10 homologs were found in PanDaTox collection
for query gene PSPTO_B0060 on replicon NC_004632
Organism: Pseudomonas syringae pv. tomato str. DC3000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004632  PSPTO_B0060  traN protein  100 
 
 
352 aa  699    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_004633  PSPTOA0052  traN protein  100 
 
 
352 aa  699    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011081  SeHA_A0095  TraN  47.94 
 
 
327 aa  273  3e-72  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.174781  normal 
 
 
-
 
NC_009727  CBUD_0370  IcmK  32.89 
 
 
351 aa  121  1.9999999999999998e-26  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1812  IcmK protein  32.89 
 
 
345 aa  121  1.9999999999999998e-26  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_006369  lpl0492  hypothetical protein  28.65 
 
 
360 aa  117  3.9999999999999997e-25  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_006368  lpp0516  hypothetical protein  30 
 
 
360 aa  116  5e-25  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_009705  YpsIP31758_B0115  putative type IV secretion system protein IcmK/DotH  28.08 
 
 
361 aa  89.4  8e-17  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010580  Bind_3863  DotH  27.7 
 
 
320 aa  82.8  0.000000000000009  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.526582 
 
 
-
 
NC_008738  Maqu_4192  hypothetical protein  28.83 
 
 
331 aa  59.3  0.00000009  Marinobacter aquaeolei VT8  Bacteria  n/a    n/a   
 
 
-
 
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