48 homologs were found in PanDaTox collection
for query gene Pden_4812 on replicon NC_008688
Organism: Paracoccus denitrificans PD1222



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008688  Pden_4812  PaaX domain-containing protein  100 
 
 
284 aa  565  1e-160  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.33483 
 
 
-
 
NC_011894  Mnod_3357  transcriptional regulator, PaaX family  45.14 
 
 
301 aa  202  4e-51  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4146  PaaX family transcriptional regulator  43.53 
 
 
305 aa  180  2.9999999999999997e-44  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.85173 
 
 
-
 
NC_009654  Mmwyl1_3103  PaaX family transcriptional regulator  31.65 
 
 
307 aa  156  3e-37  Marinomonas sp. MWYL1  Bacteria  decreased coverage  0.000000661945  decreased coverage  0.0000397547 
 
 
-
 
NC_007925  RPC_0692  phenylacetic acid degradation operon negative regulatory protein PaaX  38.89 
 
 
287 aa  153  4e-36  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.717402  normal 
 
 
-
 
NC_002947  PP_3286  PaaX family transcriptional regulator  32.32 
 
 
307 aa  147  3e-34  Pseudomonas putida KT2440  Bacteria  normal  0.17765  normal 
 
 
-
 
NC_009512  Pput_2473  PaaX family transcriptional regulator  32.78 
 
 
334 aa  146  3e-34  Pseudomonas putida F1  Bacteria  normal  0.303711  normal 
 
 
-
 
NC_010501  PputW619_2623  PaaX family transcriptional regulator  32.63 
 
 
334 aa  143  3e-33  Pseudomonas putida W619  Bacteria  normal  0.312733  normal  0.0873289 
 
 
-
 
NC_009485  BBta_2864  phenylacetic acid degradation operon negative regulatory protein paaX  37.94 
 
 
293 aa  143  3e-33  Bradyrhizobium sp. BTAi1  Bacteria  decreased coverage  0.00499823  normal  0.0484276 
 
 
-
 
NC_007298  Daro_0386  phenylacetic acid degradation operon negative regulatory protein PaaX  32.98 
 
 
352 aa  142  5e-33  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.0000000187716  normal  0.0170462 
 
 
-
 
NC_009720  Xaut_0895  PaaX family transcriptional regulator  39.23 
 
 
305 aa  142  9e-33  Xanthobacter autotrophicus Py2  Bacteria  normal  0.947925  normal 
 
 
-
 
NC_010322  PputGB1_2610  PaaX family transcriptional regulator  31 
 
 
334 aa  141  9.999999999999999e-33  Pseudomonas putida GB-1  Bacteria  normal  0.218497  normal  0.0704814 
 
 
-
 
NC_011894  Mnod_7200  transcriptional regulator, PaaX family  37.89 
 
 
292 aa  128  9.000000000000001e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.803046  n/a   
 
 
-
 
NC_010506  Swoo_0216  PaaX family transcriptional regulator  30.34 
 
 
311 aa  126  5e-28  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.0165647 
 
 
-
 
NC_009484  Acry_0094  PaaX family transcriptional regulator  36.7 
 
 
289 aa  125  8.000000000000001e-28  Acidiphilium cryptum JF-5  Bacteria  normal  0.339453  n/a   
 
 
-
 
NC_011662  Tmz1t_1514  transcriptional regulator, PaaX family  33.11 
 
 
316 aa  124  1e-27  Thauera sp. MZ1T  Bacteria  normal  0.139923  n/a   
 
 
-
 
NC_007958  RPD_1521  phenylacetic acid degradation operon negative regulatory protein PaaX  31.79 
 
 
312 aa  124  2e-27  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_0196  transcriptional regulator, PaaX family  33.22 
 
 
319 aa  122  5e-27  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B3734  phenylacetic acid degradation operon negative regulatory protein PaaX  32.86 
 
 
307 aa  117  3e-25  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2859  transcriptional regulator, PaaX family  29.08 
 
 
285 aa  114  2.0000000000000002e-24  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009801  EcE24377A_1585  phenylacetic acid degradation operon negative regulatory protein PaaX  30.18 
 
 
316 aa  113  3e-24  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2246  transcriptional regulator, PaaX family  30.18 
 
 
316 aa  113  4.0000000000000004e-24  Escherichia coli DH1  Bacteria  normal  0.218129  n/a   
 
 
-
 
NC_010468  EcolC_2256  PaaX family transcriptional regulator  29.82 
 
 
316 aa  112  9e-24  Escherichia coli ATCC 8739  Bacteria  normal  0.203735  normal 
 
 
-
 
NC_009800  EcHS_A1486  phenylacetic acid degradation operon negative regulatory protein PaaX  29.82 
 
 
316 aa  112  9e-24  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3083  PaaX family transcriptional regulator  28.28 
 
 
312 aa  110  3e-23  Serratia proteamaculans 568  Bacteria  normal  normal  0.415086 
 
 
-
 
NC_008709  Ping_0661  PaaX domain-containing protein, C- domain  25.53 
 
 
285 aa  105  1e-21  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0655  PaaX family transcriptional regulator  28.83 
 
 
272 aa  83.2  0.000000000000004  Salinispora arenicola CNS-205  Bacteria  normal  0.0748596  hitchhiker  0.00291671 
 
 
-
 
NC_009380  Strop_0708  PaaX family transcriptional regulator  30.38 
 
 
272 aa  83.6  0.000000000000004  Salinispora tropica CNB-440  Bacteria  normal  0.719013  normal  0.640912 
 
 
-
 
NC_013411  GYMC61_2835  transcriptional regulator, PaaX family  26.04 
 
 
285 aa  79.7  0.00000000000005  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013946  Mrub_2629  PaaX family transcriptional regulator  28.8 
 
 
259 aa  78.6  0.0000000000001  Meiothermus ruber DSM 1279  Bacteria  normal  0.495501  normal 
 
 
-
 
NC_013739  Cwoe_2150  transcriptional regulator, PaaX family  28 
 
 
289 aa  75.9  0.0000000000008  Conexibacter woesei DSM 14684  Bacteria  normal  0.933136  normal  0.276366 
 
 
-
 
NC_013947  Snas_0703  transcriptional regulator, PaaX family  29.66 
 
 
259 aa  75.5  0.0000000000009  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1206  PaaX domain-containing protein, C- domain  31.68 
 
 
258 aa  75.5  0.0000000000009  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_2009  transcriptional regulator, PaaX family  26.25 
 
 
281 aa  74.7  0.000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.429433  normal 
 
 
-
 
NC_014212  Mesil_0980  transcriptional regulator, PaaX family  29.44 
 
 
259 aa  68.2  0.0000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.148761 
 
 
-
 
NC_013235  Namu_0588  transcriptional regulator, PaaX family  26.86 
 
 
276 aa  65.1  0.000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_8420  putative transcriptional regulator, PaaX family  30.65 
 
 
260 aa  63.9  0.000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.289328  normal 
 
 
-
 
NC_013093  Amir_0787  transcriptional regulator, PaaX family  28.02 
 
 
268 aa  62.4  0.000000009  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_19070  phenylacetic acid-responsive transcriptional repressor  27.84 
 
 
292 aa  60.8  0.00000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0202563  normal 
 
 
-
 
NC_014165  Tbis_1609  PaaX family transcriptional regulator  26.8 
 
 
258 aa  57  0.0000003  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_0309  transcriptional regulator, PaaX family  28.92 
 
 
302 aa  56.6  0.0000005  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_6455  transcriptional regulator, PaaX family  27.71 
 
 
260 aa  55.8  0.0000008  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_0294  transcriptional regulator, PaaX family  26.59 
 
 
318 aa  55.1  0.000001  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0429653  hitchhiker  0.0000864342 
 
 
-
 
NC_013131  Caci_4899  transcriptional regulator, PaaX family  24.11 
 
 
276 aa  50.8  0.00003  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.425131  normal 
 
 
-
 
NC_009565  TBFG_10688  hypothetical protein  29.11 
 
 
240 aa  48.9  0.00009  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_0289  transcriptional regulator, PaaX family  27.03 
 
 
280 aa  44.7  0.002  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.010887  hitchhiker  0.0000784974 
 
 
-
 
NC_008044  TM1040_0436  PaaX-like  25 
 
 
301 aa  43.5  0.004  Ruegeria sp. TM1040  Bacteria  normal  normal  0.581976 
 
 
-
 
NC_009956  Dshi_3828  PaaX family transcriptional regulator  22.97 
 
 
264 aa  42.4  0.01  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.648927  normal 
 
 
-
 
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