144 homologs were found in PanDaTox collection
for query gene Plav_1694 on replicon NC_009719
Organism: Parvibaculum lavamentivorans DS-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009719  Plav_1694  CarD family transcriptional regulator  100 
 
 
350 aa  655    Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.335809  normal  0.132221 
 
 
-
 
NC_011004  Rpal_0489  transcriptional regulator, CarD family  75 
 
 
278 aa  266  2.9999999999999995e-70  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_0278  transcription factor CarD  73.17 
 
 
432 aa  266  5e-70  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.197745 
 
 
-
 
NC_007778  RPB_0551  CarD family transcriptional regulator  69.66 
 
 
429 aa  265  5.999999999999999e-70  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0207185  normal  0.0758016 
 
 
-
 
NC_007406  Nwi_0412  transcription factor CarD  74.84 
 
 
283 aa  265  1e-69  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.595911  normal 
 
 
-
 
NC_007925  RPC_0548  CarD family transcriptional regulator  72.46 
 
 
365 aa  263  3e-69  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.300109  normal  0.699777 
 
 
-
 
NC_007964  Nham_0507  CarD family transcriptional regulator  66.84 
 
 
259 aa  261  2e-68  Nitrobacter hamburgensis X14  Bacteria  normal  0.0122387  n/a   
 
 
-
 
NC_008254  Meso_3379  CarD family transcriptional regulator  67.03 
 
 
190 aa  257  2e-67  Chelativorans sp. BNC1  Bacteria  decreased coverage  0.0000000818177  n/a   
 
 
 
NC_009485  BBta_7543  CarD family transcriptional regulator  71.01 
 
 
278 aa  256  3e-67  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.330727  normal 
 
 
-
 
NC_009720  Xaut_0187  CarD family transcriptional regulator  64.58 
 
 
206 aa  255  7e-67  Xanthobacter autotrophicus Py2  Bacteria  normal  0.160759  normal 
 
 
-
 
NC_010581  Bind_3138  CarD family transcriptional regulator  68.31 
 
 
368 aa  255  7e-67  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_1371  transcriptional regulator, CarD family  72.5 
 
 
456 aa  255  9e-67  Methylocella silvestris BL2  Bacteria  n/a    normal  0.401785 
 
 
-
 
NC_009636  Smed_3112  CarD family transcriptional regulator  65.57 
 
 
189 aa  250  3e-65  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.0000522164  normal 
 
 
-
 
NC_010725  Mpop_4337  transcriptional regulator, CarD family  70.99 
 
 
198 aa  248  7e-65  Methylobacterium populi BJ001  Bacteria  normal  0.139184  normal  0.529688 
 
 
-
 
NC_004310  BR1766  transcriptional regulator, putative  71.07 
 
 
191 aa  248  9e-65  Brucella suis 1330  Bacteria  hitchhiker  0.000100794  n/a   
 
 
-
 
NC_009505  BOV_1702  putative transcriptional regulator  71.07 
 
 
191 aa  248  9e-65  Brucella ovis ATCC 25840  Bacteria  unclonable  0.00000176532  n/a   
 
 
-
 
NC_009667  Oant_1134  CarD family transcriptional regulator  70.44 
 
 
193 aa  247  2e-64  Ochrobactrum anthropi ATCC 49188  Bacteria  hitchhiker  0.000250032  n/a   
 
 
-
 
NC_012850  Rleg_4143  transcriptional regulator, CarD family  64.48 
 
 
190 aa  247  3e-64  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0239678  normal  0.0810654 
 
 
-
 
NC_011369  Rleg2_3814  transcriptional regulator, CarD family  64.48 
 
 
190 aa  247  3e-64  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_4352  transcriptional regulator CarD family  65.03 
 
 
223 aa  245  6.999999999999999e-64  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_4805  CarD family transcriptional regulator  68.07 
 
 
197 aa  245  9.999999999999999e-64  Methylobacterium sp. 4-46  Bacteria  normal  0.0268969  hitchhiker  0.000256244 
 
 
-
 
NC_011894  Mnod_1718  transcriptional regulator, CarD family  68.07 
 
 
197 aa  244  1.9999999999999999e-63  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_4190  transcriptional regulator, CarD family  69.14 
 
 
196 aa  243  3.9999999999999997e-63  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.627659  normal  0.224383 
 
 
-
 
NC_010172  Mext_3880  transcription factor CarD  68.52 
 
 
196 aa  242  7e-63  Methylobacterium extorquens PA1  Bacteria  normal  0.260556  normal  0.0799721 
 
 
-
 
NC_010505  Mrad2831_3708  CarD family transcriptional regulator  69.18 
 
 
201 aa  239  5e-62  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.378672 
 
 
-
 
NC_010338  Caul_4112  CarD family transcriptional regulator  69.87 
 
 
170 aa  235  7e-61  Caulobacter sp. K31  Bacteria  hitchhiker  0.00258914  normal  0.616295 
 
 
-
 
NC_008044  TM1040_0576  CarD family transcriptional regulator  68.59 
 
 
169 aa  231  1e-59  Ruegeria sp. TM1040  Bacteria  unclonable  0.0000000000504519  unclonable  0.0000000218406 
 
 
-
 
NC_008783  BARBAKC583_0123  CarD family transcriptional regulator  60.12 
 
 
192 aa  230  3e-59  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0786  transcriptional regulator  69.23 
 
 
170 aa  230  3e-59  Dinoroseobacter shibae DFL 12  Bacteria  decreased coverage  0.000100342  normal  0.0526342 
 
 
-
 
NC_007493  RSP_2425  CarD family transcriptional regulator  71.72 
 
 
169 aa  227  2e-58  Rhodobacter sphaeroides 2.4.1  Bacteria  unclonable  0.0000259686  n/a   
 
 
-
 
NC_009049  Rsph17029_1089  CarD family transcriptional regulator  71.72 
 
 
169 aa  227  2e-58  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0349811  normal 
 
 
-
 
NC_009428  Rsph17025_1557  CarD family transcriptional regulator  71.72 
 
 
169 aa  227  2e-58  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0486007  normal  0.568097 
 
 
-
 
NC_008686  Pden_1825  CarD family transcriptional regulator  65.84 
 
 
169 aa  226  4e-58  Paracoccus denitrificans PD1222  Bacteria  unclonable  0.00000000000495809  normal  0.361852 
 
 
-
 
NC_007802  Jann_3308  CarD family transcriptional regulator  71.92 
 
 
172 aa  226  6e-58  Jannaschia sp. CCS1  Bacteria  decreased coverage  0.0000000178714  normal  0.0560372 
 
 
-
 
NC_009511  Swit_3537  CarD family transcriptional regulator  62.11 
 
 
172 aa  219  5e-56  Sphingomonas wittichii RW1  Bacteria  normal  0.92305  normal  0.183465 
 
 
-
 
NC_008347  Mmar10_2296  CarD family transcriptional regulator  63.69 
 
 
169 aa  218  8.999999999999998e-56  Maricaulis maris MCS10  Bacteria  decreased coverage  0.0000229013  normal  0.715869 
 
 
-
 
NC_007794  Saro_0124  CarD family transcriptional regulator  59.87 
 
 
174 aa  211  2e-53  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0079  CarD family transcriptional regulator  60 
 
 
165 aa  209  8e-53  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_0247  CarD family transcriptional regulator  59.62 
 
 
175 aa  205  1e-51  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.246568 
 
 
-
 
NC_009484  Acry_3091  CarD family transcriptional regulator  42.11 
 
 
266 aa  183  4.0000000000000006e-45  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_0077  transcriptional regulator, CarD family  46.81 
 
 
196 aa  135  9.999999999999999e-31  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.449378  hitchhiker  0.00491109 
 
 
-
 
NC_009675  Anae109_2498  CarD family transcriptional regulator  35.81 
 
 
171 aa  103  4e-21  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.860997  hitchhiker  0.00028149 
 
 
-
 
NC_007498  Pcar_0104  putative transcriptional regulator  35.44 
 
 
161 aa  100  3e-20  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1271  CarD family transcriptional regulator  35.71 
 
 
171 aa  98.6  1e-19  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.0355661  n/a   
 
 
-
 
NC_011145  AnaeK_2592  transcriptional regulator, CarD family  35.71 
 
 
171 aa  98.6  1e-19  Anaeromyxobacter sp. K  Bacteria  normal  0.0112448  n/a   
 
 
-
 
NC_011891  A2cp1_2685  transcriptional regulator, CarD family  35.71 
 
 
171 aa  98.6  1e-19  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  decreased coverage  0.000114953  n/a   
 
 
-
 
NC_011883  Ddes_1455  transcriptional regulator, CarD family  34 
 
 
171 aa  87.8  2e-16  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  hitchhiker  0.000871292  n/a   
 
 
-
 
NC_011769  DvMF_0490  transcriptional regulator, CarD family  35.66 
 
 
171 aa  86.7  6e-16  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    hitchhiker  0.00257809 
 
 
-
 
NC_009943  Dole_2821  CarD family transcriptional regulator  30.28 
 
 
188 aa  84.7  0.000000000000002  Desulfococcus oleovorans Hxd3  Bacteria  decreased coverage  0.000000000911518  n/a   
 
 
-
 
NC_013223  Dret_0842  transcriptional regulator, CarD family  32.37 
 
 
174 aa  84.7  0.000000000000002  Desulfohalobium retbaense DSM 5692  Bacteria  hitchhiker  0.000000502927  normal  0.471539 
 
 
-
 
NC_007333  Tfu_2907  CarD family transcriptional regulator  34.81 
 
 
160 aa  84  0.000000000000003  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3655  CarD family transcriptional regulator  30.38 
 
 
159 aa  83.2  0.000000000000006  Syntrophobacter fumaroxidans MPOB  Bacteria  unclonable  0.000000563805  normal 
 
 
-
 
NC_014150  Bmur_1516  transcriptional regulator, CarD family  29.81 
 
 
191 aa  82.4  0.00000000000001  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_1561  CarD family transcriptional regulator  32.32 
 
 
171 aa  82.4  0.00000000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  0.0294353  normal 
 
 
-
 
NC_009253  Dred_0185  CarD family transcriptional regulator  35.66 
 
 
158 aa  82.4  0.00000000000001  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0164199  n/a   
 
 
-
 
NC_013441  Gbro_0970  transcription factor CarD  34.13 
 
 
162 aa  80.5  0.00000000000004  Gordonia bronchialis DSM 43247  Bacteria  normal  0.0421613  n/a   
 
 
-
 
NC_013440  Hoch_4522  transcriptional regulator, CarD family  32.03 
 
 
162 aa  80.5  0.00000000000004  Haliangium ochraceum DSM 14365  Bacteria  normal  0.76792  normal 
 
 
-
 
NC_014210  Ndas_4319  transcriptional regulator, CarD family  35.81 
 
 
160 aa  80.1  0.00000000000006  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_4040  CarD family transcriptional regulator  35.33 
 
 
161 aa  79.7  0.00000000000008  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_4255  CarD family transcriptional regulator  33.54 
 
 
160 aa  77.4  0.0000000000004  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_0362  CarD family transcriptional regulator  33.54 
 
 
160 aa  77.4  0.0000000000004  Frankia sp. EAN1pec  Bacteria  normal  0.0755625  hitchhiker  0.00187432 
 
 
-
 
NC_013510  Tcur_0703  transcriptional regulator, CarD family  32.91 
 
 
160 aa  77  0.0000000000005  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0540347  n/a   
 
 
-
 
NC_007519  Dde_2129  CarD family transcriptional regulator  32.62 
 
 
171 aa  75.5  0.000000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00000417327  n/a   
 
 
-
 
NC_013131  Caci_8145  transcriptional regulator, CarD family  41.12 
 
 
160 aa  75.1  0.000000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_0364  transcriptional regulator, CarD family  34.62 
 
 
162 aa  75.5  0.000000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  0.376987  n/a   
 
 
-
 
NC_011830  Dhaf_0392  transcriptional regulator, CarD family  30.77 
 
 
158 aa  75.5  0.000000000001  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.0000000000000362697  n/a   
 
 
-
 
NC_002967  TDE2290  transcriptional regulator, putative  33.09 
 
 
208 aa  74.7  0.000000000002  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0501  CarD family transcriptional regulator  32.7 
 
 
163 aa  75.1  0.000000000002  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_1687  transcriptional regulator, CarD family  33.33 
 
 
171 aa  74.7  0.000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.613225  normal  0.385121 
 
 
-
 
NC_013173  Dbac_0676  transcriptional regulator, CarD family  34.04 
 
 
176 aa  74.7  0.000000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  hitchhiker  0.000000026469  n/a   
 
 
-
 
NC_013947  Snas_0142  transcriptional regulator, CarD family  33.8 
 
 
161 aa  74.3  0.000000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.432895  normal  0.208842 
 
 
-
 
NC_008146  Mmcs_4740  CarD family transcriptional regulator  32.69 
 
 
162 aa  74.7  0.000000000003  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4826  CarD family transcriptional regulator  32.69 
 
 
162 aa  74.7  0.000000000003  Mycobacterium sp. KMS  Bacteria  normal  0.652741  normal  0.999363 
 
 
-
 
NC_009077  Mjls_5126  CarD family transcriptional regulator  32.69 
 
 
162 aa  74.7  0.000000000003  Mycobacterium sp. JLS  Bacteria  normal  normal  0.593452 
 
 
-
 
NC_013169  Ksed_03720  transcriptional regulator, CarD family  32.43 
 
 
160 aa  73.9  0.000000000003  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.178862 
 
 
-
 
NC_008726  Mvan_5340  CarD family transcriptional regulator  35.2 
 
 
162 aa  73.6  0.000000000005  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_1444  CarD family transcriptional regulator  35.2 
 
 
162 aa  72.8  0.000000000009  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.250117 
 
 
-
 
NC_014158  Tpau_0601  transcriptional regulator, CarD family  34.04 
 
 
162 aa  72  0.00000000001  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.251005  n/a   
 
 
-
 
NC_009380  Strop_4262  transcription factor CarD  34.46 
 
 
161 aa  72  0.00000000001  Salinispora tropica CNB-440  Bacteria  normal  normal  0.102192 
 
 
-
 
NC_009953  Sare_4692  CarD family transcriptional regulator  34.46 
 
 
161 aa  72  0.00000000001  Salinispora arenicola CNS-205  Bacteria  normal  0.372756  normal 
 
 
-
 
NC_012803  Mlut_03770  transcriptional regulator, CarD family  31.01 
 
 
160 aa  72.8  0.00000000001  Micrococcus luteus NCTC 2665  Bacteria  normal  0.0832449  n/a   
 
 
-
 
NC_013595  Sros_0963  CarD family transcriptional regulator  31.21 
 
 
160 aa  72  0.00000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_0340  transcriptional regulator, CarD family  29.41 
 
 
159 aa  71.6  0.00000000002  Clostridium cellulolyticum H10  Bacteria  normal  0.18012  n/a   
 
 
-
 
NC_009565  TBFG_13616  transcription factor  34.4 
 
 
162 aa  70.9  0.00000000003  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.392977 
 
 
-
 
NC_013235  Namu_0866  transcriptional regulator, CarD family  34.75 
 
 
160 aa  70.5  0.00000000004  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.795809 
 
 
-
 
NC_009674  Bcer98_3388  CarD family transcriptional regulator  30.13 
 
 
159 aa  70.5  0.00000000004  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_0184  CarD family transcriptional regulator  32.43 
 
 
158 aa  70.5  0.00000000004  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.0000461905  n/a   
 
 
-
 
NC_013757  Gobs_0651  transcriptional regulator, CarD family  32.69 
 
 
160 aa  70.5  0.00000000005  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.058243  n/a   
 
 
-
 
NC_009675  Anae109_2786  CarD family transcriptional regulator  26.24 
 
 
364 aa  70.5  0.00000000005  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.0756679  normal 
 
 
-
 
NC_013159  Svir_35090  transcriptional regulator, CarD family  32.5 
 
 
163 aa  69.7  0.00000000007  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.86286 
 
 
-
 
NC_011772  BCG9842_B2164  transcriptional regulator, CarD family  30.14 
 
 
153 aa  68.9  0.0000000001  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_2613  transcriptional regulator, CarD family  33.55 
 
 
163 aa  68.2  0.0000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0898  transcriptional regulator, CarD family  30.77 
 
 
160 aa  68.2  0.0000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  hitchhiker  0.00538334 
 
 
-
 
NC_010718  Nther_0164  transcriptional regulator, CarD family  29.49 
 
 
161 aa  68.2  0.0000000002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.475576  normal 
 
 
-
 
NC_007644  Moth_2489  CarD family transcriptional regulator  32.87 
 
 
158 aa  67.4  0.0000000004  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.00883814  normal  0.0681247 
 
 
-
 
NC_010184  BcerKBAB4_3335  CarD family transcriptional regulator  28.77 
 
 
158 aa  67  0.0000000004  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.512684  n/a   
 
 
-
 
NC_013385  Adeg_0399  transcriptional regulator, CarD family  36.15 
 
 
159 aa  67  0.0000000005  Ammonifex degensii KC4  Bacteria  hitchhiker  0.00433509  n/a   
 
 
-
 
NC_013530  Xcel_2959  transcriptional regulator, CarD family  33.11 
 
 
160 aa  66.6  0.0000000006  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_09270  transcriptional regulator, CarD family  29.94 
 
 
160 aa  66.2  0.0000000009  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_3676  CarD family transcriptional regulator  28.97 
 
 
158 aa  65.5  0.000000001  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
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