More than 300 homologs were found in PanDaTox collection
for query gene Plav_0425 on replicon NC_009719
Organism: Parvibaculum lavamentivorans DS-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009719  Plav_0425  extracellular solute-binding protein  100 
 
 
319 aa  631  1e-180  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.495581  normal 
 
 
-
 
NC_009636  Smed_1588  extracellular solute-binding protein  36.71 
 
 
260 aa  168  1e-40  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_012854  Rleg_6436  extracellular solute-binding protein family 3  35.71 
 
 
268 aa  163  3e-39  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  decreased coverage  0.00118461 
 
 
-
 
NC_011368  Rleg2_4485  extracellular solute-binding protein family 3  35.29 
 
 
268 aa  163  3e-39  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.8611  normal 
 
 
-
 
NC_010581  Bind_0266  extracellular solute-binding protein  38.49 
 
 
292 aa  163  3e-39  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0999  extracellular solute-binding protein  37.3 
 
 
304 aa  159  5e-38  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.584157 
 
 
-
 
NC_007406  Nwi_0150  extracellular solute-binding protein  36.36 
 
 
306 aa  159  6e-38  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.975549 
 
 
-
 
NC_011004  Rpal_5167  extracellular solute-binding protein family 3  36.89 
 
 
318 aa  157  2e-37  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_3023  extracellular solute-binding protein family 3  38.4 
 
 
294 aa  157  2e-37  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007964  Nham_0202  extracellular solute-binding protein  37.07 
 
 
306 aa  157  2e-37  Nitrobacter hamburgensis X14  Bacteria  normal  0.725948  n/a   
 
 
-
 
NC_008254  Meso_1562  extracellular solute-binding protein  34.45 
 
 
261 aa  157  3e-37  Chelativorans sp. BNC1  Bacteria  normal  0.470134  n/a   
 
 
-
 
NC_011989  Avi_2066  ABC transporter substrate binding protein (amino acid)  35.56 
 
 
258 aa  156  4e-37  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_1067  extracellular solute-binding protein family 3  33.76 
 
 
294 aa  155  8e-37  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0464798 
 
 
-
 
NC_007778  RPB_0887  extracellular solute-binding protein  37.5 
 
 
290 aa  154  2e-36  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_2214  extracellular solute-binding protein  34.55 
 
 
268 aa  153  4e-36  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_0729  extracellular solute-binding protein  33.12 
 
 
318 aa  151  2e-35  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.446742  normal  0.30254 
 
 
-
 
NC_009485  BBta_0788  putative ABC transporter, periplasmic amino acid-binding protein  34.43 
 
 
302 aa  151  2e-35  Bradyrhizobium sp. BTAi1  Bacteria  normal  hitchhiker  0.00334731 
 
 
-
 
NC_009505  BOV_0854  amino acid ABC transporter, periplasmic amino acid-binding protein  33.9 
 
 
282 aa  150  4e-35  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0955  amino acid ABC transporter, periplasmic amino acid-binding protein  34.75 
 
 
268 aa  149  8e-35  Brucella suis 1330  Bacteria  normal  0.0776363  n/a   
 
 
-
 
NC_009667  Oant_2235  extracellular solute-binding protein  34.75 
 
 
268 aa  148  1.0000000000000001e-34  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4274  extracellular solute-binding protein  33.06 
 
 
258 aa  148  2.0000000000000003e-34  Sinorhizobium medicae WSM419  Bacteria  normal  0.0882363  normal 
 
 
-
 
NC_009636  Smed_0135  extracellular solute-binding protein  34.87 
 
 
283 aa  146  5e-34  Sinorhizobium medicae WSM419  Bacteria  normal  0.798842  normal  0.332804 
 
 
-
 
NC_008254  Meso_0015  extracellular solute-binding protein  37.34 
 
 
279 aa  145  1e-33  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6191  extracellular solute-binding protein  40.08 
 
 
262 aa  144  1e-33  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_2383  extracellular solute-binding protein  32.92 
 
 
317 aa  142  9e-33  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1098  extracellular solute-binding protein  36.1 
 
 
254 aa  141  9.999999999999999e-33  Pseudomonas mendocina ymp  Bacteria  normal  0.041078  normal  0.0345837 
 
 
-
 
NC_010505  Mrad2831_1626  extracellular solute-binding protein  35.51 
 
 
327 aa  140  3e-32  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.536801  normal  0.13632 
 
 
-
 
NC_008786  Veis_1928  extracellular solute-binding protein  30.42 
 
 
265 aa  137  3.0000000000000003e-31  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.402085 
 
 
-
 
NC_008825  Mpe_A2879  putative amino acid binding protein  34.17 
 
 
263 aa  136  4e-31  Methylibium petroleiphilum PM1  Bacteria  normal  0.336803  normal 
 
 
-
 
NC_009668  Oant_3710  extracellular solute-binding protein  32.52 
 
 
253 aa  136  5e-31  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.33118  n/a   
 
 
-
 
NC_010322  PputGB1_2323  extracellular solute-binding protein  34.45 
 
 
250 aa  136  5e-31  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_2833  ABC amino acid transporter extracellular solute-binding protein, family 3  34.04 
 
 
258 aa  136  5e-31  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_6710  extracellular solute-binding protein family 3  37.6 
 
 
256 aa  135  9e-31  Methylobacterium nodulans ORS 2060  Bacteria  decreased coverage  0.000229164  n/a   
 
 
-
 
NC_004311  BRA0631  amino acid ABC transporter, periplasmic amino acid-binding protein  31.3 
 
 
253 aa  135  9.999999999999999e-31  Brucella suis 1330  Bacteria  decreased coverage  0.00542513  n/a   
 
 
-
 
NC_009504  BOV_A0593  amino acid ABC transporter, periplasmic amino acid-binding protein  31.3 
 
 
253 aa  135  9.999999999999999e-31  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_2179  extracellular solute-binding protein  33.61 
 
 
250 aa  135  9.999999999999999e-31  Pseudomonas putida F1  Bacteria  normal  0.158318  normal 
 
 
-
 
NC_002947  PP_3593  amino acid ABC transporter, periplasmic amino acid-binding protein  33.19 
 
 
250 aa  134  1.9999999999999998e-30  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_3770  extracellular solute-binding protein  34.11 
 
 
295 aa  133  3.9999999999999996e-30  Methylobacterium sp. 4-46  Bacteria  normal  0.169569  normal  0.253377 
 
 
-
 
NC_011757  Mchl_3550  extracellular solute-binding protein family 3  34.53 
 
 
307 aa  133  5e-30  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.73273 
 
 
-
 
NC_010581  Bind_1787  extracellular solute-binding protein  31.3 
 
 
281 aa  133  5e-30  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.571059  normal 
 
 
-
 
NC_010172  Mext_3226  extracellular solute-binding protein  34.53 
 
 
307 aa  132  1.0000000000000001e-29  Methylobacterium extorquens PA1  Bacteria  normal  0.0831998  normal  0.589747 
 
 
-
 
NC_010501  PputW619_2808  extracellular solute-binding protein  32.77 
 
 
250 aa  131  1.0000000000000001e-29  Pseudomonas putida W619  Bacteria  normal  0.857979  normal  0.951072 
 
 
-
 
NC_012792  Vapar_5842  extracellular solute-binding protein family 3  34.71 
 
 
261 aa  132  1.0000000000000001e-29  Variovorax paradoxus S110  Bacteria  normal  0.742895  n/a   
 
 
-
 
NC_010159  YpAngola_A1582  arginine ABC transporter periplasmic substrate-binding protein ArtI  35.53 
 
 
243 aa  131  2.0000000000000002e-29  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_2860  extracellular solute-binding protein family 3  34.11 
 
 
279 aa  131  2.0000000000000002e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.107141  n/a   
 
 
-
 
NC_009708  YpsIP31758_2626  arginine ABC transporter, periplasmic substrate-binding protein ArtI  35.53 
 
 
243 aa  131  2.0000000000000002e-29  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.359067  n/a   
 
 
-
 
NC_010465  YPK_2711  cationic amino acid ABC transporter, periplasmic binding protein  35.53 
 
 
243 aa  131  2.0000000000000002e-29  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_4365  extracellular solute-binding protein  34.2 
 
 
264 aa  130  3e-29  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2277  cationic amino acid ABC transporter, periplasmic binding protein  34.73 
 
 
243 aa  129  6e-29  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_4286  extracellular solute-binding protein  34.89 
 
 
259 aa  129  6e-29  Burkholderia ambifaria AMMD  Bacteria  normal  0.0413144  normal 
 
 
-
 
NC_012850  Rleg_2289  extracellular solute-binding protein family 3  31.91 
 
 
257 aa  129  7.000000000000001e-29  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.019267  normal 
 
 
-
 
NC_009456  VC0395_0700  arginine ABC transporter, periplasmic arginine-binding protein  31.93 
 
 
243 aa  128  1.0000000000000001e-28  Vibrio cholerae O395  Bacteria  normal  0.347684  n/a   
 
 
-
 
NC_010501  PputW619_3775  cationic amino acid ABC transporter, periplasmic binding protein  33.88 
 
 
261 aa  128  1.0000000000000001e-28  Pseudomonas putida W619  Bacteria  normal  0.361266  hitchhiker  0.000380628 
 
 
-
 
NC_009636  Smed_0175  extracellular solute-binding protein  34.63 
 
 
260 aa  128  1.0000000000000001e-28  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.42214 
 
 
-
 
NC_009667  Oant_2456  extracellular solute-binding protein  29 
 
 
265 aa  127  2.0000000000000002e-28  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.68791  n/a   
 
 
-
 
NC_008463  PA14_13990  putative amino acid ABC transporter  34.02 
 
 
263 aa  127  2.0000000000000002e-28  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.258104  normal  0.0183711 
 
 
-
 
NC_012917  PC1_1701  cationic amino acid ABC transporter, periplasmic binding protein  34.5 
 
 
243 aa  127  2.0000000000000002e-28  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0117133  n/a   
 
 
-
 
NC_004311  BRA0632  amino acid ABC transporter, periplasmic amino acid-binding protein  31.45 
 
 
257 aa  127  4.0000000000000003e-28  Brucella suis 1330  Bacteria  normal  0.0329945  n/a   
 
 
-
 
NC_011369  Rleg2_2056  extracellular solute-binding protein family 3  31.06 
 
 
257 aa  126  4.0000000000000003e-28  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.00137642  normal 
 
 
-
 
NC_010552  BamMC406_4841  extracellular solute-binding protein  34.04 
 
 
259 aa  126  5e-28  Burkholderia ambifaria MC40-6  Bacteria  normal  0.608491  normal  0.182351 
 
 
-
 
NC_009668  Oant_3711  extracellular solute-binding protein  30.96 
 
 
253 aa  126  5e-28  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_1240  amino acid binding protein  34.02 
 
 
263 aa  125  8.000000000000001e-28  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010512  Bcenmc03_6800  extracellular solute-binding protein  34.04 
 
 
259 aa  125  1e-27  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.8606  normal 
 
 
-
 
NC_010725  Mpop_3421  extracellular solute-binding protein family 3  34.36 
 
 
306 aa  124  1e-27  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009504  BOV_A0594  amino acid ABC transporter, periplasmic amino acid-binding protein  30.8 
 
 
257 aa  124  2e-27  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0305  extracellular solute-binding protein  30.58 
 
 
250 aa  124  3e-27  Pseudomonas putida GB-1  Bacteria  hitchhiker  0.000409143  normal  0.868034 
 
 
-
 
NC_007492  Pfl01_4292  lysine-arginine-ornithine-binding periplasmic protein  33.06 
 
 
257 aa  124  3e-27  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.887396 
 
 
-
 
NC_007643  Rru_A2251  extracellular solute-binding protein  34.63 
 
 
263 aa  123  4e-27  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.755561  n/a   
 
 
-
 
NC_010086  Bmul_4902  cationic amino acid ABC transporter, periplasmic binding protein  33.33 
 
 
260 aa  123  4e-27  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.463911  decreased coverage  0.0000475761 
 
 
-
 
NC_009832  Spro_1655  cationic amino acid ABC transporter, periplasmic binding protein  31.36 
 
 
243 aa  123  4e-27  Serratia proteamaculans 568  Bacteria  normal  normal  0.568539 
 
 
-
 
NC_011369  Rleg2_0186  extracellular solute-binding protein family 3  34.31 
 
 
291 aa  122  5e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_3780  cationic amino acid ABC transporter, periplasmic binding protein  30 
 
 
260 aa  122  6e-27  Burkholderia phymatum STM815  Bacteria  normal  0.219824  normal 
 
 
-
 
NC_009654  Mmwyl1_1113  extracellular solute-binding protein  33.62 
 
 
252 aa  122  6e-27  Marinomonas sp. MWYL1  Bacteria  normal  0.264301  normal 
 
 
-
 
NC_002947  PP_4486  cationic amino acid ABC transporter, periplasmic binding protein  32.79 
 
 
261 aa  122  7e-27  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3578  cationic amino acid ABC transporter, periplasmic binding protein  32.4 
 
 
258 aa  122  7e-27  Pseudomonas mendocina ymp  Bacteria  normal  0.930436  normal  0.442967 
 
 
-
 
NC_009512  Pput_0300  extracellular solute-binding protein  30.17 
 
 
250 aa  122  8e-27  Pseudomonas putida F1  Bacteria  normal  0.639045  normal  0.100336 
 
 
-
 
NC_010322  PputGB1_3991  cationic amino acid ABC transporter, periplasmic binding protein  33.06 
 
 
261 aa  122  9e-27  Pseudomonas putida GB-1  Bacteria  normal  normal  0.288365 
 
 
-
 
NC_013421  Pecwa_1967  cationic amino acid ABC transporter, periplasmic binding protein  33.19 
 
 
243 aa  122  9.999999999999999e-27  Pectobacterium wasabiae WPP163  Bacteria  normal  0.471515  n/a   
 
 
-
 
NC_009436  Ent638_1376  cationic amino acid ABC transporter, periplasmic binding protein  33.33 
 
 
243 aa  121  9.999999999999999e-27  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1429  cationic amino acid ABC transporter, periplasmic binding protein  32.64 
 
 
261 aa  121  9.999999999999999e-27  Pseudomonas putida F1  Bacteria  normal  0.0594365  normal 
 
 
-
 
NC_002947  PP_0282  amino acid ABC transporter, periplasmic amino acid-binding protein  29.75 
 
 
250 aa  120  1.9999999999999998e-26  Pseudomonas putida KT2440  Bacteria  normal  0.0338349  hitchhiker  0.000164452 
 
 
-
 
NC_013421  Pecwa_1473  cationic amino acid ABC transporter, periplasmic binding protein  34.15 
 
 
259 aa  121  1.9999999999999998e-26  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_0327  extracellular solute-binding protein  29.24 
 
 
305 aa  121  1.9999999999999998e-26  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_4270  extracellular solute-binding protein  33.75 
 
 
250 aa  121  1.9999999999999998e-26  Pseudomonas mendocina ymp  Bacteria  normal  0.861992  hitchhiker  0.00000000000000985175 
 
 
-
 
NC_010552  BamMC406_3739  cationic amino acid ABC transporter, periplasmic binding protein  32.64 
 
 
260 aa  120  3.9999999999999996e-26  Burkholderia ambifaria MC40-6  Bacteria  normal  0.40213  normal  0.421075 
 
 
-
 
NC_008391  Bamb_5565  cationic amino acid ABC transporter, periplasmic binding protein  32.64 
 
 
260 aa  120  3.9999999999999996e-26  Burkholderia ambifaria AMMD  Bacteria  normal  0.857563  normal 
 
 
-
 
NC_009832  Spro_3207  extracellular solute-binding protein  33.19 
 
 
263 aa  120  3.9999999999999996e-26  Serratia proteamaculans 568  Bacteria  normal  normal  0.0476273 
 
 
-
 
NC_012912  Dd1591_1376  cationic amino acid ABC transporter, periplasmic binding protein  32.28 
 
 
259 aa  119  4.9999999999999996e-26  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_1379  cationic amino acid ABC transporter, periplasmic binding protein  31.36 
 
 
243 aa  119  4.9999999999999996e-26  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_1964  cationic amino acid ABC transporter, periplasmic binding protein  32.43 
 
 
243 aa  119  4.9999999999999996e-26  Pectobacterium wasabiae WPP163  Bacteria  normal  0.822983  n/a   
 
 
-
 
NC_012917  PC1_2790  cationic amino acid ABC transporter, periplasmic binding protein  33.33 
 
 
259 aa  119  6e-26  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.239509  n/a   
 
 
-
 
NC_009439  Pmen_1094  cationic amino acid ABC transporter, periplasmic binding protein  32 
 
 
258 aa  119  7e-26  Pseudomonas mendocina ymp  Bacteria  normal  0.382529  normal  0.0677014 
 
 
-
 
NC_012850  Rleg_0215  extracellular solute-binding protein family 3  33.47 
 
 
291 aa  119  7e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.195827  normal  0.274459 
 
 
-
 
NC_007005  Psyr_4912  extracellular solute-binding protein  30.83 
 
 
254 aa  119  7.999999999999999e-26  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_2724  cationic amino acid ABC transporter, periplasmic binding protein  32.44 
 
 
243 aa  118  9.999999999999999e-26  Yersinia pseudotuberculosis YPIII  Bacteria  hitchhiker  0.00108182  n/a   
 
 
-
 
NC_007492  Pfl01_2064  lysine-arginine-ornithine-binding periplasmic protein  30.8 
 
 
259 aa  118  9.999999999999999e-26  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A1569  arginine ABC transporter periplasmic substrate-binding protein ArtJ  32.44 
 
 
243 aa  118  9.999999999999999e-26  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_1525  extracellular solute-binding protein  29.79 
 
 
255 aa  118  9.999999999999999e-26  Rhodoferax ferrireducens T118  Bacteria  normal  0.490796  n/a   
 
 
-
 
NC_012912  Dd1591_2377  cationic amino acid ABC transporter, periplasmic binding protein  32.49 
 
 
243 aa  118  9.999999999999999e-26  Dickeya zeae Ech1591  Bacteria  normal  0.730778  n/a   
 
 
-
 
NC_009708  YpsIP31758_2639  arginine ABC transporter, periplasmic substrate-binding protein ArtJ  32.44 
 
 
243 aa  118  9.999999999999999e-26  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.000000964568  n/a   
 
 
-
 
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