17 homologs were found in PanDaTox collection
for query gene Pcar_1825 on replicon NC_007498
Organism: Pelobacter carbinolicus DSM 2380



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007498  Pcar_1825  positive regulator of sigma E activity  100 
 
 
156 aa  311  1.9999999999999998e-84  Pelobacter carbinolicus DSM 2380  Bacteria  decreased coverage  0.00000000801133  n/a   
 
 
-
 
NC_009943  Dole_2512  positive regulator of sigma E, RseC/MucC  26.8 
 
 
152 aa  64.3  0.0000000006  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_1269  positive regulator of sigma E, RseC/MucC  29.45 
 
 
151 aa  62  0.000000003  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_1301  positive regulator of sigma E, RseC/MucC  29.71 
 
 
136 aa  61.2  0.000000005  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_1772  positive regulator of sigma(E), RseC/MucC  41.57 
 
 
159 aa  59.7  0.00000002  Magnetococcus sp. MC-1  Bacteria  unclonable  0.0000000000338989  hitchhiker  0.000593819 
 
 
-
 
NC_011899  Hore_13330  positive regulator of sigma E, RseC/MucC  25 
 
 
143 aa  46.2  0.0001  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00188105  n/a   
 
 
-
 
NC_010320  Teth514_2252  positive regulator of sigma E, RseC/MucC  33.33 
 
 
146 aa  45.4  0.0003  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.0077769  n/a   
 
 
-
 
NC_008340  Mlg_1342  positive regulator of sigma E, RseC/MucC  33.11 
 
 
147 aa  44.7  0.0005  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0666262  normal  0.770202 
 
 
-
 
NC_009654  Mmwyl1_1101  positive regulator of sigma E, RseC/MucC  26.85 
 
 
155 aa  44.3  0.0006  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.138854 
 
 
-
 
NC_008740  Maqu_2260  positive regulator of sigma E, RseC/MucC  29.94 
 
 
149 aa  44.3  0.0007  Marinobacter aquaeolei VT8  Bacteria  normal  0.32117  n/a   
 
 
-
 
NC_013223  Dret_0535  positive regulator of sigma E, RseC/MucC  29.57 
 
 
125 aa  43.5  0.001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_1201  SoxR reducing system protein RseC  28.1 
 
 
150 aa  42  0.003  Pectobacterium wasabiae WPP163  Bacteria  hitchhiker  0.0000162902  n/a   
 
 
-
 
NC_011138  MADE_03001  sigma-E factor regulatory protein RseC  32.26 
 
 
148 aa  41.6  0.005  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0118803  n/a   
 
 
-
 
NC_002977  MCA1468  sigma factor regulator MucC  29.29 
 
 
146 aa  41.6  0.005  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2769  positive regulator of sigma(E), RseC/MucC  25.37 
 
 
177 aa  40.8  0.006  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00000517336  n/a   
 
 
-
 
NC_008228  Patl_3152  positive regulator of sigma E, RseC/MucC  27.95 
 
 
167 aa  40.8  0.007  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000000405546  n/a   
 
 
-
 
NC_007298  Daro_2023  positive regulator of sigma(E), RseC/MucC  38.54 
 
 
147 aa  40.8  0.007  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.00574884  normal 
 
 
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