR family transcriptional regulator  31.25 
 
 
228 aa  45.4  0.0002  Mycobacterium sp. KMS  Bacteria  normal  0.123414  normal  0.110897 
 
 
-
 
NC_009077  Mjls_1103  two component LuxR family transcriptional regulator  31.25 
 
 
228 aa  45.4  0.0002  Mycobacterium sp. JLS  Bacteria  normal  0.191898  normal 
 
 
-
 
NC_008391  Bamb_3765  response regulator receiver protein  29.13 
 
 
135 aa  45.4  0.0003  Burkholderia ambifaria AMMD  Bacteria  normal  0.238428  normal  0.0480348 
 
 
-
 
NC_011992  Dtpsy_1772  two component transcriptional regulator, LuxR family  28.57 
 
 
262 aa  45.4  0.0003  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  29.17 
 
 
226 aa  45.4  0.0003  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009485  BBta_4355  PAS/PAC sensor hybrid histidine kinase  29.69 
 
 
600 aa  45.1  0.0003  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0454  multisensor hybrid histidine kinase  26.67 
 
 
766 aa  44.7  0.0004  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3373  two component LuxR family transcriptional regulator  26.79 
 
 
262 aa  45.1  0.0004  Rhodoferax ferrireducens T118  Bacteria  normal  0.492418  n/a   
 
 
-
 
NC_011830  Dhaf_1194  two component transcriptional regulator, LuxR family  29.31 
 
 
217 aa  45.1  0.0004  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.272513  n/a   
 
 
-
 
NC_010571  Oter_0043  two component LuxR family transcriptional regulator  29.89 
 
 
234 aa  44.7  0.0004  Opitutus terrae PB90-1  Bacteria  normal  normal  0.14113 
 
 
-
 
NC_009049  Rsph17029_2107  multi-sensor hybrid histidine kinase  26.67 
 
 
770 aa  44.7  0.0004  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  27.08 
 
 
223 aa  44.7  0.0004  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0556432 
 
 
-
 
NC_011312  VSAL_I2141  response regulator  25.93 
 
 
214 aa  44.7  0.0005  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.126922  n/a   
 
 
-
 
NC_012792  Vapar_5997  response regulator receiver protein  32.61 
 
 
103 aa  44.7  0.0005  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6098  two component transcriptional regulator, LuxR family  28.24 
 
 
218 aa  44.3  0.0005  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_3273  two component Fis family transcriptional regulator  30 
 
 
194 aa  44.3  0.0005  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_22850  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  28.42 
 
 
239 aa  44.3  0.0006  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.711047 
 
 
-
 
NC_011831  Cagg_1346  two component transcriptional regulator, LuxR family  25.81 
 
 
236 aa  44.3  0.0006  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.361751  hitchhiker  0.00000337078 
 
 
-
 
NC_008009  Acid345_1528  response regulator receiver modulated CheB methylesterase  28.89 
 
 
355 aa  44.3  0.0006  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.308389 
 
 
-
 
NC_003909  BCE_1102  LuxR family DNA-binding response regulator  24.17 
 
 
214 aa  43.9  0.0007  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1472  response regulator receiver protein  28.91 
 
 
302 aa  43.9  0.0007  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A0258  LuxR response regulator receiver  25.56 
 
 
230 aa  43.9  0.0007  Burkholderia pseudomallei 668  Bacteria  normal  0.752946  n/a   
 
 
-
 
NC_009338  Mflv_3847  two component LuxR family transcriptional regulator  28.26 
 
 
216 aa  43.9  0.0008  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.118356  decreased coverage  0.00872558 
 
 
-
 
NC_010682  Rpic_3417  two component transcriptional regulator, LuxR family  26.36 
 
 
232 aa  43.5  0.0009  Ralstonia pickettii 12J  Bacteria  normal  0.901274  normal 
 
 
-
 
NC_007614  Nmul_A1336  two component LuxR family transcriptional regulator  23.2 
 
 
208 aa  43.5  0.001  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3021  sporulation transcriptional activator Spo0A  28.03 
 
 
264 aa  43.1  0.001  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000341276  n/a   
 
 
-
 
NC_008609  Ppro_3351  two component, sigma54 specific, Fis family transcriptional regulator  28.33 
 
 
465 aa  43.1  0.001  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A1635  response regulator  33.63 
 
 
136 aa  43.5  0.001  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1553  response regulator  33.63 
 
 
136 aa  43.5  0.001  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0762  response regulator receiver modulated metal dependent phosphohydrolase  30.09 
 
 
368 aa  43.1  0.001  Thermotoga sp. RQ2  Bacteria  normal  0.218112  n/a   
 
 
-
 
NC_011726  PCC8801_2623  two component transcriptional regulator, LuxR family  30 
 
 
210 aa  43.1  0.001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011726  PCC8801_1927  two component transcriptional regulator, LuxR family  30.4 
 
 
221 aa  43.5  0.001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009523  RoseRS_3814  response regulator receiver protein  30 
 
 
127 aa  43.1  0.001  Roseiflexus sp. RS-1  Bacteria  normal  0.466742  normal  0.446242 
 
 
-
 
NC_009767  Rcas_4227  two component LuxR family transcriptional regulator  27.83 
 
 
213 aa  43.1  0.001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.624898 
 
 
-
 
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