More than 300 homologs were found in PanDaTox collection
for query gene Pden_4377 on replicon NC_008687
Organism: Paracoccus denitrificans PD1222



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010465  YPK_1117  ribonucleotide-diphosphate reductase subunit alpha  75.95 
 
 
716 aa  1156    Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02531  ribonucleotide-diphosphate reductase alpha subunit  71.18 
 
 
714 aa  1061    Escherichia coli BL21(DE3)  Bacteria  normal  0.913522  n/a   
 
 
-
 
CP001637  EcDH1_1008  ribonucleoside-diphosphate reductase, alpha subunit  71.18 
 
 
701 aa  1062    Escherichia coli DH1  Bacteria  normal  0.0182534  n/a   
 
 
-
 
NC_009504  BOV_A0292  ribonucleotide-diphosphate reductase subunit alpha  79.89 
 
 
713 aa  1180    Brucella ovis ATCC 25840  Bacteria  normal  0.201998  n/a   
 
 
-
 
NC_013530  Xcel_2437  ribonucleoside-diphosphate reductase, alpha subunit  73.5 
 
 
718 aa  1095    Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.260563  n/a   
 
 
-
 
NC_009077  Mjls_1798  ribonucleotide-diphosphate reductase subunit alpha  74.89 
 
 
693 aa  1108    Mycobacterium sp. JLS  Bacteria  normal  0.203232  normal 
 
 
-
 
NC_011094  SeSA_A2955  ribonucleotide-diphosphate reductase subunit alpha  70.64 
 
 
714 aa  1051    Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.0229342 
 
 
-
 
NC_003909  BCE_1470  ribonucleotide-diphosphate reductase subunit alpha  46.48 
 
 
694 aa  662    Bacillus cereus ATCC 10987  Bacteria  normal  0.581148  n/a   
 
 
-
 
NC_004116  SAG0420  ribonucleotide-diphosphate reductase subunit alpha  57.26 
 
 
721 aa  817    Streptococcus agalactiae 2603V/R  Bacteria  normal  0.290215  n/a   
 
 
-
 
NC_004116  SAG0819  ribonucleotide-diphosphate reductase subunit alpha  50.7 
 
 
719 aa  738    Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0316  ribonucleotide-diphosphate reductase subunit alpha  79.89 
 
 
713 aa  1180    Brucella suis 1330  Bacteria  normal  0.748389  n/a   
 
 
-
 
NC_009436  Ent638_3155  ribonucleotide-diphosphate reductase subunit alpha  71.21 
 
 
705 aa  1058    Enterobacter sp. 638  Bacteria  normal  0.0294592  normal 
 
 
-
 
NC_010498  EcSMS35_2797  ribonucleotide-diphosphate reductase subunit alpha  71.18 
 
 
714 aa  1058    Escherichia coli SMS-3-5  Bacteria  normal  0.708424  normal  0.0256138 
 
 
-
 
NC_006055  Mfl528  ribonucleotide-diphosphate reductase subunit alpha  55.59 
 
 
721 aa  785    Mesoplasma florum L1  Bacteria  normal  n/a   
 
 
-
 
NC_011879  Achl_4460  ribonucleoside-diphosphate reductase, alpha subunit  74.54 
 
 
726 aa  1094    Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000339038 
 
 
-
 
NC_012850  Rleg_3793  ribonucleotide-diphosphate reductase subunit alpha  79.74 
 
 
716 aa  1181    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_013721  HMPREF0424_0177  ribonucleoside-diphosphate reductase, alpha subunit  65.96 
 
 
741 aa  975    Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_013517  Sterm_2765  ribonucleoside-diphosphate reductase, alpha subunit  43.62 
 
 
696 aa  637    Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_3919  ribonucleotide-diphosphate reductase subunit alpha  70.92 
 
 
714 aa  1061    Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.109191 
 
 
-
 
NC_009708  YpsIP31758_1063  ribonucleotide-diphosphate reductase subunit alpha  76.1 
 
 
716 aa  1159    Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.294535  n/a   
 
 
-
 
NC_009664  Krad_0805  ribonucleoside-diphosphate reductase, alpha subunit  72.96 
 
 
720 aa  1080    Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1012  ribonucleoside-diphosphate reductase, alpha subunit  68.87 
 
 
715 aa  1035    Dickeya zeae Ech1591  Bacteria  normal  0.312798  n/a   
 
 
-
 
NC_012803  Mlut_10490  ribonucleotide-diphosphate reductase subunit alpha  75.89 
 
 
725 aa  1130    Micrococcus luteus NCTC 2665  Bacteria  normal  0.0211585  n/a   
 
 
-
 
NC_011772  BCG9842_B3938  ribonucleotide-diphosphate reductase subunit alpha  47.2 
 
 
682 aa  659    Bacillus cereus G9842  Bacteria  normal  0.0225343  normal  0.149352 
 
 
-
 
NC_013515  Smon_0541  ribonucleoside-diphosphate reductase, alpha subunit  43.53 
 
 
694 aa  637    Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_011083  SeHA_C2990  ribonucleotide-diphosphate reductase subunit alpha  70.64 
 
 
714 aa  1051    Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.0690865 
 
 
-
 
NC_009801  EcE24377A_2956  ribonucleotide-diphosphate reductase subunit alpha  70.61 
 
 
714 aa  1053    Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_13067  ribonucleotide-diphosphate reductase subunit alpha  75.78 
 
 
725 aa  1131    Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.134341 
 
 
-
 
NC_007530  GBAA_1371  ribonucleotide-diphosphate reductase subunit alpha  46.48 
 
 
694 aa  662    Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.356009  n/a   
 
 
-
 
NC_013521  Sked_10200  ribonucleoside-diphosphate reductase class Ib alpha subunit  74.03 
 
 
693 aa  1096    Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0985142  normal  0.889698 
 
 
-
 
NC_014158  Tpau_2969  ribonucleoside-diphosphate reductase, alpha subunit  75.78 
 
 
727 aa  1140    Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.0677187  n/a   
 
 
-
 
NC_007633  MCAP_0101  ribonucleotide-diphosphate reductase subunit alpha  54.39 
 
 
720 aa  773    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1031  ribonucleotide-diphosphate reductase subunit alpha  71.18 
 
 
701 aa  1061    Escherichia coli ATCC 8739  Bacteria  normal  normal  0.578338 
 
 
-
 
NC_012669  Bcav_0097  ribonucleoside-diphosphate reductase, alpha subunit  76.18 
 
 
701 aa  1125    Beutenbergia cavernae DSM 12333  Bacteria  normal  0.361083  normal 
 
 
-
 
NC_013172  Bfae_24910  ribonucleoside-diphosphate reductase class Ib alpha subunit  73.93 
 
 
710 aa  1090    Brachybacterium faecium DSM 4810  Bacteria  normal  0.456629  n/a   
 
 
-
 
NC_014151  Cfla_0448  ribonucleoside-diphosphate reductase, alpha subunit  76.03 
 
 
719 aa  1125    Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_3289  ribonucleoside-diphosphate reductase, alpha subunit  74.96 
 
 
731 aa  1122    Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3498  ribonucleotide-diphosphate reductase subunit alpha  79.74 
 
 
734 aa  1183    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.68822 
 
 
-
 
NC_013174  Jden_1752  ribonucleoside-diphosphate reductase, alpha subunit  75.5 
 
 
705 aa  1130    Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.0635654 
 
 
-
 
NC_011205  SeD_A3113  ribonucleotide-diphosphate reductase subunit alpha  70.5 
 
 
714 aa  1050    Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.678613 
 
 
-
 
NC_011149  SeAg_B2924  ribonucleotide-diphosphate reductase subunit alpha  70.5 
 
 
714 aa  1049    Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3723  ribonucleotide-diphosphate reductase subunit alpha  77.46 
 
 
714 aa  1150    Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0379  ribonucleoside-diphosphate reductase class Ib alpha subunit  76.6 
 
 
723 aa  1136    Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011981  Avi_7387  ribonucleotide-diphosphate reductase subunit alpha  79.37 
 
 
693 aa  1157    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3133  ribonucleotide-diphosphate reductase subunit alpha  76.89 
 
 
721 aa  1147    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_02495  hypothetical protein  71.18 
 
 
714 aa  1061    Escherichia coli BL21  Bacteria  normal  0.953143  n/a   
 
 
-
 
NC_008044  TM1040_0519  ribonucleotide-diphosphate reductase subunit alpha  83.1 
 
 
710 aa  1244    Ruegeria sp. TM1040  Bacteria  normal  0.356261  normal  0.0658989 
 
 
-
 
NC_009668  Oant_2954  ribonucleotide-diphosphate reductase subunit alpha  79.6 
 
 
739 aa  1179    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_1462  ribonucleotide-diphosphate reductase subunit alpha  69.41 
 
 
731 aa  1008    Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_1817  ribonucleotide-diphosphate reductase subunit alpha  74.89 
 
 
693 aa  1108    Mycobacterium sp. MCS  Bacteria  normal  0.611575  n/a   
 
 
-
 
NC_011080  SNSL254_A3007  ribonucleotide-diphosphate reductase subunit alpha  70.5 
 
 
714 aa  1051    Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  hitchhiker  0.00467921 
 
 
-
 
NC_013421  Pecwa_1146  ribonucleotide-diphosphate reductase subunit alpha  77.03 
 
 
721 aa  1152    Pectobacterium wasabiae WPP163  Bacteria  normal  0.749784  n/a   
 
 
-
 
NC_009338  Mflv_4305  ribonucleotide-diphosphate reductase subunit alpha  75.04 
 
 
701 aa  1120    Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009513  Lreu_0323  ribonucleotide-diphosphate reductase subunit alpha  50.97 
 
 
723 aa  765    Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E3204  ribonucleotide-diphosphate reductase subunit alpha  71.47 
 
 
714 aa  1060    Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_2117  ribonucleotide-diphosphate reductase subunit alpha  75.68 
 
 
712 aa  1132    Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000179447 
 
 
-
 
NC_008527  LACR_1061  ribonucleotide-diphosphate reductase subunit alpha  53.21 
 
 
722 aa  763    Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.50042  n/a   
 
 
-
 
NC_008528  OEOE_0140  ribonucleotide-diphosphate reductase subunit alpha  47.27 
 
 
723 aa  707    Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008531  LEUM_0254  ribonucleotide-diphosphate reductase subunit alpha  49.44 
 
 
723 aa  742    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_008532  STER_1248  ribonucleotide-diphosphate reductase subunit alpha  51.96 
 
 
719 aa  759    Streptococcus thermophilus LMD-9  Bacteria  normal  0.514048  n/a   
 
 
-
 
NC_008541  Arth_2356  ribonucleotide-diphosphate reductase subunit alpha  75.68 
 
 
727 aa  1134    Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2811  ribonucleotide-diphosphate reductase subunit alpha  71.18 
 
 
714 aa  1061    Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_2042  ribonucleotide-diphosphate reductase subunit alpha  74.65 
 
 
722 aa  1130    Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.721835 
 
 
-
 
NC_008687  Pden_4377  ribonucleotide-diphosphate reductase subunit alpha  100 
 
 
708 aa  1466    Paracoccus denitrificans PD1222  Bacteria  normal  0.692783  normal  0.664042 
 
 
-
 
NC_011725  BCB4264_A1405  ribonucleotide-diphosphate reductase subunit alpha  47.2 
 
 
682 aa  660    Bacillus cereus B4264  Bacteria  normal  0.208347  n/a   
 
 
-
 
NC_010159  YpAngola_A3538  ribonucleotide-diphosphate reductase subunit alpha  75.81 
 
 
716 aa  1152    Yersinia pestis Angola  Bacteria  normal  0.0368107  decreased coverage  0.00084193 
 
 
-
 
NC_008705  Mkms_1864  ribonucleotide-diphosphate reductase subunit alpha  74.89 
 
 
693 aa  1108    Mycobacterium sp. KMS  Bacteria  normal  0.4812  normal  0.335133 
 
 
-
 
NC_008783  BARBAKC583_0356  ribonucleotide-diphosphate reductase subunit alpha  75 
 
 
716 aa  1123    Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_014213  Mesil_3415  NrdI protein  45.36 
 
 
692 aa  624  1e-177  Meiothermus silvanus DSM 9946  Bacteria  normal  0.183985  normal  0.510815 
 
 
-
 
NC_014213  Mesil_3233  hypothetical protein  45.36 
 
 
692 aa  624  1e-177  Meiothermus silvanus DSM 9946  Bacteria  normal  0.546818  normal 
 
 
-
 
NC_013946  Mrub_0969  ribonucleoside-diphosphate reductase subunit alpha  44.51 
 
 
691 aa  603  1.0000000000000001e-171  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_009487  SaurJH9_0755  ribonucleotide-diphosphate reductase subunit alpha  42.86 
 
 
701 aa  586  1e-166  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.627384  n/a   
 
 
-
 
NC_009632  SaurJH1_0772  ribonucleotide-diphosphate reductase subunit alpha  42.86 
 
 
701 aa  586  1e-166  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.424597  n/a   
 
 
-
 
NC_002976  SERP0397  ribonucleotide-diphosphate reductase subunit alpha  42.34 
 
 
701 aa  575  1.0000000000000001e-162  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_1774  ribonucleoside-diphosphate reductase, alpha subunit  41.37 
 
 
649 aa  522  1e-146  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.187024  normal 
 
 
-
 
NC_009674  Bcer98_1075  ribonucleoside-diphosphate reductase  45.06 
 
 
462 aa  437  1e-121  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1269  ribonucleoside-diphosphate reductase  45.11 
 
 
462 aa  437  1e-121  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.662266  n/a   
 
 
-
 
NC_005945  BAS1269  ribonucleoside-diphosphate reductase subunit alpha, group I intron-containing  43.6 
 
 
440 aa  404  1e-111  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_1241  ribonucleoside-diphosphate reductase alpha chain, C-terminal region  43.82 
 
 
440 aa  405  1e-111  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.957879  n/a   
 
 
-
 
NC_011773  BCAH820_1443  ribonucleoside-diphosphate reductase, alpha subunit, group I intron-containing  43.82 
 
 
440 aa  405  1e-111  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000000121197 
 
 
-
 
NC_006274  BCZK1242  ribonucleoside-diphosphate reductase, alpha subunit, N-terminal region  48.79 
 
 
376 aa  365  2e-99  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A1509  ribonucleoside-diphosphate reductase, subunit alpha  50.28 
 
 
364 aa  364  3e-99  Bacillus cereus AH187  Bacteria  hitchhiker  0.000257985  n/a   
 
 
-
 
NC_012793  GWCH70_0597  ribonucleotide-diphosphate reductase subunit alpha  33.04 
 
 
761 aa  326  9e-88  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP1513  truncated ribonucleoside-diphosphate reductase 2, alpha subunit  42.62 
 
 
969 aa  306  8.000000000000001e-82  Staphylococcus epidermidis RP62A  Bacteria  unclonable  0.00000128379  n/a   
 
 
-
 
NC_013411  GYMC61_1699  ribonucleotide-diphosphate reductase subunit alpha  32.21 
 
 
760 aa  303  8.000000000000001e-81  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011071  Smal_2296  ribonucleotide-diphosphate reductase subunit alpha  31.07 
 
 
787 aa  295  2e-78  Stenotrophomonas maltophilia R551-3  Bacteria  decreased coverage  0.00177695  normal  0.152718 
 
 
-
 
NC_010513  Xfasm12_0537  ribonucleotide-diphosphate reductase subunit alpha  30.7 
 
 
830 aa  280  8e-74  Xylella fastidiosa M12  Bacteria  normal  0.062299  n/a   
 
 
-
 
NC_010577  XfasM23_0474  ribonucleotide-diphosphate reductase subunit alpha  30.7 
 
 
830 aa  278  2e-73  Xylella fastidiosa M23  Bacteria  normal  0.836355  n/a   
 
 
-
 
NC_013205  Aaci_1599  ribonucleoside-diphosphate reductase, alpha subunit  30.57 
 
 
772 aa  278  3e-73  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  hitchhiker  0.0000761375  n/a   
 
 
-
 
NC_013204  Elen_2289  ribonucleotide-diphosphate reductase subunit alpha  30.6 
 
 
845 aa  277  4e-73  Eggerthella lenta DSM 2243  Bacteria  normal  0.172108  normal 
 
 
-
 
NC_010717  PXO_02897  ribonucleotide-diphosphate reductase subunit alpha  30.15 
 
 
832 aa  274  4.0000000000000004e-72  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A1510  ribonucleoside-diphosphate reductase, subunit alpha  43.9 
 
 
281 aa  272  1e-71  Bacillus cereus AH187  Bacteria  normal  0.167923  n/a   
 
 
-
 
NC_006274  BCZK1243  ribonucleoside-diphosphate reductase, alpha subunit, C-terminal region  43.9 
 
 
281 aa  271  2e-71  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_1700  ribonucleotide-diphosphate reductase subunit alpha  28.89 
 
 
842 aa  266  1e-69  Anaerococcus prevotii DSM 20548  Bacteria  hitchhiker  0.000192568  n/a   
 
 
-
 
NC_007963  Csal_0668  ribonucleotide-diphosphate reductase subunit alpha  31.11 
 
 
976 aa  266  1e-69  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.142133  n/a   
 
 
-
 
NC_008262  CPR_2356  ribonucleotide-diphosphate reductase subunit alpha  28.64 
 
 
743 aa  266  1e-69  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_0431  ribonucleoside-diphosphate reductase, alpha subunit  31.05 
 
 
926 aa  263  1e-68  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2671  ribonucleotide-diphosphate reductase subunit alpha  28.34 
 
 
743 aa  261  3e-68  Clostridium perfringens ATCC 13124  Bacteria  normal  0.267181  n/a   
 
 
-
 
NC_002967  TDE0341  ribonucleotide-diphosphate reductase subunit alpha  29.43 
 
 
845 aa  259  1e-67  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2621  ribonucleoside-diphosphate reductase, alpha subunit  30.83 
 
 
819 aa  259  1e-67  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.136472  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>