70 homologs were found in PanDaTox collection
for query gene PSPTO_3541 on replicon NC_004578
Organism: Pseudomonas syringae pv. tomato str. DC3000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004578  PSPTO_3541  C4-dicarboxylate transporter/malic acid transport protein  100 
 
 
386 aa  756    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.123279  n/a   
 
 
-
 
NC_007005  Psyr_3313  C4-dicarboxylate transporter/malic acid transport protein  86.79 
 
 
386 aa  610  1e-173  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.43165 
 
 
-
 
NC_004578  PSPTO_4613  C4-dicarboxylate transporter/malic acid transport protein  74.29 
 
 
389 aa  559  1e-158  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.522364  n/a   
 
 
-
 
NC_007005  Psyr_1479  C4-dicarboxylate transporter/malic acid transport protein  74.03 
 
 
389 aa  556  1e-157  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.805909  normal 
 
 
-
 
NC_007492  Pfl01_1664  C4-dicarboxylate transporter/malic acid transport protein  71 
 
 
383 aa  493  9.999999999999999e-139  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.537362  normal  0.0255572 
 
 
-
 
NC_010581  Bind_2472  C4-dicarboxylate transporter/malic acid transport protein  58.2 
 
 
419 aa  405  1.0000000000000001e-112  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_3232  C4-dicarboxylate transporter/malic acid transport protein  57.53 
 
 
382 aa  352  5.9999999999999994e-96  Methylocella silvestris BL2  Bacteria  n/a    hitchhiker  0.00415956 
 
 
-
 
NC_009484  Acry_2615  C4-dicarboxylate transporter/malic acid transport protein  57.75 
 
 
429 aa  340  2e-92  Acidiphilium cryptum JF-5  Bacteria  normal  0.298091  n/a   
 
 
-
 
NC_011206  Lferr_0042  C4-dicarboxylate transporter/malic acid transport protein  47.11 
 
 
402 aa  327  3e-88  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.120445  normal 
 
 
-
 
NC_011761  AFE_0041  C4-dicarboxylate transporter/malic acid transport protein  47.11 
 
 
385 aa  327  3e-88  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.299856  n/a   
 
 
-
 
NC_009439  Pmen_0457  C4-dicarboxylate transporter/malic acid transport protein  51.64 
 
 
384 aa  323  3e-87  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_011126  HY04AAS1_1047  C4-dicarboxylate transporter/malic acid transport protein  43.13 
 
 
387 aa  323  3e-87  Hydrogenobaculum sp. Y04AAS1  Bacteria  decreased coverage  0.000000000418188  n/a   
 
 
-
 
NC_011761  AFE_1992  C4-dicarboxylate transporter/malic acid transport protein  46.56 
 
 
400 aa  314  1.9999999999999998e-84  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_1661  C4-dicarboxylate transporter/malic acid transport protein  46.56 
 
 
400 aa  314  1.9999999999999998e-84  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.431835 
 
 
-
 
NC_007650  BTH_II1616  C4-dicarboxylate transporter/malic acid transport protein, putative  43.01 
 
 
381 aa  285  7e-76  Burkholderia thailandensis E264  Bacteria  normal  0.195431  n/a   
 
 
-
 
NC_010552  BamMC406_4643  C4-dicarboxylate transporter/malic acid transport protein  47.65 
 
 
383 aa  276  4e-73  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008010  Dgeo_2839  C4-dicarboxylate transporter/malic acid transport protein  49.32 
 
 
378 aa  274  2.0000000000000002e-72  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
BN001306  ANIA_09133  malate permease (Eurofung)  35.45 
 
 
361 aa  210  4e-53  Aspergillus nidulans FGSC A4  Eukaryota  normal  0.0625395  normal  0.622615 
 
 
-
 
NC_008537  Arth_4391  C4-dicarboxylate transporter/malic acid transport protein  31.71 
 
 
395 aa  172  1e-41  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_5153  C4-dicarboxylate transporter/malic acid transport protein  31.34 
 
 
435 aa  171  2e-41  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_3375  C4-dicarboxylate transporter/malic acid transport protein  29.49 
 
 
353 aa  153  4e-36  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.646539  normal 
 
 
-
 
NC_006670  CNA05110  sulfite transporter, putative  30.77 
 
 
517 aa  150  3e-35  Cryptococcus neoformans var. neoformans JEC21  Eukaryota  normal  n/a   
 
 
-
 
NC_013124  Afer_0433  C4-dicarboxylate transporter/malic acid transport protein  33.81 
 
 
366 aa  149  1.0000000000000001e-34  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_4384  C4-dicarboxylate transporter/malic acid transport protein  31.61 
 
 
374 aa  146  5e-34  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_2914  C4-dicarboxylate transporter/malic acid transport protein  29.01 
 
 
369 aa  145  9e-34  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_3436  C4-dicarboxylate transporter/malic acid transport protein  29.83 
 
 
375 aa  145  1e-33  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_2282  C4-dicarboxylate transporter/malic acid transport protein  31.73 
 
 
404 aa  138  1e-31  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.522283 
 
 
-
 
NC_009901  Spea_1117  C4-dicarboxylate transporter/malic acid transport protein  28.27 
 
 
385 aa  134  3e-30  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0680  C4-dicarboxylate transporter/malic acid transport protein  29.17 
 
 
346 aa  131  2.0000000000000002e-29  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
BN001304  ANIA_11016  malic acid transport protein, putative (AFU_orthologue; AFUA_4G09410)  27.12 
 
 
388 aa  122  9.999999999999999e-27  Aspergillus nidulans FGSC A4  Eukaryota  normal  normal  0.522177 
 
 
-
 
NC_014158  Tpau_2094  C4-dicarboxylate transporter/malic acid transport protein  28.68 
 
 
395 aa  116  6.9999999999999995e-25  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.113103  n/a   
 
 
-
 
NC_013441  Gbro_4610  C4-dicarboxylate transporter/malic acid transport protein  30.25 
 
 
374 aa  115  1.0000000000000001e-24  Gordonia bronchialis DSM 43247  Bacteria  normal  0.174728  n/a   
 
 
-
 
BN001307  ANIA_01472  C4-dicarboxylate transporter/malic acid transport protein, putative (AFU_orthologue; AFUA_8G04630)  26.71 
 
 
395 aa  108  1e-22  Aspergillus nidulans FGSC A4  Eukaryota  hitchhiker  0.00510243  normal  0.213682 
 
 
-
 
NC_009043  PICST_30901  predicted protein  26.61 
 
 
433 aa  100  6e-20  Scheffersomyces stipitis CBS 6054  Eukaryota  normal  normal  0.314839 
 
 
-
 
NC_009043  PICST_30900  predicted protein  25.07 
 
 
449 aa  98.2  2e-19  Scheffersomyces stipitis CBS 6054  Eukaryota  normal  0.192917  normal  0.324549 
 
 
-
 
NC_009043  PICST_44239  predicted protein  25.15 
 
 
373 aa  98.2  2e-19  Scheffersomyces stipitis CBS 6054  Eukaryota  normal  normal  0.182141 
 
 
-
 
NC_013739  Cwoe_4856  C4-dicarboxylate transporter/malic acid transport protein  29.39 
 
 
363 aa  94  4e-18  Conexibacter woesei DSM 14684  Bacteria  normal  0.0594836  normal 
 
 
-
 
NC_013926  Aboo_0404  C4-dicarboxylate transporter/malic acid transport protein  23.1 
 
 
343 aa  92.8  1e-17  Aciduliprofundum boonei T469  Archaea  normal  n/a   
 
 
-
 
NC_013158  Huta_1807  C4-dicarboxylate transporter/malic acid transport protein  27.55 
 
 
373 aa  86.3  8e-16  Halorhabdus utahensis DSM 12940  Archaea  normal  n/a   
 
 
-
 
NC_012034  Athe_2212  C4-dicarboxylate transporter/malic acid transport protein  20.73 
 
 
347 aa  80.5  0.00000000000005  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.000186594  n/a   
 
 
-
 
NC_009043  PICST_30899  predicted protein  22.29 
 
 
438 aa  76.3  0.0000000000008  Scheffersomyces stipitis CBS 6054  Eukaryota  normal  0.341718  normal  0.766697 
 
 
-
 
NC_011830  Dhaf_0897  C4-dicarboxylate transporter/malic acid transport protein  22.57 
 
 
384 aa  73.6  0.000000000006  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0526316  n/a   
 
 
-
 
BN001304  ANIA_07797  C4-dicarboxylate transporter/malic acid transport protein, putative (AFU_orthologue; AFUA_2G17660)  24.19 
 
 
375 aa  72.4  0.00000000001  Aspergillus nidulans FGSC A4  Eukaryota  normal  normal  0.0796042 
 
 
-
 
NC_013235  Namu_4602  C4-dicarboxylate transporter/malic acid transport protein  29 
 
 
357 aa  66.6  0.0000000007  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.681396 
 
 
-
 
NC_011891  A2cp1_2173  C4-dicarboxylate transporter/malic acid transport protein  24.39 
 
 
387 aa  65.5  0.000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_1525  C4-dicarboxylate transporter/malic acid transport protein  25.07 
 
 
362 aa  62.4  0.00000001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.0288585  normal  0.364123 
 
 
-
 
NC_011761  AFE_1847  C4-dicarboxylate transporter/malic acid transport protein, putative  25.07 
 
 
362 aa  62.4  0.00000001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2079  C4-dicarboxylate transporter/malic acid transport protein  24.07 
 
 
387 aa  60.5  0.00000004  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_0133  C4-dicarboxylate transporter/malic acid transport protein  24.4 
 
 
351 aa  56.2  0.0000009  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_1428  C4-dicarboxylate transporter/malic acid transport protein  19.66 
 
 
326 aa  55.8  0.000001  Chlorobium limicola DSM 245  Bacteria  normal  0.648837  n/a   
 
 
-
 
NC_007484  Noc_0077  C4-dicarboxylate transporter/malic acid transport protein  23.28 
 
 
360 aa  56.2  0.000001  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1002  C4-dicarboxylate transporter/malic acid transport protein  19.03 
 
 
326 aa  54.7  0.000002  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B4485  C4-dicarboxylate transporter/malic acid transport protein  22.51 
 
 
331 aa  52.4  0.00001  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_1964  C4-dicarboxylate transporter/malic acid transport protein  21.07 
 
 
341 aa  52.8  0.00001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.449611  normal 
 
 
-
 
NC_007964  Nham_3443  C4-dicarboxylate transporter/malic acid transport protein  22.85 
 
 
357 aa  52.4  0.00001  Nitrobacter hamburgensis X14  Bacteria  normal  0.288016  n/a   
 
 
-
 
NC_013946  Mrub_2878  C4-dicarboxylate transporter/malic acid transport protein  28.25 
 
 
356 aa  51.6  0.00002  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_1488  C4-dicarboxylate transporter/malic acid transport protein  21.08 
 
 
326 aa  51.6  0.00002  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.138957  normal 
 
 
-
 
NC_013235  Namu_3523  C4-dicarboxylate transporter/malic acid transport protein  24.19 
 
 
366 aa  50.8  0.00004  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00371301  normal  0.143874 
 
 
-
 
NC_007484  Noc_0542  hypothetical protein  24.23 
 
 
239 aa  50.1  0.00007  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_3979  C4-dicarboxylate transporter/malic acid transport protein  23.08 
 
 
352 aa  49.3  0.0001  Nocardioides sp. JS614  Bacteria  normal  0.894801  n/a   
 
 
-
 
NC_008740  Maqu_0374  C4-dicarboxylate transporter/malic acid transport protein  21.6 
 
 
321 aa  48.9  0.0001  Marinobacter aquaeolei VT8  Bacteria  normal  0.273821  n/a   
 
 
-
 
NC_007760  Adeh_1761  C4-dicarboxylate transporter/malic acid transport protein  22.53 
 
 
387 aa  49.3  0.0001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.41649  n/a   
 
 
-
 
NC_007347  Reut_A2607  C4-dicarboxylate transporter/malic acid transport protein  20.51 
 
 
329 aa  48.5  0.0002  Ralstonia eutropha JMP134  Bacteria  normal  0.898363  n/a   
 
 
-
 
NC_011059  Paes_1250  C4-dicarboxylate transporter/malic acid transport protein  20.69 
 
 
339 aa  47.8  0.0003  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.618998 
 
 
-
 
NC_007908  Rfer_4140  C4-dicarboxylate transporter/malic acid transport protein  24.15 
 
 
374 aa  48.1  0.0003  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_0780  C4-dicarboxylate transporter/malic acid transport protein  21.08 
 
 
357 aa  47  0.0006  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.439513  normal 
 
 
-
 
NC_013172  Bfae_22500  tellurite resistance protein-like permease  24.41 
 
 
357 aa  46.6  0.0008  Brachybacterium faecium DSM 4810  Bacteria  normal  0.675884  n/a   
 
 
-
 
NC_007614  Nmul_A2613  putative C4-dicarboxylate transporter  22.31 
 
 
367 aa  43.9  0.005  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_0914  C4-dicarboxylate transporter/malic acid transport protein  23.27 
 
 
357 aa  43.1  0.007  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.120937  n/a   
 
 
-
 
NC_006682  CNM00310  conserved hypothetical protein  21.16 
 
 
382 aa  42.7  0.01  Cryptococcus neoformans var. neoformans JEC21  Eukaryota  decreased coverage  0.00875379  n/a   
 
 
-
 
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