More than 300 homologs were found in PanDaTox collection
for query gene Pden_1049 on replicon NC_008686
Organism: Paracoccus denitrificans PD1222



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008686  Pden_1049  binding-protein-dependent transport systems inner membrane component  100 
 
 
280 aa  553  1e-156  Paracoccus denitrificans PD1222  Bacteria  normal  0.622209  normal 
 
 
-
 
NC_010003  Pmob_0307  binding-protein-dependent transport systems inner membrane component  40.51 
 
 
274 aa  208  1e-52  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_5740  binding-protein-dependent transport systems inner membrane component  40.07 
 
 
289 aa  204  1e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  0.872391  normal  0.176709 
 
 
-
 
NC_014212  Mesil_3058  binding-protein-dependent transport systems inner membrane component  41.57 
 
 
286 aa  201  9e-51  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0952  binding-protein-dependent transport systems inner membrane component  37.64 
 
 
271 aa  197  2.0000000000000003e-49  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_03310  binding-protein-dependent transport systems inner membrane component  36.4 
 
 
288 aa  193  3e-48  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3493  binding-protein-dependent transport systems inner membrane component  37.14 
 
 
316 aa  191  1e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.552575 
 
 
-
 
NC_011661  Dtur_1741  binding-protein-dependent transport systems inner membrane component  40.3 
 
 
281 aa  189  5.999999999999999e-47  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0669  binding-protein-dependent transport systems inner membrane component  41.16 
 
 
283 aa  189  5.999999999999999e-47  Thermotoga sp. RQ2  Bacteria  normal  0.586722  n/a   
 
 
-
 
NC_009636  Smed_2697  binding-protein-dependent transport systems inner membrane component  35.93 
 
 
293 aa  188  8e-47  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009486  Tpet_0644  binding-protein-dependent transport systems inner membrane component  40.22 
 
 
283 aa  186  5e-46  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000000450076  n/a   
 
 
-
 
NC_007963  Csal_2612  binding-protein-dependent transport systems inner membrane component  40 
 
 
276 aa  185  6e-46  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0549  ABC-type sugar / sn-glycerol-3-phosphate transport system permease protein ugpE  35.84 
 
 
272 aa  184  2.0000000000000003e-45  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2454  binding-protein-dependent transport systems inner membrane component  37.77 
 
 
286 aa  182  5.0000000000000004e-45  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2490  binding-protein-dependent transport systems inner membrane component  36.74 
 
 
279 aa  182  7e-45  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.961495  n/a   
 
 
-
 
NC_010003  Pmob_0029  binding-protein-dependent transport systems inner membrane component  35.51 
 
 
283 aa  180  2e-44  Petrotoga mobilis SJ95  Bacteria  unclonable  0.0000000511748  n/a   
 
 
-
 
NC_007494  RSP_3672  ABC sugar transporter, inner membrane subunit  36.2 
 
 
277 aa  180  2.9999999999999997e-44  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.191343  n/a   
 
 
-
 
NC_009050  Rsph17029_3407  binding-protein-dependent transport systems inner membrane component  36.2 
 
 
277 aa  180  2.9999999999999997e-44  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.353789  normal  0.790416 
 
 
-
 
NC_009708  YpsIP31758_2170  carbohydrate ABC transporter permease  37.02 
 
 
275 aa  179  5.999999999999999e-44  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0148377  n/a   
 
 
-
 
NC_010465  YPK_2278  binding-protein-dependent transport systems inner membrane component  37.02 
 
 
275 aa  179  5.999999999999999e-44  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0956  binding-protein-dependent transport systems inner membrane component  38.04 
 
 
278 aa  178  7e-44  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0972  binding-protein-dependent transport systems inner membrane component  38.04 
 
 
278 aa  178  7e-44  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.00136246  n/a   
 
 
-
 
NC_010159  YpAngola_A2084  carbohydrate ABC transporter permease  37.02 
 
 
275 aa  178  8e-44  Yersinia pestis Angola  Bacteria  normal  normal  0.101045 
 
 
-
 
NC_009077  Mjls_4735  binding-protein-dependent transport systems inner membrane component  39.15 
 
 
289 aa  178  9e-44  Mycobacterium sp. JLS  Bacteria  normal  0.820737  normal 
 
 
-
 
NC_008146  Mmcs_4355  binding-protein-dependent transport systems inner membrane component  39.15 
 
 
289 aa  178  9e-44  Mycobacterium sp. MCS  Bacteria  normal  0.023138  n/a   
 
 
-
 
NC_008705  Mkms_4441  binding-protein-dependent transport systems inner membrane component  39.15 
 
 
289 aa  178  9e-44  Mycobacterium sp. KMS  Bacteria  normal  normal  0.0617645 
 
 
-
 
NC_008010  Dgeo_2818  binding-protein-dependent transport systems inner membrane component  37.3 
 
 
255 aa  177  1e-43  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_1818  binding-protein-dependent transport systems inner membrane component  38.13 
 
 
279 aa  177  3e-43  Thermosipho melanesiensis BI429  Bacteria  normal  0.675174  n/a   
 
 
-
 
NC_010625  Bphy_6369  binding-protein-dependent transport systems inner membrane component  35.03 
 
 
317 aa  175  6e-43  Burkholderia phymatum STM815  Bacteria  normal  0.568723  normal 
 
 
-
 
NC_008541  Arth_0050  binding-protein-dependent transport systems inner membrane component  35.5 
 
 
305 aa  176  6e-43  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_3142  sugar ABC transporter  35.96 
 
 
275 aa  175  7e-43  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.367291  normal 
 
 
-
 
NC_011368  Rleg2_4976  binding-protein-dependent transport systems inner membrane component  36.65 
 
 
273 aa  175  8e-43  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.12262  normal 
 
 
-
 
NC_011886  Achl_2899  binding-protein-dependent transport systems inner membrane component  35.77 
 
 
316 aa  174  9.999999999999999e-43  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_010625  Bphy_6663  binding-protein-dependent transport systems inner membrane component  37.88 
 
 
270 aa  173  1.9999999999999998e-42  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0311  binding-protein-dependent transport systems inner membrane component  36.49 
 
 
292 aa  173  2.9999999999999996e-42  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.466995  n/a   
 
 
-
 
NC_009621  Smed_5860  binding-protein-dependent transport systems inner membrane component  32.92 
 
 
319 aa  173  2.9999999999999996e-42  Sinorhizobium medicae WSM419  Bacteria  normal  0.235146  normal 
 
 
-
 
NC_012791  Vapar_3350  binding-protein-dependent transport systems inner membrane component  35.61 
 
 
274 aa  173  2.9999999999999996e-42  Variovorax paradoxus S110  Bacteria  normal  0.610127  n/a   
 
 
-
 
NC_009636  Smed_0188  binding-protein-dependent transport systems inner membrane component  36.08 
 
 
277 aa  172  5.999999999999999e-42  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2438  binding-protein dependent transport system inner membrane protein  36.53 
 
 
277 aa  172  7.999999999999999e-42  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.179424  hitchhiker  0.00104394 
 
 
-
 
NC_008043  TM1040_3397  binding-protein-dependent transport systems inner membrane component  36.72 
 
 
287 aa  171  7.999999999999999e-42  Ruegeria sp. TM1040  Bacteria  normal  0.141396  normal  0.659935 
 
 
-
 
NC_012848  Rleg_4709  binding-protein-dependent transport systems inner membrane component  36.2 
 
 
278 aa  171  9e-42  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_2632  binding-protein-dependent transport systems inner membrane component  39.61 
 
 
281 aa  171  1e-41  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_4987  binding-protein-dependent transport systems inner membrane component  31.66 
 
 
319 aa  171  1e-41  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_2088  binding-protein-dependent transport systems inner membrane component  38.66 
 
 
282 aa  171  1e-41  Meiothermus ruber DSM 1279  Bacteria  hitchhiker  0.00655693  normal  0.897951 
 
 
-
 
NC_011661  Dtur_0489  binding-protein-dependent transport systems inner membrane component  35.71 
 
 
274 aa  171  2e-41  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_2039  binding-protein-dependent transport systems inner membrane component  37.6 
 
 
277 aa  171  2e-41  Pseudomonas putida W619  Bacteria  normal  0.830254  normal 
 
 
-
 
NC_008254  Meso_3773  binding-protein-dependent transport systems inner membrane component  39.71 
 
 
307 aa  170  2e-41  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_34390  putative binding-protein-dependent maltose/mannitol transport protein  37.6 
 
 
277 aa  170  2e-41  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.020452  normal  0.455482 
 
 
-
 
NC_008786  Veis_2013  binding-protein-dependent transport systems inner membrane component  37.74 
 
 
285 aa  171  2e-41  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.81  normal  0.395958 
 
 
-
 
NC_004578  PSPTO_2705  mannitol ABC transporter, permease protein  35.79 
 
 
277 aa  169  3e-41  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  decreased coverage  0.00559467  n/a   
 
 
-
 
NC_010676  Bphyt_5636  binding-protein-dependent transport systems inner membrane component  34.1 
 
 
317 aa  170  3e-41  Burkholderia phytofirmans PsJN  Bacteria  normal  0.330167  normal 
 
 
-
 
NC_007802  Jann_4088  binding-protein-dependent transport systems inner membrane component  35.48 
 
 
275 aa  169  6e-41  Jannaschia sp. CCS1  Bacteria  normal  normal  0.350213 
 
 
-
 
NC_009656  PSPA7_2923  putative binding-protein-dependent maltose/mannitol transport protein  37.6 
 
 
277 aa  168  8e-41  Pseudomonas aeruginosa PA7  Bacteria  normal  0.123543  n/a   
 
 
-
 
NC_011981  Avi_7358  ABC transporter membrane spanning protein  36.1 
 
 
306 aa  167  1e-40  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0237  sugar ABC transporter, permease protein  36.29 
 
 
291 aa  167  2e-40  Brucella suis 1330  Bacteria  normal  0.963709  n/a   
 
 
-
 
NC_012853  Rleg_5696  binding-protein-dependent transport systems inner membrane component  36.43 
 
 
283 aa  167  2e-40  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.697019  normal  0.0828938 
 
 
-
 
NC_013526  Tter_2701  binding-protein-dependent transport systems inner membrane component  36.12 
 
 
275 aa  167  2e-40  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.0563997  n/a   
 
 
-
 
NC_010627  Bphy_7449  binding-protein-dependent transport systems inner membrane component  37.45 
 
 
286 aa  167  2e-40  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009505  BOV_0230  sugar ABC transporter, permease protein  36.29 
 
 
291 aa  167  2e-40  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_008243  Meso_4515  binding-protein-dependent transport systems inner membrane component  36.23 
 
 
275 aa  166  5e-40  Chelativorans sp. BNC1  Bacteria  normal  0.275064  n/a   
 
 
-
 
NC_009485  BBta_1754  putative ABC transporter (permease protein)  37.1 
 
 
274 aa  166  5e-40  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.300196  normal  0.512561 
 
 
-
 
NC_006349  BMAA1075  putative sugar ABC transporter, permease protein  37.88 
 
 
270 aa  165  5.9999999999999996e-40  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A1234  putative sugar ABC transporter, permease protein  37.88 
 
 
270 aa  165  5.9999999999999996e-40  Burkholderia mallei NCTC 10247  Bacteria  normal  0.139462  n/a   
 
 
-
 
NC_008784  BMASAVP1_0067  putative sugar ABC transporter, permease protein  37.88 
 
 
270 aa  165  5.9999999999999996e-40  Burkholderia mallei SAVP1  Bacteria  normal  0.864372  n/a   
 
 
-
 
NC_008835  BMA10229_0352  putative sugar ABC transporter, permease protein  37.88 
 
 
270 aa  165  5.9999999999999996e-40  Burkholderia mallei NCTC 10229  Bacteria  normal  0.5283  n/a   
 
 
-
 
NC_010320  Teth514_0395  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
277 aa  165  8e-40  Thermoanaerobacter sp. X514  Bacteria  normal  0.230637  n/a   
 
 
-
 
NC_007948  Bpro_0701  binding-protein-dependent transport systems inner membrane component  35.66 
 
 
315 aa  164  1.0000000000000001e-39  Polaromonas sp. JS666  Bacteria  normal  0.338666  normal 
 
 
-
 
NC_009439  Pmen_4470  binding-protein-dependent transport systems inner membrane component  36.4 
 
 
277 aa  164  1.0000000000000001e-39  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_0809  binding-protein-dependent transport systems inner membrane component  39.11 
 
 
281 aa  164  2.0000000000000002e-39  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II1177  ABC transporter permease  37.59 
 
 
274 aa  164  2.0000000000000002e-39  Burkholderia thailandensis E264  Bacteria  decreased coverage  0.00800184  n/a   
 
 
-
 
NC_013093  Amir_0401  binding-protein-dependent transport systems inner membrane component  39.34 
 
 
273 aa  164  2.0000000000000002e-39  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_4440  binding-protein-dependent transport systems inner membrane component  35.25 
 
 
277 aa  164  2.0000000000000002e-39  Paracoccus denitrificans PD1222  Bacteria  normal  0.062682  normal 
 
 
-
 
NC_012850  Rleg_2428  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
317 aa  163  3e-39  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.443713  normal  0.627473 
 
 
-
 
NC_011004  Rpal_4891  binding-protein-dependent transport systems inner membrane component  33.73 
 
 
268 aa  163  3e-39  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3685  binding-protein-dependent transport systems inner membrane component  37.93 
 
 
299 aa  163  3e-39  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_0802  binding-protein-dependent transport systems inner membrane component  36.4 
 
 
269 aa  163  3e-39  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.489917  normal 
 
 
-
 
NC_009921  Franean1_4615  binding-protein-dependent transport systems inner membrane component  40.23 
 
 
295 aa  163  4.0000000000000004e-39  Frankia sp. EAN1pec  Bacteria  normal  0.60944  normal 
 
 
-
 
NC_009620  Smed_4977  binding-protein-dependent transport systems inner membrane component  34.03 
 
 
288 aa  162  4.0000000000000004e-39  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0547171 
 
 
-
 
NC_009718  Fnod_0448  binding-protein-dependent transport systems inner membrane component  38.82 
 
 
281 aa  162  5.0000000000000005e-39  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_19780  binding-protein-dependent transport systems inner membrane component  35.57 
 
 
253 aa  162  5.0000000000000005e-39  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008010  Dgeo_2868  binding-protein-dependent transport systems inner membrane component  38.76 
 
 
284 aa  162  5.0000000000000005e-39  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_0887  sugar ABC transporter, permease protein  37.05 
 
 
280 aa  162  6e-39  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.453961  n/a   
 
 
-
 
NC_007005  Psyr_0760  binding-protein dependent transport system inner membrane protein  36.23 
 
 
280 aa  162  6e-39  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0312496  normal  0.789995 
 
 
-
 
NC_007925  RPC_1365  binding-protein-dependent transport systems inner membrane component  33.47 
 
 
275 aa  162  6e-39  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.374311  normal 
 
 
-
 
NC_009484  Acry_1656  binding-protein-dependent transport systems inner membrane component  39.04 
 
 
273 aa  162  6e-39  Acidiphilium cryptum JF-5  Bacteria  normal  0.468113  n/a   
 
 
-
 
NC_007958  RPD_4065  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
268 aa  162  7e-39  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.641778 
 
 
-
 
NC_007778  RPB_4213  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
268 aa  162  8.000000000000001e-39  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.586864 
 
 
-
 
NC_011899  Hore_19870  binding-protein-dependent transport systems inner membrane component  36.01 
 
 
285 aa  162  8.000000000000001e-39  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011366  Rleg2_5746  binding-protein-dependent transport systems inner membrane component  35.85 
 
 
278 aa  162  8.000000000000001e-39  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.405999 
 
 
-
 
NC_008061  Bcen_5062  binding-protein-dependent transport systems inner membrane component  36.3 
 
 
273 aa  161  1e-38  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.835113  n/a   
 
 
-
 
NC_010511  M446_1971  binding-protein-dependent transport systems inner membrane component  33.73 
 
 
265 aa  161  1e-38  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2225  putative sugar ABC transport system, permease component  32.54 
 
 
268 aa  161  1e-38  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.279383  normal  0.0771654 
 
 
-
 
NC_008543  Bcen2424_5798  binding-protein-dependent transport systems inner membrane component  36.3 
 
 
273 aa  161  1e-38  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0787233  normal 
 
 
-
 
NC_010515  Bcenmc03_4381  binding-protein-dependent transport systems inner membrane component  36.3 
 
 
277 aa  161  1e-38  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_7051  binding-protein-dependent transport systems inner membrane component  35.66 
 
 
279 aa  160  2e-38  Frankia sp. EAN1pec  Bacteria  normal  0.305839  normal 
 
 
-
 
NC_007492  Pfl01_2638  binding-protein dependent transport system inner membrane protein  36.18 
 
 
276 aa  160  2e-38  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.269935  normal 
 
 
-
 
NC_012560  Avin_27380  mannitol ABC transporter permease protein  33.95 
 
 
277 aa  160  2e-38  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009429  Rsph17025_3582  hypothetical protein  33.46 
 
 
278 aa  160  3e-38  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.928396  normal  0.804079 
 
 
-
 
NC_013525  Tter_0399  binding-protein-dependent transport systems inner membrane component  33.95 
 
 
286 aa  160  3e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013440  Hoch_4323  binding-protein-dependent transport systems inner membrane component  36.25 
 
 
277 aa  160  3e-38  Haliangium ochraceum DSM 14365  Bacteria  normal  0.296556  normal 
 
 
-
 
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