6 homologs were found in PanDaTox collection
for query gene Pden_4978 on replicon NC_008688
Organism: Paracoccus denitrificans PD1222



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008688  Pden_4978  hypothetical protein  100 
 
 
416 aa  835    Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.156793 
 
 
-
 
NC_008686  Pden_0849  putative outer membrane protein  32.43 
 
 
199 aa  53.1  0.000008  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_2979  outer membrane protein  35.24 
 
 
212 aa  49.3  0.0001  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0118  outer membrane protein, putative  30.22 
 
 
230 aa  48.1  0.0003  Brucella suis 1330  Bacteria  normal  0.350872  n/a   
 
 
-
 
NC_009505  BOV_0115  putative outer membrane protein  30.22 
 
 
230 aa  48.1  0.0003  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0080  beta-lactamase domain protein  24.18 
 
 
319 aa  43.1  0.008  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
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