6 homologs were found in PanDaTox collection
for query gene Pmen_3980 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009439  Pmen_3980  TraR/DksA family transcriptional regulator  100 
 
 		 72 aa  146  1.0000000000000001e-34  Pseudomonas mendocina ymp  Bacteria  decreased coverage  0.0000000420347  normal  0.150452 
 
 
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NC_002947  PP_3037  C4-type zinc finger DksA/TraR family protein  46.38 
 
 		 72 aa  54.3  0.0000006  Pseudomonas putida KT2440  Bacteria  normal  0.0965532  normal  0.257312 
 
 
-
 
NC_009656  PSPA7_0756  hypothetical protein  47.06 
 
 		 66 aa  52  0.000002  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0374591  n/a   
 
 
-
 
NC_008463  PA14_07970  hypothetical protein  45.59 
 
 		 66 aa  48.9  0.00002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  2.71217e-16  hitchhiker  0.000634076 
 
 
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NC_012912  Dd1591_1833  transcriptional regulator, TraR/DksA family  38.24 
 
 		 74 aa  42.7  0.002  Dickeya zeae Ech1591  Bacteria  normal  0.0989587  n/a   
 
 
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NC_008751  Dvul_2758  TraR/DksA family transcriptional regulator  42.86 
 
 		 68 aa  41.6  0.004  Desulfovibrio vulgaris DP4  Bacteria  normal  1  normal  0.421806 
 
 
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