8 homologs were found in PanDaTox collection
for query gene PSPTO_4038 on replicon NC_004578
Organism: Pseudomonas syringae pv. tomato str. DC3000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004578  PSPTO_2092  tail fiber domain protein  100 
 
 
475 aa  950    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.147761  n/a   
 
 
-
 
NC_004578  PSPTO_4038  tail fiber domain protein  100 
 
 
475 aa  950    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.134914  n/a   
 
 
-
 
NC_004578  PSPTO_3936  tail fiber domain protein  61.86 
 
 
332 aa  241  2e-62  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2770  tail fiber domain-containing protein  61.36 
 
 
367 aa  186  7e-46  Pseudomonas syringae pv. syringae B728a  Bacteria  decreased coverage  0.00369502  normal  0.0266249 
 
 
-
 
NC_009656  PSPA7_0787  tail fiber protein  48.92 
 
 
349 aa  120  6e-26  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_08310  hypothetical protein  42.35 
 
 
350 aa  113  8.000000000000001e-24  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.000000000314349  hitchhiker  0.0000557295 
 
 
-
 
NC_009832  Spro_0865  tail fiber repeat 2-containing protein  34.58 
 
 
554 aa  53.9  0.000006  Serratia proteamaculans 568  Bacteria  normal  normal  0.0127303 
 
 
-
 
NC_010623  Bphy_3403  triple helix repeat-containing collagen  25.77 
 
 
582 aa  45.8  0.001  Burkholderia phymatum STM815  Bacteria  normal  hitchhiker  0.0000154784 
 
 
-
 
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