8 homologs were found in PanDaTox collection
for query gene Pmen_0017 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009439  Pmen_0017  type IV pilus assembly PilZ  100 
 
 
88 aa  182  1.0000000000000001e-45  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_00130  hypothetical protein  74.71 
 
 
88 aa  139  9.999999999999999e-33  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0012  hypothetical protein  74.12 
 
 
88 aa  136  1e-31  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0313  HAD family hydrolase  47.73 
 
 
88 aa  86.3  1e-16  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0281627 
 
 
-
 
NC_008740  Maqu_1093  type IV pilus assembly PilZ  45.35 
 
 
92 aa  71.2  0.000000000005  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00192328  n/a   
 
 
-
 
NC_007912  Sde_0399  hypothetical protein  34.88 
 
 
86 aa  63.2  0.000000001  Saccharophagus degradans 2-40  Bacteria  normal  0.40238  normal 
 
 
-
 
NC_007484  Noc_2668  hypothetical protein  34.07 
 
 
97 aa  48.1  0.00004  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2619  TonB-dependent receptor  30.26 
 
 
90 aa  44.7  0.0005  Saccharophagus degradans 2-40  Bacteria  normal  0.0291507  normal 
 
 
-
 
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