More than 300 homologs were found in PanDaTox collection
for query gene PSPA7_1421 on replicon NC_009656
Organism: Pseudomonas aeruginosa PA7



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009656  PSPA7_1421  putative two-component response regulator  100 
 
 
213 aa  423  1e-117  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_16350  putative two-component response regulator  85.45 
 
 
213 aa  368  1e-101  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_1294  LuxR response regulator receiver  46.7 
 
 
220 aa  184  1.0000000000000001e-45  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.721447 
 
 
-
 
NC_004578  PSPTO_1484  DNA-binding response regulator, LuxR family  46.63 
 
 
208 aa  177  9e-44  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3267  transcriptional regulator RcsB  40.38 
 
 
216 aa  160  1e-38  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00059602  normal 
 
 
-
 
NC_007435  BURPS1710b_A1630  DNA-binding response regulator  39.22 
 
 
220 aa  157  1e-37  Burkholderia pseudomallei 1710b  Bacteria  normal  0.0322132  n/a   
 
 
-
 
NC_012912  Dd1591_3017  transcriptional regulator RcsB  38.97 
 
 
216 aa  157  1e-37  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1041  transcriptional regulator RcsB  38.97 
 
 
218 aa  157  1e-37  Dickeya dadantii Ech703  Bacteria  normal  0.140172  n/a   
 
 
-
 
NC_010465  YPK_2843  transcriptional regulator RcsB  41.35 
 
 
217 aa  156  2e-37  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2764  transcriptional regulator RcsB  41.35 
 
 
217 aa  156  2e-37  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.408225  n/a   
 
 
-
 
NC_007650  BTH_II0142  DNA-binding response regulator  39.71 
 
 
220 aa  156  2e-37  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A0187  LuxR response regulator receiver  39.71 
 
 
220 aa  156  2e-37  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A1307  transcriptional regulator RcsB  41.35 
 
 
217 aa  156  2e-37  Yersinia pestis Angola  Bacteria  normal  0.0162714  normal 
 
 
-
 
NC_009078  BURPS1106A_A0161  LuxR family DNA-binding response regulator  38.73 
 
 
220 aa  155  4e-37  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1107  transcriptional regulator RcsB  39.42 
 
 
216 aa  154  9e-37  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_0155  two component transcriptional regulator, LuxR family  39.53 
 
 
212 aa  154  9e-37  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
CP001637  EcDH1_1441  two component transcriptional regulator, LuxR family  39.44 
 
 
216 aa  153  2e-36  Escherichia coli DH1  Bacteria  hitchhiker  0.0000000259515  n/a   
 
 
-
 
NC_010468  EcolC_1433  transcriptional regulator RcsB  39.44 
 
 
216 aa  153  2e-36  Escherichia coli ATCC 8739  Bacteria  normal  0.0102563  hitchhiker  0.00285537 
 
 
-
 
NC_010498  EcSMS35_2366  transcriptional regulator RcsB  39.44 
 
 
216 aa  153  2e-36  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.0000282288  normal 
 
 
-
 
NC_011094  SeSA_A2496  transcriptional regulator RcsB  39.44 
 
 
216 aa  153  2e-36  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.424983  normal 
 
 
-
 
NC_011083  SeHA_C2510  transcriptional regulator RcsB  39.44 
 
 
216 aa  153  2e-36  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.731723  normal  0.0675268 
 
 
-
 
NC_011205  SeD_A2614  transcriptional regulator RcsB  39.44 
 
 
216 aa  153  2e-36  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.588596 
 
 
-
 
NC_007348  Reut_B5845  LuxR response regulator receiver  39.72 
 
 
214 aa  153  2e-36  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2517  transcriptional regulator RcsB  39.44 
 
 
216 aa  153  2e-36  Escherichia coli E24377A  Bacteria  hitchhiker  0.0000000600529  n/a   
 
 
-
 
NC_011353  ECH74115_3357  transcriptional regulator RcsB  39.44 
 
 
216 aa  153  2e-36  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.000561339  normal 
 
 
-
 
NC_011080  SNSL254_A2455  transcriptional regulator RcsB  39.44 
 
 
216 aa  153  2e-36  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.0427332  normal  0.0831575 
 
 
-
 
NC_009436  Ent638_2797  transcriptional regulator RcsB  38.97 
 
 
216 aa  153  2e-36  Enterobacter sp. 638  Bacteria  hitchhiker  0.000000283918  normal 
 
 
-
 
NC_011149  SeAg_B2406  transcriptional regulator RcsB  39.44 
 
 
216 aa  153  2e-36  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  decreased coverage  0.00000000625449  n/a   
 
 
-
 
NC_010515  Bcenmc03_4224  two component LuxR family transcriptional regulator  40.57 
 
 
231 aa  152  2.9999999999999998e-36  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.322534  normal  0.434129 
 
 
-
 
NC_009074  BURPS668_1618  DNA-binding response regulator  40 
 
 
210 aa  152  2.9999999999999998e-36  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3209  transcriptional regulator RcsB  38.94 
 
 
216 aa  152  2.9999999999999998e-36  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E0721  transcriptional regulator RcsB  39.44 
 
 
228 aa  152  4e-36  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.000245188  n/a   
 
 
-
 
NC_009800  EcHS_A2357  transcriptional regulator RcsB  39.44 
 
 
228 aa  152  4e-36  Escherichia coli HS  Bacteria  hitchhiker  0.00000000398144  n/a   
 
 
-
 
NC_006348  BMA0879  DNA-binding response regulator  39.91 
 
 
210 aa  152  5e-36  Burkholderia mallei ATCC 23344  Bacteria  normal  0.888299  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1403  DNA-binding response regulator  39.91 
 
 
210 aa  152  5e-36  Burkholderia mallei SAVP1  Bacteria  normal  0.846273  n/a   
 
 
-
 
NC_007434  BURPS1710b_1797  DNA-binding response regulator  39.91 
 
 
210 aa  152  5e-36  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_0685  capsular synthesis regulator component B  39.91 
 
 
210 aa  152  5e-36  Burkholderia mallei NCTC 10247  Bacteria  normal  0.394747  n/a   
 
 
-
 
NC_009076  BURPS1106A_1640  capsular synthesis regulator component B  39.91 
 
 
210 aa  152  5e-36  Burkholderia pseudomallei 1106a  Bacteria  normal  0.0841891  n/a   
 
 
-
 
NC_008836  BMA10229_A0473  DNA-binding response regulator  39.91 
 
 
210 aa  152  5e-36  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2674  DNA-binding response regulator  39.44 
 
 
210 aa  150  1e-35  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_4444  capsular synthesis regulator component B, putative  36.41 
 
 
212 aa  150  2e-35  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010622  Bphy_2872  two component LuxR family transcriptional regulator  40.95 
 
 
235 aa  148  7e-35  Burkholderia phymatum STM815  Bacteria  normal  0.891055  hitchhiker  0.000000000201971 
 
 
-
 
NC_011663  Sbal223_0289  two component transcriptional regulator, LuxR family  35.35 
 
 
212 aa  147  8e-35  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A0280  two component LuxR family transcriptional regulator  40.95 
 
 
229 aa  147  1.0000000000000001e-34  Burkholderia xenovorans LB400  Bacteria  normal  hitchhiker  0.00188137 
 
 
-
 
NC_010681  Bphyt_3677  two component transcriptional regulator, LuxR family  40.95 
 
 
229 aa  147  2.0000000000000003e-34  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0102182  hitchhiker  0.0000000000674126 
 
 
-
 
NC_007974  Rmet_4965  two component LuxR family transcriptional regulator  41.9 
 
 
214 aa  146  3e-34  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.122556 
 
 
-
 
NC_009075  BURPS668_A0258  LuxR response regulator receiver  39.25 
 
 
230 aa  145  5e-34  Burkholderia pseudomallei 668  Bacteria  normal  0.752946  n/a   
 
 
-
 
NC_010515  Bcenmc03_4225  two component LuxR family transcriptional regulator  38.14 
 
 
241 aa  144  7.0000000000000006e-34  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.107538  normal  0.322545 
 
 
-
 
NC_007435  BURPS1710b_A1634  DNA-binding response regulator  38.43 
 
 
230 aa  144  9e-34  Burkholderia pseudomallei 1710b  Bacteria  normal  0.723228  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0170  capsular synthesis regulator component B  38.43 
 
 
230 aa  144  9e-34  Burkholderia pseudomallei 1106a  Bacteria  normal  0.443347  n/a   
 
 
-
 
NC_007511  Bcep18194_B2880  two component LuxR family transcriptional regulator  38.21 
 
 
224 aa  144  1e-33  Burkholderia sp. 383  Bacteria  normal  0.345086  normal 
 
 
-
 
NC_010086  Bmul_5217  two component LuxR family transcriptional regulator  37.98 
 
 
224 aa  141  9e-33  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_5152  two component LuxR family transcriptional regulator  37.5 
 
 
219 aa  140  9.999999999999999e-33  Burkholderia ambifaria AMMD  Bacteria  normal  0.535465  normal 
 
 
-
 
NC_007650  BTH_II0198  DNA-binding response regulator  37.85 
 
 
230 aa  139  3.9999999999999997e-32  Burkholderia thailandensis E264  Bacteria  normal  0.292201  n/a   
 
 
-
 
NC_003295  RSc3078  response regulator transcription regulator protein  39.35 
 
 
222 aa  137  8.999999999999999e-32  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0498276  normal 
 
 
-
 
NC_010552  BamMC406_3287  two component LuxR family transcriptional regulator  37.26 
 
 
223 aa  137  8.999999999999999e-32  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.404787 
 
 
-
 
NC_008463  PA14_11120  putative response regulator  41.9 
 
 
214 aa  137  8.999999999999999e-32  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0630  two component transcriptional regulator, LuxR family  36.02 
 
 
234 aa  136  3.0000000000000003e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.210211 
 
 
-
 
NC_007951  Bxe_A4070  two component LuxR family transcriptional regulator  36.97 
 
 
229 aa  135  4e-31  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0354  two component LuxR family transcriptional regulator  37.56 
 
 
217 aa  134  9.999999999999999e-31  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A1693  LuxR response regulator receiver  37.14 
 
 
214 aa  134  9.999999999999999e-31  Ralstonia eutropha JMP134  Bacteria  normal  0.478316  n/a   
 
 
-
 
NC_012856  Rpic12D_3010  two component transcriptional regulator, LuxR family  39.45 
 
 
222 aa  132  6e-30  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_3081  two component LuxR family transcriptional regulator  36.87 
 
 
217 aa  131  6.999999999999999e-30  Delftia acidovorans SPH-1  Bacteria  normal  0.450994  normal  0.856151 
 
 
-
 
NC_003295  RSc3388  two-component response regulator transcription regulator protein  36.62 
 
 
215 aa  130  1.0000000000000001e-29  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0201761  normal 
 
 
-
 
NC_010622  Bphy_0355  two component LuxR family transcriptional regulator  35.55 
 
 
236 aa  130  1.0000000000000001e-29  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3357  two component transcriptional regulator, LuxR family  38.99 
 
 
222 aa  130  2.0000000000000002e-29  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3752  two component LuxR family transcriptional regulator  35.92 
 
 
215 aa  130  2.0000000000000002e-29  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_4641  two component LuxR family transcriptional regulator  38.79 
 
 
213 aa  130  2.0000000000000002e-29  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.169112  normal  0.068024 
 
 
-
 
NC_010515  Bcenmc03_4702  two component LuxR family transcriptional regulator  37.85 
 
 
213 aa  129  4.0000000000000003e-29  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.121015 
 
 
-
 
NC_007492  Pfl01_3041  two component LuxR family transcriptional regulator  38.21 
 
 
215 aa  128  7.000000000000001e-29  Pseudomonas fluorescens Pf0-1  Bacteria  decreased coverage  0.000032992  normal  0.146168 
 
 
-
 
NC_009656  PSPA7_1021  putative response regulator  42.79 
 
 
214 aa  127  9.000000000000001e-29  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_0629  two component transcriptional regulator, LuxR family  36.7 
 
 
230 aa  127  2.0000000000000002e-28  Burkholderia phytofirmans PsJN  Bacteria  normal  0.452847  normal  0.285643 
 
 
-
 
NC_007974  Rmet_3986  two component LuxR family transcriptional regulator  37.74 
 
 
217 aa  127  2.0000000000000002e-28  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.039666 
 
 
-
 
NC_007951  Bxe_A4071  two component LuxR family transcriptional regulator  35.75 
 
 
221 aa  124  9e-28  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_3938  two component LuxR family transcriptional regulator  36.19 
 
 
218 aa  122  4e-27  Delftia acidovorans SPH-1  Bacteria  normal  0.189042  normal  0.262256 
 
 
-
 
NC_010681  Bphyt_0631  two component transcriptional regulator, LuxR family  36.92 
 
 
214 aa  121  6e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.151672 
 
 
-
 
NC_007348  Reut_B3667  two component LuxR family transcriptional regulator  37.74 
 
 
215 aa  121  6e-27  Ralstonia eutropha JMP134  Bacteria  normal  0.849529  n/a   
 
 
-
 
NC_011071  Smal_0735  two component transcriptional regulator, LuxR family  35.94 
 
 
213 aa  120  9.999999999999999e-27  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A4069  two component LuxR family transcriptional regulator  35.05 
 
 
225 aa  119  3e-26  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009076  BURPS1106A_2078  LuxR family DNA-binding response regulator  35.68 
 
 
221 aa  119  3.9999999999999996e-26  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA1034  DNA-binding response regulator  35.68 
 
 
221 aa  119  3.9999999999999996e-26  Burkholderia mallei ATCC 23344  Bacteria  normal  0.315998  n/a   
 
 
-
 
NC_007434  BURPS1710b_2225  DNA-binding response regulator  35.68 
 
 
221 aa  119  3.9999999999999996e-26  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_4229  two component LuxR family transcriptional regulator  36.41 
 
 
215 aa  119  3.9999999999999996e-26  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00851836  normal 
 
 
-
 
NC_009074  BURPS668_2022  DNA-binding response regulator  35.68 
 
 
221 aa  119  3.9999999999999996e-26  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_4235  two component LuxR family transcriptional regulator  36.41 
 
 
215 aa  119  4.9999999999999996e-26  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_0283  two component transcriptional regulator, LuxR family  37.26 
 
 
208 aa  119  4.9999999999999996e-26  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.393471  normal  0.0532877 
 
 
-
 
NC_010682  Rpic_3595  two component transcriptional regulator, LuxR family  32.74 
 
 
215 aa  118  6e-26  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_3936  two component LuxR family transcriptional regulator  37.5 
 
 
231 aa  118  7.999999999999999e-26  Delftia acidovorans SPH-1  Bacteria  normal  0.426907  normal  0.200888 
 
 
-
 
NC_007348  Reut_B3619  LuxR response regulator receiver  35.48 
 
 
219 aa  117  9.999999999999999e-26  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_3939  two component transcriptional regulator  32.74 
 
 
300 aa  117  9.999999999999999e-26  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.555587 
 
 
-
 
NC_010622  Bphy_0356  two component LuxR family transcriptional regulator  34.58 
 
 
223 aa  116  1.9999999999999998e-25  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C1157  two component LuxR family transcriptional regulator  33.33 
 
 
215 aa  117  1.9999999999999998e-25  Burkholderia xenovorans LB400  Bacteria  normal  0.505737  normal 
 
 
-
 
NC_012856  Rpic12D_3273  two component transcriptional regulator, LuxR family  33.97 
 
 
215 aa  116  1.9999999999999998e-25  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010553  BamMC406_6665  two component LuxR family transcriptional regulator  35.29 
 
 
225 aa  115  5e-25  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0397086  normal  0.0268041 
 
 
-
 
NC_010515  Bcenmc03_4699  two component LuxR family transcriptional regulator  32.52 
 
 
246 aa  115  6.9999999999999995e-25  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.372391  hitchhiker  0.00465492 
 
 
-
 
NC_010725  Mpop_3747  two component transcriptional regulator, LuxR family  35.02 
 
 
221 aa  114  1.0000000000000001e-24  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_4692  two component LuxR family transcriptional regulator  35.51 
 
 
223 aa  113  2.0000000000000002e-24  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.00363591  hitchhiker  0.0000170982 
 
 
-
 
NC_010553  BamMC406_6659  two component LuxR family transcriptional regulator  35.79 
 
 
207 aa  111  6e-24  Burkholderia ambifaria MC40-6  Bacteria  decreased coverage  0.0000389797  hitchhiker  0.000384101 
 
 
-
 
NC_010505  Mrad2831_3042  two component LuxR family transcriptional regulator  34.1 
 
 
222 aa  110  2.0000000000000002e-23  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.280021 
 
 
-
 
NC_010623  Bphy_3459  two component LuxR family transcriptional regulator  34.56 
 
 
219 aa  108  5e-23  Burkholderia phymatum STM815  Bacteria  normal  0.141427  normal  0.865068 
 
 
-
 
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