17 homologs were found in PanDaTox collection
for query gene Pars_1936 on replicon NC_009376
Organism: Pyrobaculum arsenaticum DSM 13514



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009376  Pars_1936  exosome complex RNA-binding protein Rrp4  100 
 
 		 232 aa  462  1e-129  Pyrobaculum arsenaticum DSM 13514  Archaea  normal  1  normal  1 
 
 
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NC_008701  Pisl_0837  exosome complex RNA-binding protein Rrp4  85.22 
 
 		 231 aa  410  1e-114  Pyrobaculum islandicum DSM 4184  Archaea  normal  0.628304  normal  0.123763 
 
 
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NC_009073  Pcal_0934  exosome complex RNA-binding protein Rrp4  82.33 
 
 		 235 aa  404  1.0000000000000001e-112  Pyrobaculum calidifontis JCM 11548  Archaea  n/a    normal  1 
 
 
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NC_010525  Tneu_1382  exosome complex RNA-binding protein Rrp4  85.34 
 
 		 238 aa  394  1e-109  Thermoproteus neutrophilus V24Sta  Archaea  normal  1  normal  1 
 
 
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NC_009954  Cmaq_0366  exosome complex RNA-binding protein Rrp4  44.92 
 
 		 240 aa  229  3e-59  Caldivirga maquilingensis IC-167  Archaea  normal  1  normal  1 
 
 
-
 
CP001800  Ssol_1793  K-like, type 1, subgroup  40.27 
 
 		 247 aa  166  4e-40  Sulfolobus solfataricus 98/2  Archaea  normal  0.35215  n/a   
 
 
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NC_008698  Tpen_0582  exosome complex RNA-binding protein Rrp4  41.3 
 
 		 237 aa  163  2.0000000000000002e-39  Thermofilum pendens Hrk 5  Archaea  normal  1  n/a   
 
 
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NC_009440  Msed_0076  exosome complex RNA-binding protein Rrp4  40.09 
 
 		 247 aa  160  1e-38  Metallosphaera sedula DSM 5348  Archaea  normal  0.141072  hitchhiker  0.00451109 
 
 
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NC_013926  Aboo_0183  K-like, type 1, subgroup  39.46 
 
 		 230 aa  146  2.0000000000000003e-34  Aciduliprofundum boonei T469  Archaea  decreased coverage  0.00000922938  n/a   
 
 
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NC_008553  Mthe_1363  exosome complex RNA-binding protein Rrp4  36.44 
 
 		 221 aa  146  3e-34  Methanosaeta thermophila PT  Archaea  normal  0.438885  n/a   
 
 
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NC_007355  Mbar_A2505  exosome complex RNA-binding protein Rrp4  40.17 
 
 		 260 aa  144  1e-33  Methanosarcina barkeri str. Fusaro  Archaea  hitchhiker  0.00658393  normal  0.379662 
 
 
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NC_010085  Nmar_0431  exosome complex RNA-binding protein Rrp4  32.59 
 
 		 226 aa  139  4.999999999999999e-32  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal  0.0115724 
 
 
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NC_007955  Mbur_0198  exosome complex RNA-binding protein Rrp4  36.74 
 
 		 263 aa  130  2.0000000000000002e-29  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000000947081  n/a   
 
 
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NC_006670  CNA00790  exosome complex exonuclease rrp4, putative  25.77 
 
 		 331 aa  71.2  0.00000000001  Cryptococcus neoformans var. neoformans JEC21  Eukaryota  normal  0.937014  n/a   
 
 
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NC_009044  PICST_31470  predicted protein  26.7 
 
 		 347 aa  56.6  0.0000003  Scheffersomyces stipitis CBS 6054  Eukaryota  normal  1  normal  1 
 
 
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BN001306  ANIA_10406  exosome complex exonuclease Rrp4, putative (AFU_orthologue; AFUA_3G05860)  26.67 
 
 		 390 aa  55.1  0.000001  Aspergillus nidulans FGSC A4  Eukaryota  normal  0.674842  normal  0.0792702 
 
 
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NC_009068  PICST_34164  Exosome complex exonuclease RRP40 (Ribosomal RNA processing protein 40)  25.49 
 
 		 260 aa  50.8  0.00002  Scheffersomyces stipitis CBS 6054  Eukaryota  normal  1  normal  0.442314 
 
 
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