More than 300 homologs were found in PanDaTox collection
for query gene Plav_0065 on replicon NC_009719
Organism: Parvibaculum lavamentivorans DS-1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009719  Plav_0065  response regulator receiver protein  100 
 
 
129 aa  262  1e-69  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.909835 
 
 
-
 
NC_009052  Sbal_2050  two component transcriptional regulator  36.84 
 
 
226 aa  65.9  0.0000000002  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_2416  two component transcriptional regulator  36.84 
 
 
226 aa  65.1  0.0000000003  Shewanella baltica OS195  Bacteria  normal  0.134995  hitchhiker  0.000110965 
 
 
-
 
NC_011663  Sbal223_2046  two component transcriptional regulator, winged helix family  36.84 
 
 
226 aa  64.7  0.0000000004  Shewanella baltica OS223  Bacteria  normal  0.095715  hitchhiker  0.000000000691151 
 
 
-
 
NC_009665  Shew185_2301  two component transcriptional regulator  36.84 
 
 
226 aa  64.7  0.0000000004  Shewanella baltica OS185  Bacteria  hitchhiker  0.00729091  n/a   
 
 
-
 
NC_011729  PCC7424_3637  two component transcriptional regulator, winged helix family  32.26 
 
 
246 aa  63.9  0.0000000007  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008312  Tery_4937  two component transcriptional regulator  33.87 
 
 
257 aa  63.9  0.0000000008  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.565868 
 
 
-
 
NC_008709  Ping_2025  cyclic-di-GMP regulatory protein  33.33 
 
 
390 aa  63.5  0.0000000009  Psychromonas ingrahamii 37  Bacteria  normal  0.100945  normal  0.0489408 
 
 
-
 
NC_011726  PCC8801_1936  two component transcriptional regulator, winged helix family  32.26 
 
 
246 aa  62.8  0.000000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_012034  Athe_1751  two component transcriptional regulator, winged helix family  29.06 
 
 
234 aa  62.8  0.000000002  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_1963  two component transcriptional regulator, winged helix family  32.26 
 
 
246 aa  62.8  0.000000002  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.470012 
 
 
-
 
NC_007955  Mbur_0695  response regulator receiver  37.39 
 
 
170 aa  62  0.000000002  Methanococcoides burtonii DSM 6242  Archaea  normal  0.412637  n/a   
 
 
-
 
NC_011891  A2cp1_3985  response regulator receiver protein  31.78 
 
 
125 aa  62.8  0.000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3907  response regulator receiver protein  32.56 
 
 
125 aa  62  0.000000003  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_1618  nitrogen metabolism transcriptional regulator, NtrC, Fis family  35 
 
 
486 aa  61.6  0.000000003  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2309  response regulator receiver modulated diguanylate cyclase  32.77 
 
 
434 aa  61.2  0.000000004  Anaeromyxobacter sp. K  Bacteria  normal  0.484645  n/a   
 
 
-
 
NC_011891  A2cp1_2397  response regulator receiver modulated diguanylate cyclase  32.77 
 
 
434 aa  61.2  0.000000004  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.593336  n/a   
 
 
-
 
NC_011830  Dhaf_0198  two component, sigma54 specific, transcriptional regulator, Fis family  29.17 
 
 
461 aa  61.2  0.000000005  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1847  two component, sigma54 specific, Fis family transcriptional regulator  34.43 
 
 
459 aa  60.8  0.000000006  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.122843  normal  0.436579 
 
 
-
 
NC_013132  Cpin_3745  response regulator receiver sensor signal transduction histidine kinase  35.96 
 
 
1010 aa  60.5  0.000000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.412805  hitchhiker  0.00597184 
 
 
-
 
NC_008709  Ping_0483  cyclic-di-GMP regulatory protein  33.33 
 
 
406 aa  60.5  0.000000008  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_4779  two component, sigma54 specific, transcriptional regulator, Fis family  34.71 
 
 
494 aa  60.5  0.000000008  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2426  DNA-binding response regulator  32.46 
 
 
237 aa  60.1  0.000000009  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009253  Dred_1312  two component, sigma54 specific, Fis family transcriptional regulator  30.89 
 
 
455 aa  60.1  0.000000009  Desulfotomaculum reducens MI-1  Bacteria  normal  0.502008  n/a   
 
 
-
 
NC_009767  Rcas_3604  putative PAS/PAC sensor protein  33.63 
 
 
619 aa  60.5  0.000000009  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.562878 
 
 
-
 
NC_007413  Ava_1498  two component transcriptional regulator  31.45 
 
 
247 aa  59.7  0.00000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.220919  normal 
 
 
-
 
NC_013216  Dtox_1013  two component, sigma54 specific, transcriptional regulator, Fis family  27.42 
 
 
456 aa  59.7  0.00000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.0616674 
 
 
-
 
NC_014248  Aazo_5207  winged helix family two component transcriptional regulator  31.45 
 
 
247 aa  59.7  0.00000001  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3468  response regulator receiver modulated diguanylate cyclase  31.58 
 
 
412 aa  59.3  0.00000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1886  two component, sigma54 specific, transcriptional regulator, Fis family  31.97 
 
 
461 aa  58.9  0.00000002  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_5930  nitrogen metabolism transcriptional regulator, NtrC, Fis family  32.5 
 
 
486 aa  59.3  0.00000002  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.461096 
 
 
-
 
NC_007604  Synpcc7942_0095  two component transcriptional regulator  32.26 
 
 
249 aa  59.3  0.00000002  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_1992  two component, sigma54 specific, Fis family transcriptional regulator  31.97 
 
 
460 aa  58.9  0.00000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3844  response regulator receiver domain-containing protein  33.04 
 
 
124 aa  58.9  0.00000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_00535  Transcriptional regulatory protein CpxR  35.59 
 
 
247 aa  59.3  0.00000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.774728  n/a   
 
 
-
 
NC_009667  Oant_2072  nitrogen metabolism transcriptional regulator, NtrC, Fis family  32.5 
 
 
490 aa  59.3  0.00000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2947  multi-sensor signal transduction histidine kinase  32.74 
 
 
503 aa  59.3  0.00000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_3742  two component transcriptional regulator, winged helix family  32.26 
 
 
263 aa  59.3  0.00000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_6539  nitrogen metabolism transcriptional regulator, NtrC, Fis Family  32.5 
 
 
485 aa  59.3  0.00000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2017  response regulator receiver modulated metal dependent phosphohydrolase  29.57 
 
 
379 aa  58.9  0.00000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.98115  n/a   
 
 
-
 
NC_010001  Cphy_3334  two component transcriptional regulator  33.72 
 
 
223 aa  59.3  0.00000002  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_0485  nitrogen metabolism transcriptional regulator, NtrC, Fis Family  34.17 
 
 
482 aa  58.5  0.00000003  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.0514361  normal  0.01861 
 
 
-
 
NC_010581  Bind_1519  nitrogen metabolism transcriptional regulator, NtrC, Fis family  31.67 
 
 
493 aa  58.5  0.00000003  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.0767712 
 
 
-
 
NC_011729  PCC7424_2188  response regulator receiver sensor signal transduction histidine kinase  33.62 
 
 
384 aa  58.9  0.00000003  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00677544 
 
 
-
 
NC_004310  BR1117  nitrogen regulation protein NtrC  33.33 
 
 
491 aa  58.2  0.00000004  Brucella suis 1330  Bacteria  normal  0.837071  n/a   
 
 
-
 
NC_010725  Mpop_2938  nitrogen metabolism transcriptional regulator, NtrC, Fis Family  32.5 
 
 
488 aa  58.2  0.00000004  Methylobacterium populi BJ001  Bacteria  normal  0.337195  normal 
 
 
-
 
NC_007413  Ava_0124  response regulator receiver Signal transduction histidine kinase  35.78 
 
 
470 aa  57.8  0.00000004  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1678  nitrogen metabolism transcriptional regulator, NtrC, Fis family  30.83 
 
 
481 aa  58.2  0.00000004  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.510429  n/a   
 
 
-
 
NC_009484  Acry_2034  nitrogen metabolism transcriptional regulator, NtrC, Fis family  33.33 
 
 
487 aa  58.2  0.00000004  Acidiphilium cryptum JF-5  Bacteria  normal  0.669583  n/a   
 
 
-
 
NC_009505  BOV_1075  nitrogen regulation protein NR(I)  33.33 
 
 
491 aa  58.2  0.00000004  Brucella ovis ATCC 25840  Bacteria  hitchhiker  0.00433068  n/a   
 
 
-
 
NC_008554  Sfum_0643  two component, sigma54 specific, Fis family transcriptional regulator  33.06 
 
 
478 aa  57.8  0.00000004  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3047  nitrogen metabolism transcriptional regulator, NtrC, Fis Family  32.5 
 
 
490 aa  57.8  0.00000005  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.106277  normal 
 
 
-
 
NC_010172  Mext_2820  nitrogen regulation protein NR(I)  32.5 
 
 
490 aa  57.8  0.00000005  Methylobacterium extorquens PA1  Bacteria  normal  0.122991  normal  0.465253 
 
 
-
 
NC_010717  PXO_00241  VirG  31.58 
 
 
258 aa  57.8  0.00000005  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_5311  two component transcriptional regulator  33.91 
 
 
246 aa  57.8  0.00000005  Frankia sp. EAN1pec  Bacteria  normal  0.554395  normal  0.310406 
 
 
-
 
NC_009428  Rsph17025_0504  response regulator receiver protein  30.83 
 
 
129 aa  57.8  0.00000005  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0548558  normal  0.11151 
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  31.45 
 
 
383 aa  57.8  0.00000006  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_011729  PCC7424_1976  multi-sensor signal transduction histidine kinase  34.21 
 
 
1383 aa  57.4  0.00000006  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.624185 
 
 
-
 
NC_007413  Ava_1086  multi-sensor hybrid histidine kinase  36.84 
 
 
1431 aa  57  0.00000009  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_1409  two component signal transduction response regulator  28.93 
 
 
123 aa  57  0.00000009  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000120114  n/a   
 
 
-
 
NC_010524  Lcho_0237  response regulator receiver protein  33.33 
 
 
124 aa  57  0.00000009  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000555979 
 
 
-
 
NC_013037  Dfer_2246  multi-sensor hybrid histidine kinase  29.41 
 
 
1084 aa  57  0.00000009  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.692403 
 
 
-
 
NC_013223  Dret_0887  response regulator receiver modulated metal dependent phosphohydrolase  33.04 
 
 
496 aa  57  0.00000009  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.384329  normal 
 
 
-
 
NC_013739  Cwoe_3140  response regulator receiver protein  33.07 
 
 
128 aa  56.6  0.0000001  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.797309 
 
 
-
 
NC_002939  GSU1102  DNA-binding response regulator  33.63 
 
 
225 aa  56.2  0.0000001  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_3129  nitrogen metabolism transcriptional regulator, NtrC, Fis family  34.17 
 
 
480 aa  56.6  0.0000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.736803  normal  0.276266 
 
 
-
 
NC_009675  Anae109_1012  response regulator receiver protein  32.5 
 
 
120 aa  56.2  0.0000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.175734  normal  0.0400951 
 
 
-
 
NC_007298  Daro_1632  response regulator receiver  29.82 
 
 
123 aa  56.2  0.0000001  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0605  adenylate/guanylate cyclase  36.04 
 
 
355 aa  56.2  0.0000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.657653  n/a   
 
 
-
 
NC_009049  Rsph17029_1805  response regulator receiver protein  30.97 
 
 
122 aa  56.6  0.0000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.422276 
 
 
-
 
NC_010505  Mrad2831_2168  nitrogen metabolism transcriptional regulator, NtrC, Fis family  32.5 
 
 
488 aa  56.6  0.0000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0171  response regulator receiver protein  30.97 
 
 
122 aa  56.6  0.0000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_4070  nitrogen metabolism transcriptional regulator NtrC  32.5 
 
 
480 aa  56.6  0.0000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.131979  normal  0.446618 
 
 
-
 
NC_011369  Rleg2_1619  nitrogen metabolism transcriptional regulator, NtrC, Fis Family  31.67 
 
 
483 aa  56.2  0.0000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.463478  normal 
 
 
-
 
NC_010531  Pnec_1772  two component transcriptional regulator, Fis family  29.6 
 
 
227 aa  56.6  0.0000001  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.979845 
 
 
-
 
NC_013440  Hoch_5158  transcriptional regulator, XRE family  28.1 
 
 
198 aa  56.2  0.0000001  Haliangium ochraceum DSM 14365  Bacteria  normal  0.503819  normal  0.690311 
 
 
-
 
NC_007778  RPB_2882  nitrogen metabolism transcriptional regulator NtrC  32.5 
 
 
480 aa  56.6  0.0000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.173418  normal 
 
 
-
 
NC_012850  Rleg_1812  nitrogen metabolism transcriptional regulator, NtrC, Fis Family  31.67 
 
 
483 aa  56.2  0.0000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.558233  hitchhiker  0.00750422 
 
 
-
 
NC_007925  RPC_2578  nitrogen metabolism transcriptional regulator NtrC  32.5 
 
 
480 aa  56.2  0.0000001  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.152448  normal  0.275348 
 
 
-
 
NC_010577  XfasM23_2026  two component transcriptional regulator  32.76 
 
 
225 aa  56.6  0.0000001  Xylella fastidiosa M23  Bacteria  normal  0.117597  n/a   
 
 
-
 
NC_007958  RPD_2590  nitrogen metabolism transcriptional regulator NtrC  32.5 
 
 
480 aa  56.6  0.0000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.858566  normal  0.0152229 
 
 
-
 
NC_013061  Phep_3340  response regulator receiver  28.33 
 
 
131 aa  56.2  0.0000001  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.269643 
 
 
-
 
NC_009720  Xaut_4399  nitrogen metabolism transcriptional regulator, NtrC, Fis family  32.5 
 
 
482 aa  57  0.0000001  Xanthobacter autotrophicus Py2  Bacteria  normal  0.222867  normal 
 
 
-
 
NC_011666  Msil_0529  nitrogen metabolism transcriptional regulator, NtrC, Fis Family  31.67 
 
 
491 aa  56.2  0.0000001  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_011004  Rpal_2863  nitrogen metabolism transcriptional regulator, NtrC, Fis Family  32.5 
 
 
480 aa  56.2  0.0000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  28.93 
 
 
461 aa  55.8  0.0000002  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_009712  Mboo_1936  response regulator receiver protein  29.03 
 
 
221 aa  55.8  0.0000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.941096  normal 
 
 
-
 
NC_012892  B21_02106  hypothetical protein  28.93 
 
 
461 aa  55.8  0.0000002  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2946  response regulator receiver protein  35.14 
 
 
124 aa  55.5  0.0000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_2620  two component, sigma54 specific, Fis family transcriptional regulator  33.88 
 
 
532 aa  55.8  0.0000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.0658498  normal 
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  28.93 
 
 
461 aa  55.8  0.0000002  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
NC_011662  Tmz1t_2649  response regulator receiver protein  28.07 
 
 
122 aa  55.8  0.0000002  Thauera sp. MZ1T  Bacteria  normal  0.857048  n/a   
 
 
-
 
NC_007760  Adeh_1556  response regulator receiver modulated diguanylate cyclase  31.62 
 
 
300 aa  56.2  0.0000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_2135  nitrogen regulation protein NR(I)  31.67 
 
 
483 aa  56.2  0.0000002  Agrobacterium vitis S4  Bacteria  normal  0.13203  n/a   
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  28.93 
 
 
461 aa  55.8  0.0000002  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_013061  Phep_4244  response regulator receiver  27.5 
 
 
120 aa  55.8  0.0000002  Pedobacter heparinus DSM 2366  Bacteria  normal  0.231952  normal 
 
 
-
 
NC_008322  Shewmr7_2074  two component transcriptional regulator  32.46 
 
 
226 aa  56.2  0.0000002  Shewanella sp. MR-7  Bacteria  decreased coverage  0.00164535  hitchhiker  0.00140528 
 
 
-
 
NC_008527  LACR_1701  DNA-binding response regulator  33.04 
 
 
230 aa  55.8  0.0000002  Lactococcus lactis subsp. cremoris SK11  Bacteria  hitchhiker  0.00672994  n/a   
 
 
-
 
NC_009636  Smed_1090  nitrogen metabolism transcriptional regulator, NtrC, Fis family  31.67 
 
 
484 aa  55.8  0.0000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.440204  normal 
 
 
-
 
NC_008609  Ppro_0435  response regulator receiver protein  28.69 
 
 
124 aa  55.5  0.0000002  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00876892  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>